mRNA_S-dermatodea_contig8798.16932.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8798.16932.1
Unique NamemRNA_S-dermatodea_contig8798.16932.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig8798.16932.1 vs. uniprot
Match: D7G5U6_ECTSI (FGGY_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5U6_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 2.710e-42
Identity = 78/104 (75.00%), Postives = 87/104 (83.65%), Query Frame = 1
Query:   25 RSSRMFRM----SKDGPRGDAAEEPLWLGLDLSTQSLTGAVLRGEGVGGSFNEPVVLESINFERDLPVEQRYGSKNGMTVTGSQVTSPVAMWLHALEALLQRLK 324
            R+SR+F      SKDG   +   EPLWLGLDLSTQSLT AVLRG+GVGG+FNEP++LESIN+E+DLPVEQRYGSKNGM V   QVTSPVAMWLHALEALLQRLK
Sbjct:   30 RASRVFMFPTMASKDGQEQEEQGEPLWLGLDLSTQSLTAAVLRGDGVGGTFNEPILLESINYEKDLPVEQRYGSKNGMKVVDEQVTSPVAMWLHALEALLQRLK 133          
BLAST of mRNA_S-dermatodea_contig8798.16932.1 vs. uniprot
Match: A0A4S4LY18_9AGAM (FGGY_N domain-containing protein (Fragment) n=1 Tax=Bondarzewia mesenterica TaxID=1095465 RepID=A0A4S4LY18_9AGAM)

HSP 1 Score: 65.1 bits (157), Expect = 4.740e-10
Identity = 42/84 (50.00%), Postives = 54/84 (64.29%), Query Frame = 1
Query:   85 PLWLGLDLSTQSLTGAVLRGEGVGGSFNEPVVLE-SINFERDLPVEQRYGSKNGMTVTG---SQVTSPVAMWLHALEALLQRLK 324
            PL+LGLDLSTQ L   V+  + V       VV E ++NF+RDLP    YG+ NG  + G    +VTSPVAMWL AL+ L+QR+K
Sbjct:    8 PLFLGLDLSTQKLKAIVISEDSV-------VVHEIAVNFQRDLP---HYGTTNG-AIKGPDEGEVTSPVAMWLEALDLLMQRMK 80          
BLAST of mRNA_S-dermatodea_contig8798.16932.1 vs. uniprot
Match: UPI0004416F3B (actin-like ATPase domain-containing protein n=1 Tax=Punctularia strigosozonata (strain HHB-11173) TaxID=741275 RepID=UPI0004416F3B)

HSP 1 Score: 64.7 bits (156), Expect = 6.890e-10
Identity = 40/86 (46.51%), Postives = 53/86 (61.63%), Query Frame = 1
Query:   73 AAEEPLWLGLDLSTQSLTGAVLRGEGVGGSFNEPVVLES-INFERDLPVEQRYGSKNG-MTVTGSQVTSPVAMWLHALEALLQRLK 324
            A  +PL+LGLDLSTQ L G ++  +         VV ES +NF+RDLP    Y + NG +   G QVTSPV MWL A++ L+ R+K
Sbjct:    3 AIHDPLFLGLDLSTQGLKGVLINEDSA-------VVHESAVNFDRDLP---SYRTTNGAIRGPGGQVTSPVKMWLEAMDLLMHRMK 78          
BLAST of mRNA_S-dermatodea_contig8798.16932.1 vs. uniprot
Match: W4K068_HETIT (Xylulose kinase n=1 Tax=Heterobasidion irregulare (strain TC 32-1) TaxID=747525 RepID=W4K068_HETIT)

HSP 1 Score: 63.9 bits (154), Expect = 1.280e-9
Identity = 42/85 (49.41%), Postives = 54/85 (63.53%), Query Frame = 1
Query:   82 EPLWLGLDLSTQSLTGAVLRGEGVGGSFNEPVVLE-SINFERDLPVEQRYGSKNGMTVTG---SQVTSPVAMWLHALEALLQRLK 324
            +PL+LGLDLSTQ L   V+       S +  VV E S+ F+RDLP   RYG+ NG  + G    +VTSPV MWL AL+ L+QR+K
Sbjct:    4 DPLFLGLDLSTQQLKAIVI-------SEDSAVVHEVSVGFDRDLP---RYGTMNG-ALKGPDEGEVTSPVGMWLEALDLLMQRMK 77          
BLAST of mRNA_S-dermatodea_contig8798.16932.1 vs. uniprot
Match: A0A2H3JJN9_WOLCO (Xylulose kinase n=1 Tax=Wolfiporia cocos (strain MD-104) TaxID=742152 RepID=A0A2H3JJN9_WOLCO)

HSP 1 Score: 63.9 bits (154), Expect = 1.280e-9
Identity = 41/89 (46.07%), Postives = 57/89 (64.04%), Query Frame = 1
Query:   70 DAAEEPLWLGLDLSTQSLTGAVLRGEGVGGSFNEPVVLES-INFERDLPVEQRYGSKNGMTVTG---SQVTSPVAMWLHALEALLQRLK 324
            D+ + PL+LGLDLSTQ L   ++       S +  VV ES ++F+RDLP   +YG+ NG  V G    +VTSPV MWL AL+ L++R+K
Sbjct:    5 DSGDSPLFLGLDLSTQGLKAVLI-------SEDSNVVHESAVHFDRDLP---QYGTTNG-AVRGPGIGEVTSPVRMWLEALDLLMERMK 82          
BLAST of mRNA_S-dermatodea_contig8798.16932.1 vs. uniprot
Match: A0A1Y2IWI0_PYCCO (Xylulose kinase n=2 Tax=Trametes TaxID=5324 RepID=A0A1Y2IWI0_PYCCO)

HSP 1 Score: 63.5 bits (153), Expect = 1.760e-9
Identity = 36/85 (42.35%), Postives = 53/85 (62.35%), Query Frame = 1
Query:   79 EEPLWLGLDLSTQSLTGAVLRGEGVGGSFNEPVVLESINFERDLPVEQRYGSKNGMTVTG---SQVTSPVAMWLHALEALLQRLK 324
            ++PL+LGLDLSTQ L   ++  +G       PV   S+NF+RDLP    YG+ NG  + G    +VTSPV MWL A + +++R++
Sbjct:    3 DDPLFLGLDLSTQGLKAVLIDADGA------PVHESSVNFDRDLP---SYGTTNG-AIRGPGAGEVTSPVRMWLDAYDLIMERMR 77          
BLAST of mRNA_S-dermatodea_contig8798.16932.1 vs. uniprot
Match: A0A0D2PHU6_HYPSF (Xylulose kinase n=1 Tax=Hypholoma sublateritium (strain FD-334 SS-4) TaxID=945553 RepID=A0A0D2PHU6_HYPSF)

HSP 1 Score: 63.2 bits (152), Expect = 2.390e-9
Identity = 42/87 (48.28%), Postives = 57/87 (65.52%), Query Frame = 1
Query:   73 AAEEPLWLGLDLSTQSLTGAVLRGEGVGGSFNEPVVLESINFERDLPVEQRYGSKNGMTVTG---SQVTSPVAMWLHALEALLQRLK 324
            A+ +PL+LGLDLSTQ +  AVL  E      +E V   +++F+RDLP   +YG+ NG  + G    +VTSPV MWL A++ LLQRLK
Sbjct:    4 ASAKPLFLGLDLSTQQIK-AVLLDE-----HSEIVHEAAVHFDRDLP---QYGTTNG-AIKGPDEGEVTSPVKMWLEAIDLLLQRLK 80          
BLAST of mRNA_S-dermatodea_contig8798.16932.1 vs. uniprot
Match: A0A067QD85_9AGAM (Xylulose kinase n=1 Tax=Jaapia argillacea MUCL 33604 TaxID=933084 RepID=A0A067QD85_9AGAM)

HSP 1 Score: 62.4 bits (150), Expect = 4.450e-9
Identity = 36/83 (43.37%), Postives = 54/83 (65.06%), Query Frame = 1
Query:   85 PLWLGLDLSTQSLTGAVLRGEGVGGSFNEPVVLESINFERDLPVEQRYGSKNGMTVTG---SQVTSPVAMWLHALEALLQRLK 324
            PL+LGLDLSTQSL G ++  +      +  V   S+ F++DLP   R+G+ NG  ++G    +VTSPV MWL A++ L++R+K
Sbjct:   11 PLFLGLDLSTQSLKGILIAED------SSVVTEHSVQFDKDLP---RFGTTNG-AISGPAEGEVTSPVEMWLEAIDLLMERMK 83          
BLAST of mRNA_S-dermatodea_contig8798.16932.1 vs. uniprot
Match: A0A0M0JKT4_9EUKA (Xylulose kinase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JKT4_9EUKA)

HSP 1 Score: 62.0 bits (149), Expect = 6.100e-9
Identity = 41/86 (47.67%), Postives = 51/86 (59.30%), Query Frame = 1
Query:   73 AAEEPLWLGLDLSTQSLTGAVLRGEGVGGSFNEPV-VLESINFERDLPVEQRYGSKNGMTV-TGSQVTSPVAMWLHALEALLQRLK 324
            A  + L+LGLDLSTQS+TG +L       S  +PV    S+NF+   P    YG+K GM+V     VTSPV MWL AL+AL   LK
Sbjct:   19 AKPDGLYLGLDLSTQSITGVLL------DSRLQPVRPATSVNFDNSFP---EYGTKAGMSVGKDGVVTSPVTMWLRALDALFDELK 95          
BLAST of mRNA_S-dermatodea_contig8798.16932.1 vs. uniprot
Match: A0A4S4L2L9_9AGAM (FGGY_N domain-containing protein (Fragment) n=1 Tax=Phellinidium pouzarii TaxID=167371 RepID=A0A4S4L2L9_9AGAM)

HSP 1 Score: 61.2 bits (147), Expect = 1.060e-8
Identity = 39/86 (45.35%), Postives = 55/86 (63.95%), Query Frame = 1
Query:   79 EEPLWLGLDLSTQSLTGAVLRGEGVGGSFNEPVVLES-INFERDLPVEQRYGSKNGMTVTGS---QVTSPVAMWLHALEALLQRLK 324
            E PL+LGLDLSTQ L   +    G+       V  E+ +NF+RDLP   ++G+K G  + GS   +VTSPVA+W+ AL+ LL+R+K
Sbjct:   43 ESPLFLGLDLSTQQLKAIIASANGL-------VEHETAVNFDRDLP---QFGTKGG-AIQGSRAGEVTSPVALWVAALDLLLERMK 117          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8798.16932.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5U6_ECTSI2.710e-4275.00FGGY_C domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A4S4LY18_9AGAM4.740e-1050.00FGGY_N domain-containing protein (Fragment) n=1 Ta... [more]
UPI0004416F3B6.890e-1046.51actin-like ATPase domain-containing protein n=1 Ta... [more]
W4K068_HETIT1.280e-949.41Xylulose kinase n=1 Tax=Heterobasidion irregulare ... [more]
A0A2H3JJN9_WOLCO1.280e-946.07Xylulose kinase n=1 Tax=Wolfiporia cocos (strain M... [more]
A0A1Y2IWI0_PYCCO1.760e-942.35Xylulose kinase n=2 Tax=Trametes TaxID=5324 RepID=... [more]
A0A0D2PHU6_HYPSF2.390e-948.28Xylulose kinase n=1 Tax=Hypholoma sublateritium (s... [more]
A0A067QD85_9AGAM4.450e-943.37Xylulose kinase n=1 Tax=Jaapia argillacea MUCL 336... [more]
A0A0M0JKT4_9EUKA6.100e-947.67Xylulose kinase n=1 Tax=Chrysochromulina tobinii T... [more]
A0A4S4L2L9_9AGAM1.060e-845.35FGGY_N domain-containing protein (Fragment) n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8798contigS-dermatodea_contig8798:2562..3494 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score154.1
Seed ortholog evalue3.8e-35
Seed eggNOG ortholog2880.D7G5U6
Preferred nameXYLB
KEGG rclassRC00002,RC00538
KEGG koko:K00854,ko:K14288,ko:K16732
KEGG ReactionR01639
KEGG Pathwayko00040,ko01100,ko03013,map00040,map01100,map03013
KEGG ModuleM00014
GOsGO:0003674,GO:0003824,GO:0004856,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0005997,GO:0005998,GO:0006063,GO:0006064,GO:0006082,GO:0006091,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009987,GO:0016052,GO:0016054,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019200,GO:0019321,GO:0019323,GO:0019585,GO:0019637,GO:0019640,GO:0019752,GO:0031982,GO:0032787,GO:0043226,GO:0043227,GO:0043230,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044262,GO:0044281,GO:0044282,GO:0044421,GO:0044424,GO:0044444,GO:0044464,GO:0046365,GO:0046395,GO:0046835,GO:0051167,GO:0070062,GO:0071704,GO:0072329,GO:0090407,GO:1901135,GO:1901137,GO:1901159,GO:1901575,GO:1901576,GO:1903561
EggNOG free text desc.xylulokinase activity
EggNOG OGsCOG1070@1,KOG2531@2759
EC2.7.1.17
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03016,ko03036,ko04812
Hectar predicted targeting categoryother localisation
Exons2
Model size325
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925367.1067898-CDS-S-dermatodea_contig8798:2562..26851622925367.1067898-CDS-S-dermatodea_contig8798:2562..2685Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8798 2563..2685 -
1694079885.2638285-CDS-S-dermatodea_contig8798:2562..26851694079885.2638285-CDS-S-dermatodea_contig8798:2562..2685Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8798 2563..2685 -
1622925367.1196153-CDS-S-dermatodea_contig8798:3293..34941622925367.1196153-CDS-S-dermatodea_contig8798:3293..3494Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8798 3294..3494 -
1694079885.276764-CDS-S-dermatodea_contig8798:3293..34941694079885.276764-CDS-S-dermatodea_contig8798:3293..3494Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8798 3294..3494 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8798.16932.1prot_S-dermatodea_contig8798.16932.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8798 2563..3494 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8798.16932.1

>prot_S-dermatodea_contig8798.16932.1 ID=prot_S-dermatodea_contig8798.16932.1|Name=mRNA_S-dermatodea_contig8798.16932.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=108bp
RAVRAHDDRSSRMFRMSKDGPRGDAAEEPLWLGLDLSTQSLTGAVLRGEG
VGGSFNEPVVLESINFERDLPVEQRYGSKNGMTVTGSQVTSPVAMWLHAL
EALLQRLK
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mRNA from alignment at S-dermatodea_contig8798:2562..3494-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8798.16932.1 ID=mRNA_S-dermatodea_contig8798.16932.1|Name=mRNA_S-dermatodea_contig8798.16932.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=933bp|location=Sequence derived from alignment at S-dermatodea_contig8798:2562..3494- (Saccorhiza dermatodea SderLu1190fm monoicous)
CGGGCCGTTCGTGCTCATGATGATCGCTCGTCGCGCATGTTCCGCATGTC CAAAGATGGTCCTCGTGGTGATGCGGCGGAGGAACCGCTGTGGCTTGGAC TGGACCTTAGCACCCAGAGCCTGACCGGAGCGGTGCTTCGCGGAGAGGGC GTGGGGGGGAGTTTCAACGAACCGGTGGTGCTCGAGTCGATCAACTTCGA GGTATGTGTGCGATTGTTCTTCGTGTTTTCCTGTCGCCAACAAGCCGAAG ATGCCTTAGTGTTTTGTATACTTGATATCACAGCTCTAATATTAGAGCTG TACTTGCATGTAACAAGTTGATCTGCGGTGTGCGGGGCCTTCAAGAGCCT CTCTCTAACTTGTTCATGCACTATAATATAATATTATTAATAGTATCATA GTTGTACGAGGTATTGTACTTGTATCATAGGGCTCAGCAGGCAGTTGATA TTTTGACGGGTGTGTGATTGAGTTGTGAGTATCACGCTACAACTGACAGG CCCACGGCATGCACCATGTTTCATGTTTCACCCATGTTCCGGAAATCATT CAAATACTGTACTTGCGTATAAGCTGCCTGGATATACTGGTATTAATATT ATCATACAAAAAAAAACGATTTAGATTTGGAAATAAGATGGTGTTTTTCT TGTCGCGATGTACGATTATATCGATTATATGAGTGCTTGTTCATCACCAA TAGCACAAATCCTTCAATTTATCTGTACTTGTAAAGTATATATATGGACA CAGGCGCCTGCTTCACGCTTGTATCGTCGGCTCGATCCCTTGCGCGCGAA TCTCTCAAGAGGGACCTTCCCGTGGAGCAGCGGTACGGCTCGAAGAATGG CATGACGGTTACCGGCTCTCAGGTCACGTCGCCCGTGGCCATGTGGTTGC ACGCCCTGGAGGCCCTCCTTCAACGACTCAAGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8798:2562..3494-

>mRNA_S-dermatodea_contig8798.16932.1 ID=mRNA_S-dermatodea_contig8798.16932.1|Name=mRNA_S-dermatodea_contig8798.16932.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at S-dermatodea_contig8798:2562..3494- (Saccorhiza dermatodea SderLu1190fm monoicous)
CGGGCCGTTCGTGCTCATGATGATCGCTCGTCGCGCATGTTCCGCATGTC
CAAAGATGGTCCTCGTGGTGATGCGGCGGAGGAACCGCTGTGGCTTGGAC
TGGACCTTAGCACCCAGAGCCTGACCGGAGCGGTGCTTCGCGGAGAGGGC
GTGGGGGGGAGTTTCAACGAACCGGTGGTGCTCGAGTCGATCAACTTCGA
GCGGGCCGTTCGTGCTCATGATGATCGCTCGTCGCGCATGTTCCGCATGT
CCAAAGATGGTCCTCGTGGTGATGCGGCGGAGGAACCGCTGTGGCTTGGA
CTGGACCTTAGCACCCAGAGCCTGACCGGAGCGGTGCTTCGCGGAGAGGG
CGTGGGGGGGAGTTTCAACGAACCGGTGGTGCTCGAGTCGATCAACTTCG
AGAGGGACCTTCCCGTGGAGCAGCGGTACGGCTCGAAGAATGGCATGACG
GTTACCGGCTCTCAGGTCACGTCGCCCGTGGCCATGTGGTTGCACGCCCT
GGAGGCCCTCCTTCAACGACTCAAGAGGGACCTTCCCGTGGAGCAGCGGT
ACGGCTCGAAGAATGGCATGACGGTTACCGGCTCTCAGGTCACGTCGCCC
GTGGCCATGTGGTTGCACGCCCTGGAGGCCCTCCTTCAACGACTCAAG
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