mRNA_S-dermatodea_contig87701.16920.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig87701.16920.1
Unique NamemRNA_S-dermatodea_contig87701.16920.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig87701.16920.1 vs. uniprot
Match: A0A6H5K160_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K160_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.960e-12
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 QTLYMPSTEPVPTCPASLMPSEDWERDVLSTFVDLRQ 111
            QT+YMPSTEPVP CP  L+PSE+WER+VLSTFVDLRQ
Sbjct:   66 QTVYMPSTEPVPACPEYLLPSEEWEREVLSTFVDLRQ 102
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BLAST of mRNA_S-dermatodea_contig87701.16920.1 vs. uniprot
Match: D7FMN9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMN9_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 1.410e-11
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:    1 QTLYMPSTEPVPTCPASLMPSEDWERDVLSTFVDLRQ 111
            +TLYMPSTEPVP CP  L+PSE+WE +VLSTFVDLRQ
Sbjct:   22 ETLYMPSTEPVPACPEYLLPSEEWELEVLSTFVDLRQ 58
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig87701.16920.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K160_9PHAE1.960e-1281.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMN9_ECTSI1.410e-1178.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig87701contigS-dermatodea_contig87701:28..150 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size123
Cds size111
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925366.1332674-UTR-S-dermatodea_contig87701:27..391622925366.1332674-UTR-S-dermatodea_contig87701:27..39Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig87701 28..39 +
1694079884.5842113-UTR-S-dermatodea_contig87701:27..391694079884.5842113-UTR-S-dermatodea_contig87701:27..39Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig87701 28..39 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925366.1471472-CDS-S-dermatodea_contig87701:39..1501622925366.1471472-CDS-S-dermatodea_contig87701:39..150Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig87701 40..150 +
1694079884.597541-CDS-S-dermatodea_contig87701:39..1501694079884.597541-CDS-S-dermatodea_contig87701:39..150Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig87701 40..150 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig87701.16920.1prot_S-dermatodea_contig87701.16920.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig87701 40..150 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig87701.16920.1

>prot_S-dermatodea_contig87701.16920.1 ID=prot_S-dermatodea_contig87701.16920.1|Name=mRNA_S-dermatodea_contig87701.16920.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=37bp
MPSTEPVPTCPASLMPSEDWERDVLSTFVDLRQVQL*
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mRNA from alignment at S-dermatodea_contig87701:28..150+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig87701.16920.1 ID=mRNA_S-dermatodea_contig87701.16920.1|Name=mRNA_S-dermatodea_contig87701.16920.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=123bp|location=Sequence derived from alignment at S-dermatodea_contig87701:28..150+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGACGTTGTACATGCCTTCGACGGAGCCTGTACCGACGTGTCCGGCATC
GTTGATGCCAAGCGAGGATTGGGAGAGGGATGTGCTATCCACCTTCGTCG
ACCTTCGCCAGGTGCAGTTATGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig87701:28..150+

>mRNA_S-dermatodea_contig87701.16920.1 ID=mRNA_S-dermatodea_contig87701.16920.1|Name=mRNA_S-dermatodea_contig87701.16920.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=222bp|location=Sequence derived from alignment at S-dermatodea_contig87701:28..150+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCTTCGACGGAGCCTGTACCGACGTGTCCGGCATCGTTGATGCCAAG
CGAGGATTGGGAGAGGGATGTGCTATCCACCTTCGTCGACCTTCGCCAGG
TGCAGTTATGAATGCCTTCGACGGAGCCTGTACCGACGTGTCCGGCATCG
TTGATGCCAAGCGAGGATTGGGAGAGGGATGTGCTATCCACCTTCGTCGA
CCTTCGCCAGGTGCAGTTATGA
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