mRNA_S-dermatodea_contig8766.16915.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8766.16915.1
Unique NamemRNA_S-dermatodea_contig8766.16915.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8766.16915.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8766contigS-dermatodea_contig8766:4610..5223 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size614
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8766.16915.1prot_S-dermatodea_contig8766.16915.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8766 4779..5099 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925365.5648391-UTR-S-dermatodea_contig8766:4609..47781622925365.5648391-UTR-S-dermatodea_contig8766:4609..4778Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8766 4610..4778 +
1694079884.1404064-UTR-S-dermatodea_contig8766:4609..47781694079884.1404064-UTR-S-dermatodea_contig8766:4609..4778Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8766 4610..4778 +
1622925365.585721-UTR-S-dermatodea_contig8766:5099..52231622925365.585721-UTR-S-dermatodea_contig8766:5099..5223Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8766 5100..5223 +
1694079884.1752222-UTR-S-dermatodea_contig8766:5099..52231694079884.1752222-UTR-S-dermatodea_contig8766:5099..5223Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8766 5100..5223 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925365.57549-CDS-S-dermatodea_contig8766:4778..50991622925365.57549-CDS-S-dermatodea_contig8766:4778..5099Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8766 4779..5099 +
1694079884.1559358-CDS-S-dermatodea_contig8766:4778..50991694079884.1559358-CDS-S-dermatodea_contig8766:4778..5099Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8766 4779..5099 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8766.16915.1

>prot_S-dermatodea_contig8766.16915.1 ID=prot_S-dermatodea_contig8766.16915.1|Name=mRNA_S-dermatodea_contig8766.16915.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=107bp
MISEHLECSRAGSLRARWRCRRRPAKVGASIVSNASETPTGNGNGRHIVM
PGKRRQHVECALTVNQSKRSALLHERQSDHCSENKNSTYTSLGTFYAVGL
ASVGNP*
back to top

mRNA from alignment at S-dermatodea_contig8766:4610..5223+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8766.16915.1 ID=mRNA_S-dermatodea_contig8766.16915.1|Name=mRNA_S-dermatodea_contig8766.16915.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=614bp|location=Sequence derived from alignment at S-dermatodea_contig8766:4610..5223+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCTAGTTATTTCGGATTATGTTGCGCTGGAGAGCGCTGTCGATCCGTGTG
TGGCGCAAAGAGCGCGGGCCGAGCACACAGACTGCCCACATATTCGGAAC
ACATGGCAGATCAAACAAAAACAACTTCTACATGTAGCGTTGTGCCGTTC
TGGGACGGCCGTGCGAACTATGATATCGGAACACCTCGAATGTTCGCGAG
CAGGGTCATTGCGGGCCCGTTGGCGTTGTAGGCGCAGGCCCGCAAAGGTC
GGGGCCAGCATAGTGAGTAATGCTTCGGAAACACCAACCGGAAACGGAAA
TGGCAGGCATATAGTTATGCCCGGGAAGCGCCGCCAGCACGTGGAATGTG
CCCTGACTGTAAATCAATCGAAACGCTCAGCTTTGTTGCATGAAAGGCAA
AGCGATCATTGCAGCGAAAACAAAAATTCTACTTATACAAGTCTTGGTAC
GTTTTATGCGGTTGGCTTGGCATCGGTCGGCAACCCATAAATGGAATAAT
ATATGCCAAGGTCCCTGAGAATTAGGGAAGCCGACGGCCTATCCAGGGAA
GGTGGTATGCAGCAACCGTTGAACGCAGAGCCCAAGAGACAATGAAAACA
GCTGGCACCACACA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig8766:4610..5223+

>mRNA_S-dermatodea_contig8766.16915.1 ID=mRNA_S-dermatodea_contig8766.16915.1|Name=mRNA_S-dermatodea_contig8766.16915.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at S-dermatodea_contig8766:4610..5223+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATATCGGAACACCTCGAATGTTCGCGAGCAGGGTCATTGCGGGCCCG
TTGGCGTTGTAGGCGCAGGCCCGCAAAGGTCGGGGCCAGCATAGTGAGTA
ATGCTTCGGAAACACCAACCGGAAACGGAAATGGCAGGCATATAGTTATG
CCCGGGAAGCGCCGCCAGCACGTGGAATGTGCCCTGACTGTAAATCAATC
GAAACGCTCAGCTTTGTTGCATGAAAGGCAAAGCGATCATTGCAGCGAAA
ACAAAAATTCTACTTATACAAGTCTTGGTACGTTTTATGCGGTTGGCTTG
GCATCGGTCGGCAACCCATAAATGATATCGGAACACCTCGAATGTTCGCG
AGCAGGGTCATTGCGGGCCCGTTGGCGTTGTAGGCGCAGGCCCGCAAAGG
TCGGGGCCAGCATAGTGAGTAATGCTTCGGAAACACCAACCGGAAACGGA
AATGGCAGGCATATAGTTATGCCCGGGAAGCGCCGCCAGCACGTGGAATG
TGCCCTGACTGTAAATCAATCGAAACGCTCAGCTTTGTTGCATGAAAGGC
AAAGCGATCATTGCAGCGAAAACAAAAATTCTACTTATACAAGTCTTGGT
ACGTTTTATGCGGTTGGCTTGGCATCGGTCGGCAACCCATAA
back to top