mRNA_S-dermatodea_contig87997.16934.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig87997.16934.1
Unique NamemRNA_S-dermatodea_contig87997.16934.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig87997.16934.1 vs. uniprot
Match: A0A6H5L4Q3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Q3_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 3.350e-18
Identity = 37/43 (86.05%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:    1 EQGRVCAVKESFGFVRCMDRPGDLFFRLTEAPANVKVGDEVDF 129
            EQGRVC++KESFGFVRCMDRPGDLFF LTEAP N+ VGDEVDF
Sbjct:  159 EQGRVCSIKESFGFVRCMDRPGDLFFHLTEAPPNINVGDEVDF 201
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BLAST of mRNA_S-dermatodea_contig87997.16934.1 vs. uniprot
Match: D7FPP6_ECTSI (CSD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPP6_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 3.360e-18
Identity = 37/43 (86.05%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:    1 EQGRVCAVKESFGFVRCMDRPGDLFFRLTEAPANVKVGDEVDF 129
            EQGRVC++KESFGFVRCMDRPGDLFF LTEAP N+ VGDEVDF
Sbjct:  160 EQGRVCSIKESFGFVRCMDRPGDLFFHLTEAPPNINVGDEVDF 202
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BLAST of mRNA_S-dermatodea_contig87997.16934.1 vs. uniprot
Match: A0A5D6XH35_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XH35_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.070e-11
Identity = 30/43 (69.77%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 EQGRVCAVKESFGFVRCMDRPGDLFFRLTEAPANVKVGDEVDF 129
            EQG V A+KESFGFV CMDR GDLFF +TEAP +V++ DEV+F
Sbjct:  149 EQGVVIAIKESFGFVSCMDRDGDLFFHITEAPVDVQLHDEVEF 191
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BLAST of mRNA_S-dermatodea_contig87997.16934.1 vs. uniprot
Match: A0A7S2SQY9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQY9_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 4.450e-11
Identity = 26/43 (60.47%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:    1 EQGRVCAVKESFGFVRCMDRPGDLFFRLTEAPANVKVGDEVDF 129
            E G+V ++KE FGF+RC+ RPGDLFF ++EAP +++VGDEV+F
Sbjct:   27 ECGKVKSLKEKFGFIRCVGRPGDLFFHISEAPRDIEVGDEVEF 69
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BLAST of mRNA_S-dermatodea_contig87997.16934.1 vs. uniprot
Match: K3WP78_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WP78_GLOUD)

HSP 1 Score: 62.4 bits (150), Expect = 3.330e-10
Identity = 27/43 (62.79%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 EQGRVCAVKESFGFVRCMDRPGDLFFRLTEAPANVKVGDEVDF 129
            E+G V ++KESFGFV C+DR GDLFF +TEAP +V++ DEV+F
Sbjct:  174 EKGIVVSIKESFGFVSCVDREGDLFFHITEAPVDVQLQDEVEF 216
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BLAST of mRNA_S-dermatodea_contig87997.16934.1 vs. uniprot
Match: A0A3F2RIS8_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RIS8_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 8.500e-10
Identity = 26/43 (60.47%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 EQGRVCAVKESFGFVRCMDRPGDLFFRLTEAPANVKVGDEVDF 129
            EQG V ++K+SFGFV CM+R GDLFF ++EAP +V++ DEV+F
Sbjct:  186 EQGFVVSIKDSFGFVSCMEREGDLFFHISEAPVDVQLQDEVEF 228
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BLAST of mRNA_S-dermatodea_contig87997.16934.1 vs. uniprot
Match: A0A662X4D1_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X4D1_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 8.500e-10
Identity = 26/43 (60.47%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 EQGRVCAVKESFGFVRCMDRPGDLFFRLTEAPANVKVGDEVDF 129
            E+G V ++KE+FGFV CM+R GDLFF +TEAP +V++ DEV+F
Sbjct:  293 ERGFVVSIKENFGFVSCMEREGDLFFHITEAPVDVQLQDEVEF 335
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BLAST of mRNA_S-dermatodea_contig87997.16934.1 vs. uniprot
Match: A0A3M6V819_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V819_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.160e-9
Identity = 26/43 (60.47%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    1 EQGRVCAVKESFGFVRCMDRPGDLFFRLTEAPANVKVGDEVDF 129
            EQG V ++KE+FGFV CM+R GDLFF ++EAP  V++ DEV+F
Sbjct:  204 EQGFVVSIKENFGFVSCMERDGDLFFHISEAPVGVQLQDEVEF 246
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BLAST of mRNA_S-dermatodea_contig87997.16934.1 vs. uniprot
Match: D0NFB4_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NFB4_PHYIT)

HSP 1 Score: 60.8 bits (146), Expect = 1.160e-9
Identity = 25/43 (58.14%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 EQGRVCAVKESFGFVRCMDRPGDLFFRLTEAPANVKVGDEVDF 129
            EQG + ++KE+FGFV CM+R GDLFF ++EAP +V++ DEV+F
Sbjct:  180 EQGFIVSIKENFGFVSCMERDGDLFFHISEAPVDVQLQDEVEF 222
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BLAST of mRNA_S-dermatodea_contig87997.16934.1 vs. uniprot
Match: W2QJD1_PHYPN (Uncharacterized protein n=12 Tax=Phytophthora TaxID=4783 RepID=W2QJD1_PHYPN)

HSP 1 Score: 60.8 bits (146), Expect = 1.160e-9
Identity = 25/43 (58.14%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 EQGRVCAVKESFGFVRCMDRPGDLFFRLTEAPANVKVGDEVDF 129
            EQG + ++KE+FGFV CM+R GDLFF ++EAP +V++ DEV+F
Sbjct:  169 EQGFIVSIKENFGFVSCMERDGDLFFHISEAPVDVQLQDEVEF 211
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig87997.16934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4Q3_9PHAE3.350e-1886.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPP6_ECTSI3.360e-1886.05CSD domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A5D6XH35_9STRA1.070e-1169.77Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
A0A7S2SQY9_9STRA4.450e-1160.47Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
K3WP78_GLOUD3.330e-1062.79Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A3F2RIS8_9STRA8.500e-1060.47Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
A0A662X4D1_9STRA8.500e-1060.47Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A3M6V819_9STRA1.160e-960.47Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
D0NFB4_PHYIT1.160e-958.14Uncharacterized protein n=2 Tax=Phytophthora infes... [more]
W2QJD1_PHYPN1.160e-958.14Uncharacterized protein n=12 Tax=Phytophthora TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig87997contigS-dermatodea_contig87997:412..540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.5
Seed ortholog evalue6.6e-15
Seed eggNOG ortholog2880.D7FPP6
Preferred nameCSDE1
KEGG koko:K19721
KEGG Pathwayko04974,map04974
GOsGO:0000003,GO:0000956,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003730,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005829,GO:0005886,GO:0006139,GO:0006401,GO:0006402,GO:0006417,GO:0006725,GO:0006807,GO:0007275,GO:0007548,GO:0007549,GO:0008150,GO:0008152,GO:0008406,GO:0008584,GO:0009047,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0012505,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0017148,GO:0019222,GO:0019439,GO:0022414,GO:0022607,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032991,GO:0034248,GO:0034249,GO:0034622,GO:0034641,GO:0034655,GO:0040029,GO:0042714,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0045137,GO:0046483,GO:0046546,GO:0046661,GO:0046700,GO:0048513,GO:0048519,GO:0048523,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0061458,GO:0065003,GO:0065007,GO:0070937,GO:0070966,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:2000112,GO:2000113
EggNOG free text desc.nuclear-transcribed mRNA catabolic process, no-go decay
EggNOG OGs28K4H@1,2QSJ1@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size129
Cds size129
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925367.2085629-CDS-S-dermatodea_contig87997:411..5401622925367.2085629-CDS-S-dermatodea_contig87997:411..540Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig87997 412..540 +
1694079885.3091512-CDS-S-dermatodea_contig87997:411..5401694079885.3091512-CDS-S-dermatodea_contig87997:411..540Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig87997 412..540 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig87997.16934.1prot_S-dermatodea_contig87997.16934.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig87997 412..540 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig87997.16934.1

>prot_S-dermatodea_contig87997.16934.1 ID=prot_S-dermatodea_contig87997.16934.1|Name=mRNA_S-dermatodea_contig87997.16934.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=43bp
EQGRVCAVKESFGFVRCMDRPGDLFFRLTEAPANVKVGDEVDF
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mRNA from alignment at S-dermatodea_contig87997:412..540+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig87997.16934.1 ID=mRNA_S-dermatodea_contig87997.16934.1|Name=mRNA_S-dermatodea_contig87997.16934.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=129bp|location=Sequence derived from alignment at S-dermatodea_contig87997:412..540+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGCAGGGGCGCGTTTGTGCTGTGAAAGAGTCTTTCGGTTTCGTCCGATG
CATGGACAGACCGGGAGACCTGTTCTTCCGCCTGACCGAGGCCCCAGCTA
ACGTTAAGGTCGGCGACGAGGTTGACTTC
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Coding sequence (CDS) from alignment at S-dermatodea_contig87997:412..540+

>mRNA_S-dermatodea_contig87997.16934.1 ID=mRNA_S-dermatodea_contig87997.16934.1|Name=mRNA_S-dermatodea_contig87997.16934.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=258bp|location=Sequence derived from alignment at S-dermatodea_contig87997:412..540+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGCAGGGGCGCGTTTGTGCTGTGAAAGAGTCTTTCGGTTTCGTCCGATG
CATGGACAGACCGGGAGACCTGTTCTTCCGCCTGACCGAGGCCCCAGCTA
ACGTTAAGGTCGGCGACGAGGTTGACTTCGAGCAGGGGCGCGTTTGTGCT
GTGAAAGAGTCTTTCGGTTTCGTCCGATGCATGGACAGACCGGGAGACCT
GTTCTTCCGCCTGACCGAGGCCCCAGCTAACGTTAAGGTCGGCGACGAGG
TTGACTTC
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