mRNA_S-dermatodea_contig8761.16913.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig8761.16913.1 vs. uniprot
Match: A0A6H5K2R2_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R2_9PHAE) HSP 1 Score: 144 bits (364), Expect = 4.870e-38 Identity = 67/124 (54.03%), Postives = 86/124 (69.35%), Query Frame = 2
Query: 2 VMSRMNRYVANVPGTDAFWLTARKKLEDAYAQLDSLTTFDTYSMADLHWRDLHRLMPGF--DAENPPDRRERTRSLIANPALANWWFNERLKLWQKFFLGPRMANRIWSWARIEWQSRGSAHCH 367
+M+ M+RY AN+PGTD FW + +LE+A QL SLT F TYS AD HW DLHRLMPG+ D ++ P ++RT+ LI NP LA+WWF +RL+ W+ FLG M ++ W W R EWQSR S H H
Sbjct: 385 IMTHMSRYTANLPGTDGFWQKEQGRLENAVDQLQSLTVFTTYSAADHHWYDLHRLMPGYKEDDDDKPTPQQRTQWLIDNPHLADWWFWQRLQEWKGVFLGRDMGDQRWQWDRAEWQSRASLHVH 508
BLAST of mRNA_S-dermatodea_contig8761.16913.1 vs. uniprot
Match: A0A6H5K692_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K692_9PHAE) HSP 1 Score: 129 bits (325), Expect = 1.970e-32 Identity = 66/123 (53.66%), Postives = 75/123 (60.98%), Query Frame = 2
Query: 20 RYVANVPGTDAFWLTARKKLEDAYAQLDSLTTFDTYSMADLHWRDLHRLMPGFDAENPPDR-------RERTRSLIANPALANWWFNERLKLWQKFFLGPRMANRIWSWARIEWQSRGSAHCH 367
RYVANVPGTD +W+ + KLED+ QL SLTTF TYS A+ HW DL RLMP E P ERTR LI NP LA+WW ER+ + FLG MA+ W W R EWQSR S H H
Sbjct: 493 RYVANVPGTDGYWMRWQGKLEDSLNQLQSLTTFTTYSAANHHWYDLFRLMPASGPEPAPGEGGLIRPVAERTRPLIDNPHLADWWIWERMHKLDEIFLGNAMADASWFWMRAEWQSRASLHIH 615
BLAST of mRNA_S-dermatodea_contig8761.16913.1 vs. uniprot
Match: A0A3M7P2T5_BRAPC (ATP-dependent DNA helicase pif1 (Fragment) n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7P2T5_BRAPC) HSP 1 Score: 97.4 bits (241), Expect = 9.110e-22 Identity = 48/122 (39.34%), Postives = 70/122 (57.38%), Query Frame = 2
Query: 2 VMSRMNRYVANVPGTDAFWLTARKKLEDAYAQLDSLTTFDTYSMADLHWRDLHRLMPGFDAENPPDRRERTRSLIANPALANWWFNERLKLWQKFFLGPRMANRIWSWARIEWQSRGSAHCH 367
++ RM Y AN+ G++A+W R +LE + Q T F T+S AD HW DLHRL+PG + +P ++R +++ NP L +W+F RL + K + + W W R EWQSR S H H
Sbjct: 81 LLRRMTPYSANITGSNAYWFQRRSELESTFEQKKPATVFFTFSYADNHWEDLHRLLPGGFSTDP---KKRYLNVLNNPHLVDWYFGIRLNEFLKIVFDG-ILDCEWRWHRYEWQSRSSIHAH 198
BLAST of mRNA_S-dermatodea_contig8761.16913.1 vs. uniprot
Match: A0A3M7RLM2_BRAPC (ATP-dependent DNA helicase PIF1 n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7RLM2_BRAPC) HSP 1 Score: 96.3 bits (238), Expect = 6.240e-21 Identity = 49/123 (39.84%), Postives = 72/123 (58.54%), Query Frame = 2
Query: 2 VMSRMNRYVANVPGTDAFWLTARKKLEDAYAQLDSLTTFDTYSMADLHWRDLHRLMPGFDAENPPDRRERTRSLIANPALANWWFNERL-KLWQKFFLGPRMANRIWSWARIEWQSRGSAHCH 367
++ RM Y AN+ G++A+W R +LE + Q T F T+S AD HW DLHRL+PG +++P + R ++++ NP L +W+F+ RL + Q F G W W R EWQ+R S H H
Sbjct: 140 ILKRMTPYSANITGSNAYWYQRRCELETTFEQKKPATIFFTFSYADNHWIDLHRLLPGGYSDDP---KVRYKNVLRNPHLVDWYFSVRLNEFLQIVFDGTLQCE--WRWHRYEWQARSSIHAH 257
BLAST of mRNA_S-dermatodea_contig8761.16913.1 vs. uniprot
Match: UPI001069F53B (uncharacterized protein LOC114526533 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI001069F53B) HSP 1 Score: 95.5 bits (236), Expect = 1.890e-20 Identity = 45/121 (37.19%), Postives = 77/121 (63.64%), Query Frame = 2
Query: 5 MSRMNRYVANVPGTDAFWLTARKKLEDAYAQLDSLTTFDTYSMADLHWRDLHRLMPGFDAENPPDRRERTRSLIANPALANWWFNERLKLWQKFFLGPRMANRIWSWARIEWQSRGSAHCH 367
+S+++RYVAN+ G++A+W R+ L+ + + T F T+S AD+HW +LHRL+ + + ER +++I NP L +W+F +R++ + K +L + + W W R E+Q+RGS HCH
Sbjct: 307 ISKISRYVANIAGSNAYWYKVREDLKAIVTTVGTPTFFFTFSSADMHWPELHRLLGNRNGTSE----ERLQAVIKNPHLVDWFFTQRVESFIKHWLYKTLDAK-WHWYRFEYQARGSIHCH 422
BLAST of mRNA_S-dermatodea_contig8761.16913.1 vs. uniprot
Match: A0A3M7T2K9_BRAPC (ATP-dependent DNA helicase pif1 n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7T2K9_BRAPC) HSP 1 Score: 88.6 bits (218), Expect = 1.810e-19 Identity = 47/121 (38.84%), Postives = 68/121 (56.20%), Query Frame = 2
Query: 5 MSRMNRYVANVPGTDAFWLTARKKLEDAYAQLDSLTTFDTYSMADLHWRDLHRLMPGFDAENPPDRRERTRSLIANPALANWWFNERLKLWQKFFLGPRMANRIWSWARIEWQSRGSAHCH 367
M RM Y +N+ G+D++ R +LE + Q T F T+S AD HW DLHRLMPG + D+ +R ++++ NP L +W+F RL + K + + W W R EWQSR + H H
Sbjct: 1 MKRMTAYSSNITGSDSY--KRRTELEATFEQKGCATVFFTFSYADNHWHDLHRLMPG---QFTLDKNKRYQNVLNNPHLVDWYFTFRLNEFLKVVFDG-ILDCEWRWHRYEWQSRSTIHAH 115
BLAST of mRNA_S-dermatodea_contig8761.16913.1 vs. uniprot
Match: A0A397J1K6_9GLOM (Helitron_like_N domain-containing protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397J1K6_9GLOM) HSP 1 Score: 83.6 bits (205), Expect = 2.100e-16 Identity = 47/121 (38.84%), Postives = 66/121 (54.55%), Query Frame = 2
Query: 8 SRMNRYVANVPGTDAFWLTARKKLEDAYAQLDSL-TTFDTYSMADLHWRDLHRLMPGFDAENPPDRRERTRSLIANPALANWWFNERLKLWQKFFLGPRMANRIWSWARIEWQSRGSAHCH 367
+R+ RY + G+ FW+ R +L D QL S F T+S ADLHW +LH+LMPG + DR+ ++LI NP + W+FN+ + + L + W W R EWQ RGS H H
Sbjct: 3 NRIMRYGEGLRGSRQFWMARRYELSDIIKQLGSRGIIFFTFSSADLHWPELHKLMPGGNLAVSTDRQ---KNLIDNPHVTAWFFNKCFETFFNNVLKQHWNLKKW-WYRFEWQHRGSVHVH 119
BLAST of mRNA_S-dermatodea_contig8761.16913.1 vs. uniprot
Match: A0A2Z6QFX4_9GLOM (ATP-dependent DNA helicase n=2 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6QFX4_9GLOM) HSP 1 Score: 78.6 bits (192), Expect = 1.690e-14 Identity = 43/123 (34.96%), Postives = 66/123 (53.66%), Query Frame = 2
Query: 2 VMSRMNRYVANVPGTDAFWLTARKKLEDAYAQLDSL-TTFDTYSMADLHWRDLHRLMPGFDAENPPDRRERTRSLIANPALANWWFNERLKLWQKFFLGPRMANRIWSWARIEWQSRGSAHCH 367
+ R+ + + G+ FW + R +L D Q+ S F T+S ADLHW +LHRLMP D D+ + +++I N +A W+F++R +++ L + W W R EWQ RGS H H
Sbjct: 517 IADRIMXFGEGLRGSRQFWNSRRYELTDMIKQIGSQGLIFFTFSAADLHWPELHRLMPPSDNSEASDK-TKLQNIIDNXHIATWFFSKRFEIFFNDVLKEQWDLEDW-WYRFEWQHRGSVHVH 637
BLAST of mRNA_S-dermatodea_contig8761.16913.1 vs. uniprot
Match: A0A2Z6QJZ3_9GLOM (ATP-dependent DNA helicase n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6QJZ3_9GLOM) HSP 1 Score: 76.6 bits (187), Expect = 7.760e-14 Identity = 42/110 (38.18%), Postives = 61/110 (55.45%), Query Frame = 2
Query: 41 GTDAFWLTARKKLEDAYAQLDSL-TTFDTYSMADLHWRDLHRLMPGFDAENPPDRRERTRSLIANPALANWWFNERLKLWQKFFLGPRMANRIWSWARIEWQSRGSAHCH 367
G+ FW + R +L D Q+ S F T+S ADLHW +LHRLMP D D+ + +++I N +A W+F++R +++ L + W W R EWQ RGS H H
Sbjct: 23 GSRQFWNSRRYELTDMIKQIGSQGLIFFTFSAADLHWPELHRLMPPSDNSEASDK-TKLQNIIDNLHIATWFFSKRFEIFFNDVLKEQWDLEDW-WYRFEWQHRGSVHVH 130
BLAST of mRNA_S-dermatodea_contig8761.16913.1 vs. uniprot
Match: A0A2Z6QDE6_9GLOM (Helitron_like_N domain-containing protein n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6QDE6_9GLOM) HSP 1 Score: 74.7 bits (182), Expect = 3.500e-13 Identity = 45/120 (37.50%), Postives = 62/120 (51.67%), Query Frame = 2
Query: 11 RMNRYVANVPGTDAFWLTARKKLEDAYAQLDSL-TTFDTYSMADLHWRDLHRLMPGFDAENPPDRRERTRSLIANPALANWWFNERLKLWQKFFLGPRMANRIWSWARIEWQSRGSAHCH 367
R+ RY ++ GT FW+ R +L D Q+ F T+S AD HW +LHRLMP D E+ R +I NP +A W+F +R + + L + W W + EWQ RGS H H
Sbjct: 294 RIMRYRESLQGTRQFWIARRGELLDIIKQIGHRGLIFFTFSAADFHWPNLHRLMP--DDEDAQSR------VINNPHIAAWFFTKRFESFFNNMLKEKWDLEDW-WFQYEWQYRGSVHVH 404 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8761.16913.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig8761.16913.1 >prot_S-dermatodea_contig8761.16913.1 ID=prot_S-dermatodea_contig8761.16913.1|Name=mRNA_S-dermatodea_contig8761.16913.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=121bp MSRMNRYVANVPGTDAFWLTARKKLEDAYAQLDSLTTFDTYSMADLHWRDback to top mRNA from alignment at S-dermatodea_contig8761:451..988- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig8761.16913.1 ID=mRNA_S-dermatodea_contig8761.16913.1|Name=mRNA_S-dermatodea_contig8761.16913.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=538bp|location=Sequence derived from alignment at S-dermatodea_contig8761:451..988- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig8761:451..988- >mRNA_S-dermatodea_contig8761.16913.1 ID=mRNA_S-dermatodea_contig8761.16913.1|Name=mRNA_S-dermatodea_contig8761.16913.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at S-dermatodea_contig8761:451..988- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |