mRNA_S-dermatodea_contig8799.16933.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8799.16933.1
Unique NamemRNA_S-dermatodea_contig8799.16933.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8799.16933.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8799contigS-dermatodea_contig8799:6379..7372 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size297
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925367.1584291-CDS-S-dermatodea_contig8799:6378..65181622925367.1584291-CDS-S-dermatodea_contig8799:6378..6518Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8799 6379..6518 +
1694079885.285658-CDS-S-dermatodea_contig8799:6378..65181694079885.285658-CDS-S-dermatodea_contig8799:6378..6518Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8799 6379..6518 +
1622925367.170168-CDS-S-dermatodea_contig8799:7215..73721622925367.170168-CDS-S-dermatodea_contig8799:7215..7372Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8799 7216..7372 +
1694079885.2946794-CDS-S-dermatodea_contig8799:7215..73721694079885.2946794-CDS-S-dermatodea_contig8799:7215..7372Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8799 7216..7372 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8799.16933.1prot_S-dermatodea_contig8799.16933.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8799 6379..7372 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8799.16933.1

>prot_S-dermatodea_contig8799.16933.1 ID=prot_S-dermatodea_contig8799.16933.1|Name=mRNA_S-dermatodea_contig8799.16933.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=99bp
PRCLLQPTSRAAAMGLTCSKSAFDDTADTIRVDSEPEESCGTPRTERSSE
DIFEADDELAATAVRDQGVVVLVRIRPKSSAEHAGAQRSDFLRVQSPTQ
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mRNA from alignment at S-dermatodea_contig8799:6379..7372+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8799.16933.1 ID=mRNA_S-dermatodea_contig8799.16933.1|Name=mRNA_S-dermatodea_contig8799.16933.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=994bp|location=Sequence derived from alignment at S-dermatodea_contig8799:6379..7372+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCGCGCTGCTTGCTCCAACCCACATCGCGCGCGGCAGCCATGGGTCTGAC
CTGCTCAAAGAGCGCTTTCGACGACACGGCAGACACCATCCGAGTCGACA
GCGAACCAGAGGAGAGCTGCGGCACACCTCGGACCGAACGGTATGTATTA
GACGCCAGCACCAGCACCAGCACCAGACAGTTTCTCGAGCACCCAGAAGG
AACTTATATACGACAATTAATTTGAATTTGCGGCATGGTTTTCGAGCGGC
GTGCGCCGCAGCTTCCAGCAGCAGCAGCGGCAGCAGTTGTAGTTCGCCGA
CAAACCATGGAACGTTCGCTCTCGCTTGGTCGCTCAGCCTCCTGTAGATA
CTGCTATAGCTCTTGCCGGGCAGAGACCGGAGAGGTTCGGGCGCCGTATC
TTACAGCAAAGACAGCATCGCGGACCACTGGTGTACGAGTGCTCCGCTTG
TTTGTGTTGGAATGGAATTGAAAAAAAACCGATCGCATGCCAATGATAAT
ATACTCCGAGTATACTGTATATTGTGCGGTACGTATCATACGCACGACCC
AATAAAAGTCCAAACTGCCGTTGTTGCTATTATATTATACTGCAATTGCT
GCACATCATGTGATAACTGAAACTTTTCAAAGGCGGGGGACGCAGCTGAC
ACATGGTATTCTCATAGATAGCTCTAGCCAATCGACAAGGACGAGAGTTA
CGGCTGTGTGTGCTGCTATGATATACATAAACTCTGTGAGTTGTCGCATT
TTAGGACACGAACGGAATGCGACGCCCTCGCCCCTTCCTCGAGTGCTACT
ATCATATTCACTTGCGGTTGTTGTTGTTGTATGTCAGGAGCAGCGAAGAC
ATTTTTGAGGCGGATGATGAGCTTGCTGCGACAGCTGTGCGCGACCAAGG
CGTCGTCGTTCTCGTCAGAATTCGACCCAAGTCCAGCGCGGAGCACGCGG
GGGCGCAGCGCTCTGATTTCCTTCGAGTGCAGAGTCCGACACAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8799:6379..7372+

>mRNA_S-dermatodea_contig8799.16933.1 ID=mRNA_S-dermatodea_contig8799.16933.1|Name=mRNA_S-dermatodea_contig8799.16933.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at S-dermatodea_contig8799:6379..7372+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCGCGCTGCTTGCTCCAACCCACATCGCGCGCGGCAGCCATGGGTCTGAC
CTGCTCAAAGAGCGCTTTCGACGACACGGCAGACACCATCCGAGTCGACA
GCGAACCAGAGGAGAGCTGCGGCACACCTCGGACCGAACGCCGCGCTGCT
TGCTCCAACCCACATCGCGCGCGGCAGCCATGGGTCTGACCTGCTCAAAG
AGCGCTTTCGACGACACGGCAGACACCATCCGAGTCGACAGCGAACCAGA
GGAGAGCTGCGGCACACCTCGGACCGAACGGAGCAGCGAAGACATTTTTG
AGGCGGATGATGAGCTTGCTGCGACAGCTGTGCGCGACCAAGGCGTCGTC
GTTCTCGTCAGAATTCGACCCAAGTCCAGCGCGGAGCACGCGGGGGCGCA
GCGCTCTGATTTCCTTCGAGTGCAGAGTCCGACACAGGAGCAGCGAAGAC
ATTTTTGAGGCGGATGATGAGCTTGCTGCGACAGCTGTGCGCGACCAAGG
CGTCGTCGTTCTCGTCAGAATTCGACCCAAGTCCAGCGCGGAGCACGCGG
GGGCGCAGCGCTCTGATTTCCTTCGAGTGCAGAGTCCGACACAG
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