mRNA_S-dermatodea_contig8771.16921.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8771.16921.1
Unique NamemRNA_S-dermatodea_contig8771.16921.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8771.16921.1 vs. uniprot
Match: D8LAX5_ECTSI (Nfu_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAX5_ECTSI)

HSP 1 Score: 380 bits (977), Expect = 5.490e-126
Identity = 194/232 (83.62%), Postives = 207/232 (89.22%), Query Frame = 1 
Query:    1 PHLPAPWLTQ-SRGFFIQTDSTPNPNSLKFLPGRPVLPPDHGTGVYFTKGDREKSQSPLASALLTLDGVTGVFLGADFITISKGDGGGWTLMKPLVFGAIMDFYAEGKAVMLDAPVVTDTTILDDDDEVVAMIKELLQERVRPAVQEDGGDIFYKGFDPNTGIVTVQLAGSCSGCPSSTVTLKNGVENMLMHYIPEVTAVNAEEDEELLDVNEKEVNDLENRLKAAGVPFDP 693
            P   +PWL+Q SR FFIQT+ TPNPNSLKFLPGRPVLP +HGTGVYFT  DREKSQSPLA ALL+L+GV GVFLG DFITISK D GGWTLMKP+VFG IMDF+AEGK VML  PVVTDTTILDDDDEVVAMIKELLQERVRPAVQEDGGDIFY+GFDPNTG V VQLAGSC GCPSSTVTLKNGVE MLMHYIPEVTAVNA EDEEL  VN+KEVN+LE+RLKAAGVPF+P
Sbjct:   51 PRSRSPWLSQQSRSFFIQTEPTPNPNSLKFLPGRPVLPAEHGTGVYFTPDDREKSQSPLAVALLSLEGVAGVFLGTDFITISKHDEGGWTLMKPVVFGEIMDFFAEGKPVMLAEPVVTDTTILDDDDEVVAMIKELLQERVRPAVQEDGGDIFYRGFDPNTGTVNVQLAGSCVGCPSSTVTLKNGVEKMLMHYIPEVTAVNAVEDEELKQVNQKEVNELEDRLKAAGVPFEP 282
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BLAST of mRNA_S-dermatodea_contig8771.16921.1 vs. uniprot
Match: A0A1V9Y986_9STRA (Iron-sulfur cluster scaffold protein Nfu-like protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y986_9STRA)

HSP 1 Score: 282 bits (722), Expect = 6.240e-88
Identity = 146/228 (64.04%), Postives = 171/228 (75.00%), Query Frame = 1 
Query:    1 PHLPAPWLTQSRGFFIQTDSTPNPNSLKFLPGRPVLPPDHGTGVYFTKGDREKSQSPLASALLTLDGVTGVFLGADFITISKGDGGGWTLMKPLVFGAIMDFYAEGKAVMLDAPVVTDTTILDDDDEVVAMIKELLQERVRPAVQEDGGDIFYKGFDPNTGIVTVQLAGSCSGCPSSTVTLKNGVENMLMHYIPEVTAVNAEEDEELLDVNEKEVNDLENRLKAAGVP 684
            P   A +   +R  FIQT++TPNP+S+KFLPGR VL     TGV FT    E  QS LA  L T+ GVT VF G DFI+++K +   W L++  +F  IMDFYA GK VM D P++TDTTILDDDDEVVAMIKELL+ R+RPAVQ+DGGDIFYKGFD  TGIVTVQLAGSC+GCPSS+VTLKNGVENMLMHYIPEV  +    DEEL +VNEKE   LE RL+AAG+P
Sbjct:   38 PRQAAVFAVPARSMFIQTENTPNPHSIKFLPGRAVLDERFTTGVDFTPKSPEVRQSLLAKELFTIHGVTRVFFGKDFISVTKTEDEDWDLLRGQIFATIMDFYASGKPVMSDKPIITDTTILDDDDEVVAMIKELLETRIRPAVQDDGGDIFYKGFDEETGIVTVQLAGSCAGCPSSSVTLKNGVENMLMHYIPEVRGIKEFVDEELNEVNEKEFQSLEARLRAAGIP 265
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BLAST of mRNA_S-dermatodea_contig8771.16921.1 vs. uniprot
Match: A0A1V9Y8Q5_9STRA (Iron-sulfur cluster scaffold protein Nfu n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y8Q5_9STRA)

HSP 1 Score: 275 bits (703), Expect = 1.840e-84
Identity = 144/218 (66.06%), Postives = 165/218 (75.69%), Query Frame = 1 
Query:   31 SRGFFIQTDSTPNPNSLKFLPGRPVLPPDHGTGVYFTKGDREKSQSPLASALLTLDGVTGVFLGADFITISKGDGGGWTLMKPLVFGAIMDFYAEGKAVMLDAPVVTDTTILDDDDEVVAMIKELLQERVRPAVQEDGGDIFYKGFDPNTGIVTVQLAGSCSGCPSSTVTLKNGVENMLMHYIPEVTAVNAEEDEELLDVNEKEVNDLENRLKAAGVP 684
            SR  FIQT+STPNP+S+KFLPGRPVL     TGV FT    E  QS LA  L  +DGV  VF G DF++I+K +   W +++  +F  IMDFYA GK VMLD P +TDTTILDDDDEVVAMIKELL+ R+RPAVQ+DGGDIFYKGFD  TGIV VQLAGSC GC SS+VTLKNGVENMLMHYIPEVT V  E D+ L D+NE E   LE RL+AAG+P
Sbjct:   94 SRSMFIQTESTPNPHSIKFLPGRPVLDERFTTGVDFTPKAPEVRQSELARELFKIDGVNRVFFGKDFVSITKDEDEDWEMLRGQIFATIMDFYATGKPVMLDKPEITDTTILDDDDEVVAMIKELLETRIRPAVQDDGGDIFYKGFDEETGIVKVQLAGSCVGCASSSVTLKNGVENMLMHYIPEVTGVE-EVDDGLKDINENEFKTLEERLRAAGIP 310
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BLAST of mRNA_S-dermatodea_contig8771.16921.1 vs. uniprot
Match: A0A067CVC8_SAPPC (Nfu_N domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CVC8_SAPPC)

HSP 1 Score: 268 bits (685), Expect = 2.480e-82
Identity = 141/232 (60.78%), Postives = 170/232 (73.28%), Query Frame = 1 
Query:    1 PHLPAPWLTQSRGFFIQTDSTPNPNSLKFLPGRPVLPPDHGTGVYFTKGDREKSQSPLASALLTLDGVTGVFLGADFITISKGDGGGWTLMKPLVFGAIMDFYAEGKAVMLDAPVVTDTTILDDDDEVVAMIKELLQERVRPAVQEDGGDIFY----KGFDPNTGIVTVQLAGSCSGCPSSTVTLKNGVENMLMHYIPEVTAVNAEEDEELLDVNEKEVNDLENRLKAAGVP 684
            P + A +   SR  FIQT++TPNP+S+KFLPGR VL     TGV FT    E  QS LA  L T+ GVT VF   DFI+++K +   W L++  +F  IMDFYA GK +M D P++TDTTILDDDDEVVAMIKELL+ R+RPAVQ+DGGDIF     +GFD  TGIV+VQLAGSC+GCPSS+VTLKNGVENMLMHYIPEV  +    DEEL ++NEKE   LE RL+AAG+P
Sbjct:   40 PRMAAFFAVPSRSMFIQTENTPNPHSIKFLPGRAVLDERFTTGVDFTPKSPEVRQSLLAKELFTIHGVTRVFFSKDFISVTKTEDEDWDLLRGQIFATIMDFYATGKPIMSDQPIITDTTILDDDDEVVAMIKELLETRIRPAVQDDGGDIFTTPIRRGFDEETGIVSVQLAGSCAGCPSSSVTLKNGVENMLMHYIPEVQGILEVVDEELNEINEKEFQSLEARLRAAGIP 271
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BLAST of mRNA_S-dermatodea_contig8771.16921.1 vs. uniprot
Match: A0A6G0W9T7_9STRA (Nfu_N domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W9T7_9STRA)

HSP 1 Score: 264 bits (675), Expect = 8.140e-81
Identity = 134/216 (62.04%), Postives = 161/216 (74.54%), Query Frame = 1 
Query:   34 RGFFIQTDSTPNPNSLKFLPGRPVLPPDHGTGVYFTKGDREKSQSPLASALLTLDGVTGVFLGADFITISKGDGGGWTLMKPLVFGAIMDFYAEGKAVMLDAPVVTDTTILDDDDEVVAMIKELLQERVRPAVQEDGGDIFYKGFDPNTGIVTVQLAGSCSGCPSSTVTLKNGVENMLMHYIPEVTAVNAEEDEELLDVNEKEVNDLENRLKAAGV 681
            R  FIQT++TPNP SLKFLPGR VL     TGV FT    E  +S LA  L  + GV  VF G DFI+I+K D   W +++  +FG IMD+YA GK +M D  V+TDTTILDDDDEVVAMIKELL+ R+RPAVQ+DGGDI+Y+GFD  TGIV +QLAGSC+GCPSS++TLKNGVENMLMHYIPEV  +   EDEEL D+N KE   LE +L+ AG+
Sbjct:   57 RTMFIQTETTPNPQSLKFLPGRLVLDERFTTGVDFTPKGPELRRSLLAKDLFAISGVVRVFFGKDFISITKHDDEDWDVLRGQIFGTIMDYYASGKPIMTDEEVITDTTILDDDDEVVAMIKELLETRIRPAVQDDGGDIYYRGFDETTGIVKLQLAGSCAGCPSSSITLKNGVENMLMHYIPEVRGIQEVEDEELKDINNKEFQTLEEKLRKAGI 272
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BLAST of mRNA_S-dermatodea_contig8771.16921.1 vs. uniprot
Match: A0A485KKH5_9STRA (Aste57867_8521 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KKH5_9STRA)

HSP 1 Score: 263 bits (673), Expect = 1.720e-80
Identity = 137/225 (60.89%), Postives = 170/225 (75.56%), Query Frame = 1 
Query:   10 PAPWLTQSRGFFIQTDSTPNPNSLKFLPGRPVLPPDHGTGVYFTKGDREKSQSPLASALLTLDGVTGVFLGADFITISKGDGGGWTLMKPLVFGAIMDFYAEGKAVMLDAPVVTDTTILDDDDEVVAMIKELLQERVRPAVQEDGGDIFYKGFDPNTGIVTVQLAGSCSGCPSSTVTLKNGVENMLMHYIPEVTAVNAEEDEELLDVNEKEVNDLENRLKAAGVP 684
            P+ + T  R  FIQT++TPNP SLKFLPGRPVL  +  + V FT    E  +S LA  L T+ GVT VF G DFI+I+K +   W  ++  +FG IMDFYA GK +M D  V+TDTTILD+DDEVVAMIKELL+ R+RPAVQ+DGGDIFY+GFD + GIV +QLAGSC+GCPSS++TLKNGVENMLMHYIPEV  +    DEEL D+NE+E   LE++L+AAG+P
Sbjct:   52 PSLFATTVRTMFIQTETTPNPLSLKFLPGRPVLD-ERFSSVDFTPKGPELRRSLLAKDLFTIPGVTRVFFGKDFISITKQEDVDWDELRGQIFGTIMDFYASGKPIMTDEEVITDTTILDEDDEVVAMIKELLETRIRPAVQDDGGDIFYRGFDEDRGIVKLQLAGSCAGCPSSSITLKNGVENMLMHYIPEVRGIEEVVDEELKDLNEQEFKTLEDKLRAAGIP 275
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BLAST of mRNA_S-dermatodea_contig8771.16921.1 vs. uniprot
Match: K3WMX0_GLOUD (Nfu_N domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WMX0_GLOUD)

HSP 1 Score: 263 bits (673), Expect = 2.310e-80
Identity = 135/217 (62.21%), Postives = 160/217 (73.73%), Query Frame = 1 
Query:   31 SRGFFIQTDSTPNPNSLKFLPGRPVLPPDHGTGVYFTKGDREKSQSPLASALLTLDGVTGVFLGADFITISKGDGGGWTLMKPLVFGAIMDFYAEGKAVMLDAPVVTDTTILDDDDEVVAMIKELLQERVRPAVQEDGGDIFYKGFDPNTGIVTVQLAGSCSGCPSSTVTLKNGVENMLMHYIPEVTAVNAEEDEELLDVNEKEVNDLENRLKAAGV 681
            +R  FIQT+ TPNP S+KFLPG  VL     TGV FT G  E  +SPLA  L  ++GVT VF G DFI+++K +   W  +K  +F  IMDFYA G+ VM D PV+TDTTIL DDDEVVAMIKELL++R+RP+VQ+DGGDIFYKGFD  TGIV VQLAGSC+GCPSS+VTLKNGVENML HYIPEV  +    DE L  +NEKE    E +L+AAGV
Sbjct:   67 ARSMFIQTEPTPNPQSVKFLPGEVVLDDRFSTGVDFTPGSEEMRRSPLAKKLFQIEGVTRVFFGKDFISVTKDEDIDWDALKAEIFATIMDFYATGEDVMSDEPVITDTTILPDDDEVVAMIKELLEQRIRPSVQDDGGDIFYKGFDEATGIVHVQLAGSCAGCPSSSVTLKNGVENMLKHYIPEVRGIEEWVDEGLTQLNEKEFQTFEQKLRAAGV 283
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BLAST of mRNA_S-dermatodea_contig8771.16921.1 vs. uniprot
Match: K8Z7R9_NANGC (Iron-sulfur cluster scaffold protein nfu-like protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z7R9_NANGC)

HSP 1 Score: 263 bits (671), Expect = 3.410e-80
Identity = 131/210 (62.38%), Postives = 160/210 (76.19%), Query Frame = 1 
Query:    7 LPAPWLTQSRGFFIQTDSTPNPNSLKFLPGRPVLPPDHGTGVYFTKGDREKSQSPLASALLTLDGVTGVFLGADFITISKGDGGGWTLMKPLVFGAIMDFYAEGKAVMLDAPVVTDTTILDDDDEVVAMIKELLQERVRPAVQEDGGDIFYKGFDPNTGIVTVQLAGSCSGCPSSTVTLKNGVENMLMHYIPEVTAVNAEEDEELLDVNE 636
            L  P   Q R  FIQT+STPNP SLK++PG  VL   +GTG+YF +GD E ++SPLA  LL ++GV GVFLG  FITI+K  G  W  + P +F  +MD YAEG  ++ D  +V+DTTILD DDEVVAM+KEL++ R+RPAVQEDGGDIFY+GFDP +G+V+V+LAGSCSGCPSS VTLKNGVENMLMHYIPEV  +   ED+EL  VNE
Sbjct:   68 LAVPGHIQRRSMFIQTESTPNPESLKYVPGELVLDEKYGTGMYFRQGDMEVNRSPLAKKLLKIEGVMGVFLGRTFITITKSPGIIWQNLNPEIFATVMDHYAEGGVIVSDHAIVSDTTILDTDDEVVAMVKELMESRIRPAVQEDGGDIFYEGFDPESGLVSVRLAGSCSGCPSSAVTLKNGVENMLMHYIPEVKGIRQVEDDELNAVNE 277
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BLAST of mRNA_S-dermatodea_contig8771.16921.1 vs. uniprot
Match: A0A2D4C4T2_PYTIN (Iron-sulfur cluster scaffold protein Nfu-like protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C4T2_PYTIN)

HSP 1 Score: 262 bits (669), Expect = 6.770e-80
Identity = 131/216 (60.65%), Postives = 161/216 (74.54%), Query Frame = 1 
Query:   34 RGFFIQTDSTPNPNSLKFLPGRPVLPPDHGTGVYFTKGDREKSQSPLASALLTLDGVTGVFLGADFITISKGDGGGWTLMKPLVFGAIMDFYAEGKAVMLDAPVVTDTTILDDDDEVVAMIKELLQERVRPAVQEDGGDIFYKGFDPNTGIVTVQLAGSCSGCPSSTVTLKNGVENMLMHYIPEVTAVNAEEDEELLDVNEKEVNDLENRLKAAGV 681
            R  FIQT+ TPNP+S+KFLPGR VL     TGV FT G  E  +S LA  L  +DGVT VF G DF++++K +   W  ++  +F  IMDFYA G+ +M D P+VTDTTIL DDDEVVAMIKELL+ R+RP+VQEDGGDIFYKGFD  +GIV +QLAGSC+GCPSS+VTLKNGVENML HYIPEV  +   +D+EL  +NE E    E++L+AAGV
Sbjct:   59 RTMFIQTEPTPNPHSIKFLPGREVLDERFTTGVDFTPGSEEVRRSTLAKKLFQIDGVTRVFFGKDFVSVTKNEDEDWDALRSEIFATIMDFYATGEQIMSDEPIVTDTTILPDDDEVVAMIKELLETRIRPSVQEDGGDIFYKGFDEXSGIVKLQLAGSCAGCPSSSVTLKNGVENMLKHYIPEVRGIEEVQDDELNAINENEFKSFEDKLRAAGV 274
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BLAST of mRNA_S-dermatodea_contig8771.16921.1 vs. uniprot
Match: A0A8K1CQF8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CQF8_PYTOL)

HSP 1 Score: 261 bits (667), Expect = 1.220e-79
Identity = 133/216 (61.57%), Postives = 161/216 (74.54%), Query Frame = 1 
Query:   34 RGFFIQTDSTPNPNSLKFLPGRPVLPPDHGTGVYFTKGDREKSQSPLASALLTLDGVTGVFLGADFITISKGDGGGWTLMKPLVFGAIMDFYAEGKAVMLDAPVVTDTTILDDDDEVVAMIKELLQERVRPAVQEDGGDIFYKGFDPNTGIVTVQLAGSCSGCPSSTVTLKNGVENMLMHYIPEVTAVNAEEDEELLDVNEKEVNDLENRLKAAGV 681
            R  FIQT+STPNP SLKFLPGR VL     TGV FT G  E  +S LA  L  +DGVT VF G DFI+++K +   W  ++  +F +IMDF+A G+ VM D P+VTDTTIL DDDEVVAMIKELL+ R+RP+VQEDGGDIFYKGFD   GIV +QLAGSC+GCPSS+VTLKNGVENML HYIPEV  +    D+EL  +N++E    E++L+AAGV
Sbjct:   56 RSMFIQTESTPNPQSLKFLPGRVVLDERFTTGVDFTPGSEEVRRSALAKKLFQIDGVTRVFFGKDFISVTKQEDEDWDALRSEIFASIMDFFATGEEVMSDEPIVTDTTILPDDDEVVAMIKELLESRIRPSVQEDGGDIFYKGFDEEKGIVKLQLAGSCAGCPSSSVTLKNGVENMLKHYIPEVRGIEEVTDDELKALNDQEFKSFEDKLRAAGV 271
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8771.16921.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LAX5_ECTSI5.490e-12683.62Nfu_N domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A1V9Y986_9STRA6.240e-8864.04Iron-sulfur cluster scaffold protein Nfu-like prot... [more]
A0A1V9Y8Q5_9STRA1.840e-8466.06Iron-sulfur cluster scaffold protein Nfu n=1 Tax=T... [more]
A0A067CVC8_SAPPC2.480e-8260.78Nfu_N domain-containing protein n=2 Tax=Saprolegni... [more]
A0A6G0W9T7_9STRA8.140e-8162.04Nfu_N domain-containing protein n=1 Tax=Aphanomyce... [more]
A0A485KKH5_9STRA1.720e-8060.89Aste57867_8521 protein n=1 Tax=Aphanomyces stellat... [more]
K3WMX0_GLOUD2.310e-8062.21Nfu_N domain-containing protein n=1 Tax=Globispora... [more]
K8Z7R9_NANGC3.410e-8062.38Iron-sulfur cluster scaffold protein nfu-like prot... [more]
A0A2D4C4T2_PYTIN6.770e-8060.65Iron-sulfur cluster scaffold protein Nfu-like prot... [more]
A0A8K1CQF8_PYTOL1.220e-7961.57Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8771contigS-dermatodea_contig8771:1127..7064 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score246.9
Seed ortholog evalue5.7e-63
Seed eggNOG ortholog2880.D8LAX5
Preferred nameNFU4
KEGG koko:K22074
GOsGO:0000166,GO:0003674,GO:0005198,GO:0005488,GO:0005507,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006790,GO:0006807,GO:0006873,GO:0006875,GO:0006879,GO:0006880,GO:0008144,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016043,GO:0016226,GO:0017076,GO:0019538,GO:0019725,GO:0022607,GO:0030003,GO:0030554,GO:0031163,GO:0031974,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0042592,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046872,GO:0046914,GO:0046916,GO:0048878,GO:0050801,GO:0051179,GO:0051186,GO:0051235,GO:0051238,GO:0051604,GO:0051641,GO:0051651,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0097159,GO:0097367,GO:0097428,GO:0097577,GO:0098771,GO:0106035,GO:1901265,GO:1901363,GO:1901564
EggNOG free text desc.NFU1 iron-sulfur cluster scaffold
EggNOG OGsCOG0694@1,KOG2358@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionScaffold protein Nfu/NifU, N-terminal
Ec32 orthologEc-27_006080.1
Exons5
Model size1769
Cds size426
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925366.1957207-UTR-S-dermatodea_contig8771:1126..21991622925366.1957207-UTR-S-dermatodea_contig8771:1126..2199Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8771 1127..2199 -
1694079884.6073716-UTR-S-dermatodea_contig8771:1126..21991694079884.6073716-UTR-S-dermatodea_contig8771:1126..2199Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8771 1127..2199 -
1622925366.2455785-UTR-S-dermatodea_contig8771:5061..50851622925366.2455785-UTR-S-dermatodea_contig8771:5061..5085Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8771 5062..5085 -
1694079884.6414087-UTR-S-dermatodea_contig8771:5061..50851694079884.6414087-UTR-S-dermatodea_contig8771:5061..5085Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8771 5062..5085 -
1622925366.2590847-UTR-S-dermatodea_contig8771:5937..60221622925366.2590847-UTR-S-dermatodea_contig8771:5937..6022Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8771 5938..6022 -
1694079884.6496396-UTR-S-dermatodea_contig8771:5937..60221694079884.6496396-UTR-S-dermatodea_contig8771:5937..6022Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8771 5938..6022 -
1622925366.270112-UTR-S-dermatodea_contig8771:6903..70641622925366.270112-UTR-S-dermatodea_contig8771:6903..7064Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8771 6904..7064 -
1694079884.6577668-UTR-S-dermatodea_contig8771:6903..70641694079884.6577668-UTR-S-dermatodea_contig8771:6903..7064Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8771 6904..7064 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925366.2112834-CDS-S-dermatodea_contig8771:2199..23101622925366.2112834-CDS-S-dermatodea_contig8771:2199..2310Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8771 2200..2310 -
1694079884.6174417-CDS-S-dermatodea_contig8771:2199..23101694079884.6174417-CDS-S-dermatodea_contig8771:2199..2310Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8771 2200..2310 -
1622925366.2222426-CDS-S-dermatodea_contig8771:3492..36601622925366.2222426-CDS-S-dermatodea_contig8771:3492..3660Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8771 3493..3660 -
1694079884.6254663-CDS-S-dermatodea_contig8771:3492..36601694079884.6254663-CDS-S-dermatodea_contig8771:3492..3660Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8771 3493..3660 -
1622925366.232561-CDS-S-dermatodea_contig8771:4914..50611622925366.232561-CDS-S-dermatodea_contig8771:4914..5061Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8771 4915..5061 -
1694079884.6331363-CDS-S-dermatodea_contig8771:4914..50611694079884.6331363-CDS-S-dermatodea_contig8771:4914..5061Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8771 4915..5061 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8771.16921.1prot_S-dermatodea_contig8771.16921.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8771 2200..5061 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8771.16921.1

>prot_S-dermatodea_contig8771.16921.1 ID=prot_S-dermatodea_contig8771.16921.1|Name=mRNA_S-dermatodea_contig8771.16921.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=142bp
MKPLVFGAIMDFYAEGKAVMLDAPVVTDTTILDDDDEVVAMIKELLQERV
RPAVQEDGGDIFYKGFDPNTGIVTVQLAGSCSGCPSSTVTLKNGVENMLM
HYIPEVTAVNAEEDEELLDVNEKEVNDLENRLKAAGVPFDP*
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mRNA from alignment at S-dermatodea_contig8771:1127..7064-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8771.16921.1 ID=mRNA_S-dermatodea_contig8771.16921.1|Name=mRNA_S-dermatodea_contig8771.16921.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5938bp|location=Sequence derived from alignment at S-dermatodea_contig8771:1127..7064- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCCACCTCCCAGCCCCATGGCTCACGCAGTCTCGAGGCTTCTTCATCCA
GACGGATTCCACGCCCAACCCGAACTCACTCAAGTTCTTGCCCGGCCGAC
CGGTGCTGCCGCCGGATCACGGCACTGGCGTTTACTTTACTAAGGGGGAC
CGGGAAAAAAGGTGTGCGCTGTTTGTCGCCAGGATCTCTTACGCATAGAG
CCATATACATTACATAGACATACGTGTGGTCTACGAGTACATGTATTGCA
TTTCATATTGTATTGTATCGCGTGATTGTCTCTTGTTTCATCGCATCCTT
GTCGGGGTGATCCGCGAAGTTGTTCTTTTGCTCGGCGTCTGCTGTGTTTT
TGTGTCCCGGGGCATACTTGCACACGTGTAGCGAACGCGGGTGGTGAGTG
TGTACTGAACAACGACCATCGGTTTCGAAGGTAAGACAGATTGCCCAGCT
GTGTGTGCCTCTTGCTGGGATGGGCGGGGAGTCTCCGTGATCGTTAGCTA
TCGGAGGCGATCTGGCATCTTAAAATCGGTGGTGGGCAAGGCGTTCCTGA
GAGCCAGATCGGCGGCGTCTGCGCAAGAGAGACACGAAGCGTTTTTACCG
GTGTGGATGCTCTGACGGATGGTGATGTTTTCAAACCACATCGCGACGGC
TCGGAAACGCGTGCGTCCAGATGCCGTGGTTGCGTCAAGAGTAAATATGT
GTCGTTCTGTACTGCTGTACTGTCCCAACCGCCGTGCCGCGACGCCCGCT
TTGATTCTTTGTTGCTTGAGCCCCCCGTCCGATACAGTTGCCACCCCCCC
CCGCCGGTGCGAAACATTTTTGGGCCACCTTTGGCAGAGTAGGAAGGAAC
GATTGGCCATTGGCGATAGATCGATCGATTGATCCTGTCGGAACAATACT
CCGTCCTCTCGAGGACGCGTGGTCAATGGTCTCTAACAGCTAAGGCATTC
AAAACACGAGGACGCCCCGCCCCGCCCCGCCCCGCCCCGCCCCGGTGTCC
TTCAATCTGTGTAATGATCCGGACCTCACTTGGCCTATACAGCCAAAGCC
CTCTGGCGTCCGCTCTGCTCACCTTAGATGGGGTGACGGGGGTCTTCCTT
GGGGCAGACTTCATAACCATTTCGAAGGTGAGCATCCCGGCACGTGTCAT
GCCCTTCGCCCCAGTAGCTGCGGACGGACGTTTCGGGCCATATGGGTAGT
TTTAACTCATCGCGTTGTTGAGCGAGCGAAACGGCGATTTAGCGACCCCC
GACACCTCAAACCAAAACGAATCCCGTGCTGTTGAGTAGGGGTGTCTTTG
TTCCAGCACCTGCGTCGTCCCTTTTGATGAGCCAACAGCAACTCGTTGGT
TCAAACTAAAGGCCTTGCCCAAACGCGTTCCTTCAGCGACGGTAGCGAGT
CATGTCCGCGCGGATTTTTGCTCAAGCACCCGCTCAAGCACCCTTCTTCG
ACGAGGGTAGTGATGCTTGAGCAAAGGAAGATGTATCATTGTGGCAGCGC
CCAGCAGCGCAGCAGTGTTAGCGTCATCGATCCAACAGTATTCAATGGTT
CGTATAGAAGGCGATCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CGCCCGACCCCCCAAACACATTAAATTTTTTGTTGAATAAACAAAAGGAC
CGCGAAAGGGGCGGGGCCCACCCACCACAAACACAAAACAACCCAACNNN
NNNNNNNTGTATCCTCACGCCCCCACAAAGACTAAAGTTTTTTTAAAAAG
GGGGGCCCCCCCCCCCCCCCCCCCCCGCAGCGGCCCAGGGACGGCAACCC
TTAAGGTTTCAGAATTGGTTACGCTAAAGCAGGGCGAACAGGCTCGGGCC
AGGCTTTCAACACGCATCAAGACAGCCACTTCTTGGCACTTTGCGAATCG
GCATTGTCACGGGGTAACAGTTCCTCCTAACCCCACGTTCCTATCGTACG
CGCGCGCGCGTTGTGGCGTACTCGTTCAGGGGGACGGCGGCGGGTGGACG
CTGATGAAGCCCTTGGTTTTCGGAGCGATCATGGACTTCTACGCGGAGGG
AAAGGCGGTGATGCTCGATGCGCCGGTCGTGACTGACACGACTATCCTTG
ACGACGACGACGAGGTGGTGGCGATGATTAAGGAGCTTCTCCAGGAGCGG
GTGAGCTGGTGTGAACGGGTGCTGTGTGGGTCGAAATTTCGGGAAGTAAT
CGGAGGCTTCATGGTGGTTTGTTTTCCCTTCTGTTTTGCTGCTGATGTCG
AAAACTAGGTAAAAGTATTGCAACATTCCATTCCCGGGTTTCGTCGCGTT
GTGAACATCGCTCCCTAGCTCGCCCGACTATTACGAGGCACCATAGTACC
CAGGTCCAAATGTGTCACAAATCTTAACTTAGCAAAATATAATAGGCCGG
AATGATTAGATTGGGTATTAGTATTCACGGTCGGTGTTTGTATCATAGGG
TAGGCCAGGCCTCGTGTTGTGTGGTTCATGAGGTTTTGGTGTTGTTTGGA
TTGGATGTTCATGGTCGGACCAGTTGCGTATTTATGGTCGTGATATTTGG
TCCTGATTAGTTTTTTACTTGATTATAGTGTACCTCCGTAATAGTATTAT
TGTCATCCGTGCCTATCGCCCGTGCATCGATGTAAATTTCTAACGCTGGC
GCACGCGCCTGTCGTAGACGTTGGTTGCCGCTCTCCAGTATTTGCGGAGA
ATCGCCGGGCCGTTTGGCCCCGACCGCGGAGGCCGCACCATCGTTTGTTT
TGTTCGATGTTCGGCGGCTGGAGTATGCTCTTTGCCAAATCGTGCAGTGG
TTGGTTGTGTGGACAAGCCGGGCCGAGAAACACGCATGACGGCACGCCCA
CGAACGAACGCAATAGGCGTAGCATTTAGGCCGCATGGAGTTGTGCCTTA
GGGATGCGTACCCTCCAGAGTGACGATTTTGAATTTTCAAGTCGGACCTG
CTATCATAGGCGGCGTAAACGACTTGAGCTGCTCGCGCTATACTTTTTCC
CGTTCGATTGTTGCATTCTACACGGCAATGCATTTCTGTCCTGTCCCGCT
GTGATGGGCTGAAGTGGTGCACCACTTTTTATTAGATATGCCTTCTGCTT
GTTGGAGCAAAACCGGCAGAAGGACCGTGGCACCGCAGTGGAAGCCCCCA
TCGCCGTTGTTCCCCTTGCGATACAGCAAGCTAGCCTCTTACGCCCGGGT
GTACGTACGATTTCACCTGGGTGCTGTTTTTCAAGAGTGGAAAATACCTC
AGGACTCTCGAGCTGAAATAAAACCCCGCCGGAGATGTTTCCTCTCCCGT
ATTTGCGCGGTAGTGGCTCGACCTCAAACGAAAGACGATGAGTTTTGTCC
GGTTTGAGGCCTGACGTCTTCTCGTGCTGTTGTCGCTTGCGAACGGGTTT
TTAGGTGAGGCCGGCGGTCCAAGAAGACGGGGGAGACATCTTCTACAAGG
GGTTCGACCCTAACACCGGAATCGTTACGGTACAGCTGGCCGGTTCCTGC
TCGGGATGCCCCAGCTCGACGGTCACCCTCAAGAACGGAGTGGAGAACAT
GCTCATGCACTACATTCCCGAGGTGCATACAGTACTGCGCGCGCGTAGCC
TTACCCCCCCCCCCCCAAGTGTCATAACAATCCAGCCCCCTTGTATCACA
CGTCGACCTTCGCTCTCACCAGCAGCGTATGAACTGAAAACATATTTTCA
TGGACGGAAATGACTTTGGGGCATCCGTTGTGGTATTTGGTTGATTGTTC
GTTAAATTTGGGCAAAGCAACGACTAAAATGATACTGTCGTGTGCGACGA
AGAACCAGAGTCGGCCCCGTTTGGTGGGGACGTAGCCGCTGCTCTTCGGC
CGAACGCTCGCTTCCCGGTGCGATTCGGTTTGAGCCGGTTGTGGGGGGAC
GGGGGGCTCCTTTTGTTGATGCACTCTTAATAGCAAAGTATGCATGCCAC
GCTGTTTTGTTTCACGTTTTTGTCTTCGCTTTTTATCCGAGGTGCGTGTA
CATGCTACGCACGGGGCATTGATTGTTTCGCAATGAACGCAACGTGCATA
GAAGACGAGACGTGCGTGGCGTGGGTGCGTCAAGATACATGCATCAGGTG
CACCCGCACGATCGCCTCTGTGTGCATGCAAAACCTTCTCTGTGGGCTTG
GCTCTAGCGGCTTCTTACGCATCTGCCGCATTTTCTTATTCTTGGTGCTC
TGCATTGCCCGCCATACCGGCTTTGTACCTCTACGTGTCTCGTGCATGAC
CACCAAACTCCAGTGGAGTATAACAAGGCTTCGCTGTCGGCCGTTGTGGC
AGCCCGTTGTCGAGATACAGCCCGCGGCCACGTTGCAAGGGCCGCCTTCC
ATCGCGCGAAAGGTCGCAATCCGTTCGTGTCTTCTCGCGTATGGGCGCCG
AGAGTTTCCACGCACGGCGAACTTATACAGTACCAACGACATTTTCGCTA
AGTGTACAGACAGGTTGAACGCGCGTACGGCGTGGCAATCTTAGCTGGAA
GGAATAATATACACGCGCGGTCATGGATCGGGCGCGCCGTGCACCCTCAC
TTGCCTTTTTCTCGCCTTTATTTTGTCTTCCTTCGCCATGAGGATGTGTT
CGCCTGTCCCTTACCAATTTTAAGCACTATAATCGACGCTGTCGGAGGCG
AGCGTGCATCGTAGCCACCAGCCCCGGCCGCGTCATCCGAGCAATTCCGA
TTCACTCCCTAGCCTGGCAAATTTCACCTCACGCTTTTTTTGTATTTGCG
TTAGGTAACGGCCGTCAATGCCGAGGAGGACGAAGAGCTCTTGGATGTGA
ACGAGAAGGAGGTGAACGACCTGGAGAATCGCCTCAAGGCGGCCGGGGTA
CCGTTCGACCCTTGACCCGCCCAAAGGTGTCCTGCGCCCCCTTGGAAGTC
GATTTGTGTTCCGGCCCCGACTACAGCATCCGCGCGTAGGTGTCGAGTCG
GACAGGCTCGTTTCTCCGGTCTAGTTGCCTGCTCGACAAAGGAAGTGGAG
TCCGGCGGAATGTAGGGTGGAACAAGAGACTGCTTGGGTTGCTGGTCTGT
CAATGCAGCTTGGGATGTGCTTTGTTGTCAACTTGCGAGAGGGTCGGGTC
TGATGGCGAGTGTTTTTGAAGCGCAGATACGTTTGCTCAGCGGGTGGGTA
TTTAGAAATGGCGCATTTTTCCTTACGTGTTGGTCGCGCAGCGCTAAGAG
CGCTGCGGTGCTCAGGTATGGTGTTTCCGCTGCGCGTTGGATACCTGTGT
TGTGCGAGGGATTGTGTATTTTTAACACCCGTTAATGACCGAACAGGGAC
AAGTAGCTCCTCTATGTAATGGATTATTGTTGGCATCACGTGTGCCAGCA
TAGCATTGTCGCTTACACATCTGCACTCAAAAAGGCGGCGCCAAACCAGT
ATCTCCTTCCTCGACGTATCTGACTCAAATGTGTTAACAAGAAGTGTTGG
GGGCGCCTCTCCGCGGGATGCACGGAGTAGGCAGATCCCACACTACAAGC
GGTCCAATACTGCCACTGACCCCGAGAGGAACCGAGCACACTCTCCGCCT
GTGACCTACTTTGGAACATTAAGCTAGCACATCGCGTTTAAATGCAATGG
CAGGGTAGTCATATGTTGCTTCCCAGTGCTGCCCGCCGGTCTCCATCTGG
TGGTAAGCTGTCCTTGGCTAGGTGCCACACACGTACGTACGTGTGCTTGT
CGGCAGACACGTCACGCCTCGTTGCGGGCGCCGTGTTGCTCGGTGGAAAT
CTTACGCGTCAAGGAGATCCGACCTTGTTCCGTGTTCGAGCGAGTCGGTT
TCGCGCATGGGCGCTCGCGGCACGCGCCGGTTGGTCAACAGGTCTCCTCT
GCAGGCGGCAGGACCCAGCAAGCCGCCCGCGTGGTAGTAGTACAGCGCTT
CTACGATTGGACAGCTAGAACCTTTGAAAACAGACCCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig8771:1127..7064-

>mRNA_S-dermatodea_contig8771.16921.1 ID=mRNA_S-dermatodea_contig8771.16921.1|Name=mRNA_S-dermatodea_contig8771.16921.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=852bp|location=Sequence derived from alignment at S-dermatodea_contig8771:1127..7064- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAAGCCCTTGGTTTTCGGAGCGATCATGGACTTCTACGCGGAGGGAAA
GGCGGTGATGCTCGATGCGCCGGTCGTGACTGACACGACTATCCTTGACG
ACGACGACGAGGTGGTGGCGATGATTAAGGAGCTTCTCCAGGAGCGGATG
AAGCCCTTGGTTTTCGGAGCGATCATGGACTTCTACGCGGAGGGAAAGGC
GGTGATGCTCGATGCGCCGGTCGTGACTGACACGACTATCCTTGACGACG
ACGACGAGGTGGTGGCGATGATTAAGGAGCTTCTCCAGGAGCGGGTGAGG
CCGGCGGTCCAAGAAGACGGGGGAGACATCTTCTACAAGGGGTTCGACCC
TAACACCGGAATCGTTACGGTACAGCTGGCCGGTTCCTGCTCGGGATGCC
CCAGCTCGACGGTCACCCTCAAGAACGGAGTGGAGAACATGCTCATGCAC
TACATTCCCGAGGTGAGGCCGGCGGTCCAAGAAGACGGGGGAGACATCTT
CTACAAGGGGTTCGACCCTAACACCGGAATCGTTACGGTACAGCTGGCCG
GTTCCTGCTCGGGATGCCCCAGCTCGACGGTCACCCTCAAGAACGGAGTG
GAGAACATGCTCATGCACTACATTCCCGAGGTAACGGCCGTCAATGCCGA
GGAGGACGAAGAGCTCTTGGATGTGAACGAGAAGGAGGTGAACGACCTGG
AGAATCGCCTCAAGGCGGCCGGGGTACCGTTCGACCCTTGAGTAACGGCC
GTCAATGCCGAGGAGGACGAAGAGCTCTTGGATGTGAACGAGAAGGAGGT
GAACGACCTGGAGAATCGCCTCAAGGCGGCCGGGGTACCGTTCGACCCTT
GA
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