mRNA_S-dermatodea_contig1277.1691.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig1277.1691.1 vs. uniprot
Match: D7FP33_ECTSI (E3 ubiquitin-protein ligase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP33_ECTSI) HSP 1 Score: 214 bits (546), Expect = 1.530e-55 Identity = 141/412 (34.22%), Postives = 207/412 (50.24%), Query Frame = 2
Query: 569 GFLEEPDAFMAD--DESLAFEEAFPRCKVLRSSMLTVNQTGVDNGDVQALSATFLATWLDNPEGEANEDDTF------LFTQFVEAYFIDVERGPNALDGKPIDAFLPYERLTPVGNTTNPTLLNHMVLTFTEFTRLTKSGTKRETDKIYTQRTTSGRAHLYLEDDFPSTDEVAFLLFQMVINKFEFSSVDEVDPLNPWATIGAIGGAWQYVVLAFGLFCVFSEKQLPEFKMRDFKQMTWKPANPFARAASTTSNAPT--------------------------------------KPTIGPRAAESQGSASTATWGMSNR-----------------GDVGGDILPPGWVMRSDGEGRTYYKNTLLKTTQWEPPYQ--RDQSCRGGTVQMVDAPMLQMRQRFN--SGDRTR 1603
GF ++ D F+ D D + A EE FP C+V+ S LT+++ G+++GDV + A+F W ++ DTF + QF+ AY IDVE G L+GK +D LPY R+ P T T +NHMV+ TEF + +G + E + Y+Q TT+G + Y ++ E A ++ + I KFE++S+ EVDP++ W+ IGAIGG WQ+VV FGLF V+S KQ P+ KMR+F++ KPA+ + ST + + K + P A S A+ NR G + GD LPPGW+ R+D G+TY+++T+ KTTQWE P Q R S G +++D PM R+ N S D +R
Sbjct: 129 GFTDDLDTFLDDNADATSAIEEEFPHCRVIPLSRLTMDEDGINSGDVDSFDASFYFLWYESA-------DTFDPEIYPINAQFLSAYLIDVEAGVEPLEGKSVDVKLPYARIEPTTATELTTTVNHMVMGLTEFAGIDDNGNREERQRTYSQSTTTGTQNWYWTEETIEL-EFALIMVDVSIPKFEYTSIVEVDPVDGWSIIGAIGGIWQFVVTGFGLFFVYSVKQSPDRKMRNFRKSVTKPASIVNKRLSTLGSRSSISNQDIELDASEEDLPADWVKKQRANGSIYYFHPLTGKKQSTPPDALGSARGGPQASGTALNRIFRPAHASSGAGVSREHGQLSGDPLPPGWISRTDDSGKTYFQDTVSKTTQWERPTQHPRSSSVSSGRPEVIDMPMAHTRRGSNASSADNSR 532
BLAST of mRNA_S-dermatodea_contig1277.1691.1 vs. uniprot
Match: A0A6H5JSI3_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI3_9PHAE) HSP 1 Score: 209 bits (532), Expect = 4.840e-54 Identity = 134/331 (40.48%), Postives = 184/331 (55.59%), Query Frame = 2
Query: 545 TLVLSRM*GFLEEPDAFMADDESLAFEEAFPRCKVLRSSMLTVNQTGVDNGDVQALSATF------------LATWLDNPEG------EANEDDTFLFTQFVEAYFIDVERGPNALDGKPIDAFLPYERLTPVGNTTNPTLLNHMVLTFTEFTRL-TKSGTKRETDKIYTQRTTSGRAHLYLEDDFPSTDEVAFLLFQMVINKFEFSSVDEVDPLNPWATIGAIGGAWQYVVLAFGLFCVFSEKQLPEFKMRDFKQMTWKPANPFAR-AASTTSNAPTKPTIGPRAAESQGSASTATWGMSNRGDVGGDILPPGWVMRSDGEGRTYYKNTL 1477
TLV + GF+E AD+ SLA +EA+P C+VL +S LTVNQTG+DNGD+ ATF W ++P E + TQFV +F+DV+ G A+ + DA LPY RL+P N + ++HMV+ T+F + T SG K++ + +TQ +TS + Y DF +E+A LLF M I KFE++S+++VDP++ WA IGAIGG WQ+VV+AFGLF VFSEKQLP+ K+R+FK+ KPA+ R +S +S PT P + D + LP GWV R G TYY N L
Sbjct: 145 TLVSTTHQGFMEAE--LEADEASLAIQEAYPHCRVLPTSKLTVNQTGIDNGDINHFYATFGVGGDGRDNASCALLWDEDPHDDFDPAVELASRGVSINTQFVNLFFVDVDLGVEAIGEELTDAKLPYNRLSPTTNGSMVGTMSHMVIEMTQFQPISTSSGEKQDPQRTFTQSSTSATVNWY-NPDF--NEELAALLFNMFIPKFEYTSIEQVDPVDGWAIIGAIGGVWQFVVIAFGLFFVFSEKQLPDKKIRNFKKSVAKPASMVKRHLSSASSRDPTIPDV--------------------EIDTSNEDLPIGWVKRQRKNGTTYYYNPL 450
BLAST of mRNA_S-dermatodea_contig1277.1691.1 vs. uniprot
Match: D8LQB8_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQB8_ECTSI) HSP 1 Score: 202 bits (513), Expect = 3.270e-52 Identity = 128/320 (40.00%), Postives = 179/320 (55.94%), Query Frame = 2
Query: 569 GFLEEPDAFMADDESLAFEEAFPRCKVLRSSMLTVNQTGVDNGDVQALSATFLATWLDNPEG------EANEDDTFLFTQFVEAYFIDVERGPNALDGKPIDAFLPYERLTPVGNTTNPTLLNHM---------VLTFTEFTRL-TKSGTKRETDKIYTQRTTSGRAHLYLEDDFPSTDEVAFLLFQMVINKFEFSSVDEVDPLNPWATIGAIGGAWQYVVLAFGLFCVFSEKQLPEFKMRDFKQMTWKPANPFAR-AASTTSNAPTKPTIGPRAAESQGSASTATWGMSNRGDVGGDILPPGWVMRSDGEGRTYYKNTL 1477
GF+E AD+ SLA +EA+P C+VL +S LTVNQTG++NGD+ A F W ++P E + TQFV +F+DV+ G A+ + DA LPY+RL+P + + ++HM V+ T+F + T SG K++ + +TQ +TS + Y DF +E+A LLF M I KFE++S+++VDP++ WA IGAIGG WQ+VV+AFGLF VFSEKQLP+ K+R+FK+ KPA+ R +S S PT P + D + LP GWV R G TYY N L
Sbjct: 125 GFMEAE--LEADEASLAIQEAYPHCRVLPTSKLTVNQTGIENGDINHFYAIFGLLWDEDPHDDFDPAVELASTGVSINTQFVNLFFVDVDLGVEAIGEELTDAKLPYDRLSPTTSGSMVGTMSHMKSCWATTGQVIEMTQFQPISTSSGQKQDPQRTFTQSSTSATVNWY-NPDFD--EELAALLFNMFIPKFEYTSIEQVDPVDGWAIIGAIGGVWQFVVIAFGLFFVFSEKQLPDKKIRNFKKSVAKPASMVNRHLSSANSRDPTTPDV--------------------EIDASNEDLPIGWVKRQRKNGTTYYYNLL 419
BLAST of mRNA_S-dermatodea_contig1277.1691.1 vs. uniprot
Match: D7FP34_ECTSI (Similar to neural cell expressed, developmentally down-regulated 4-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP34_ECTSI) HSP 1 Score: 199 bits (507), Expect = 2.530e-50 Identity = 137/393 (34.86%), Postives = 196/393 (49.87%), Query Frame = 2
Query: 569 GFLEEPDAFMADDESLA--FEEAFPRCKVLRSSMLTVNQTGVDNGDVQALSATFLATWLDNPEGEANEDDTF-------LFTQFVEAYFIDVERGPNALDGKPIDAFLPYERLTPVGNTTNPTLLNHMVLTFTEFTRLTKSGTKRETDKIYTQRTTSGRAHLYLEDDFPSTDEVAFLLFQMVINKFEFSSVDEVDPLNPWATIGAIGGAWQYVVLAFGLFCVFSEKQLPEFKMRDFKQMTWKPANPFAR-------AASTTSNAPT--------------------------------KPTIGPRAAESQGSA----STATWGMSNRGD----VGGDILPPGWVMRSDGEGRTYYKNTLLKTTQWEPPYQRDQSCRGGT--VQMVDAPMLQMR 1573
GFL+ F D ++ FEE +P CK + SM+TV++TGV NG V + S F W +E DTF + QF++ Y I + + +DA +PY RL +T +NHMVL TEFT + ++G K+E + ++Q T +G H + + + E F + ++ I KFEF+S++EVDP++ W+ IGAIGG WQ+VV FGLF VFSEKQ P+ KMR+F++ KPA FA +S +SN K T P ++ G + S + G +G+ LP GW+ +DG+G+ YY +T+ KTTQWE P QR+ S G Q VDAPM Q R
Sbjct: 122 GFLDYDQNFTDDFAYVSEPFEEVYPNCKFVPLSMMTVDETGVKNGSVTSFSTAFYVLW--------DEKDTFYDHSYYLINRQFLDMYLIPPDSSIESFTSASVDAKVPYSRLNLTTDTAFEATINHMVLGVTEFTGINENGNKKEKQRSFSQATITGVEHWWWGAEDYDSVEFGFFMVELSIGKFEFTSIEEVDPVDGWSIIGAIGGIWQFVVTGFGLFFVFSEKQSPDRKMRNFRKSIGKPAE-FANKRLSILNTSSRSSNQDVEIDASEEDLPVEWVKKQRPNGSIYYFNVMTGAKQTASPNHLDNAGGSAPPPSNSALGRIFQGNRSARPNSGPLPAGWIEGTDGDGKKYYLDTINKTTQWERPLQREHSSGGPDRRPQAVDAPMSQSR 505
BLAST of mRNA_S-dermatodea_contig1277.1691.1 vs. uniprot
Match: A0A6H5JZ12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ12_9PHAE) HSP 1 Score: 149 bits (377), Expect = 1.050e-33 Identity = 108/338 (31.95%), Postives = 163/338 (48.22%), Query Frame = 2
Query: 569 GFLEEPDAFMAD--DESLAFEEAFPRCKVLRSSMLTVNQTGVDNGDVQALSATFLATWLDNP-EGEANED----------DTF------LFTQFVEAYFIDVERGPNALDGKPIDAFLPYERLTPVGNTTNPTLLNHMVLTFTEFTRLTKSGTKRETDKIYTQRTTSGRAHLYLEDDFPSTDEVAFLLFQMVINKFEFSSVD------EVDPLNPWATIGAI-GGAWQYVVLAFGLFCVFSEKQLPEFKMRDFKQMTWKPANPFARAASTTSNAPTKPTIGPRAAESQGSASTATWGMSNRGDVGGDILPPGWVMRSDGEGRTYYKNTLLKTTQWEPP 1504
GF ++ D F+ D D + A EE FP C+V S LT+++ G+++GDV +L A+F + EA D DTF + QF+ Y IDVE G L+GK +D LPY R+ P+ +T + NHMV+ TEF + +G + E + Y+Q TT+G + Y D+ E A ++ + I KFE++ + + ++PW + A ++VV FGLF VFS KQ P+ KMR+F++ KPA+ + ST +G R ++T D + LP WV + G YY + L Q PP
Sbjct: 134 GFTDDLDTFLDDNADATSAIEEEFPHCRVFPLSRLTIDEDGINSGDVDSLYASFYVREKKRAGQSEAASDGEQFLWYESADTFDRATYNINAQFLSTYLIDVEAGVEPLEGKSVDVKLPYARIEPITDTEFTAIANHMVVGLTEFAGIDDNGNREERQRTYSQSTTTGTQNWYWTDETYDF-EFALMIVDVSIPKFEYTFIAVSMNQRSKEEVSPWFALPPFKDSAAEFVVTGFGLFFVFSVKQSPDRKMRNFRKSVTKPASIVNKRLST---------LGSR---------SSTSNQDIELDSSEEDLPADWVKKQRANGSIYYFHPLTGKKQSTPP 452
BLAST of mRNA_S-dermatodea_contig1277.1691.1 vs. uniprot
Match: A0A6H5JBE8_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE8_9PHAE) HSP 1 Score: 125 bits (314), Expect = 9.820e-26 Identity = 100/353 (28.33%), Postives = 155/353 (43.91%), Query Frame = 2
Query: 569 GFLEEPDAFMADDESLA--FEEAFPRCKVLRSSMLTVNQTGVDNGDVQALSATF-----------LATWLDNPEGEA------------NEDDTF-------LFTQFVEAYFIDVERGPNALDGKPIDAFLPYERLTPVGNTTNPTLLNHMVLTFTEFTRLTKSGTKRETDKIYTQRTTSGRAHLYLEDDFPSTDEVAFLLFQMVINKFEFSSVDEVDPLNPWATIGAIGGAWQYVVLAFGLFCVFSEKQLPEFKMRDFKQMTWKPANPFARAASTTSNAPTKPTIGPRAAESQGSASTATWGMSNRG-----DVGGDILPPGWVMRSDGEGRTYYKNTLLKTTQWEPPYQRD 1516
GFL+ F AD ++ FEE +P CK + SM+TV++TGV NG V + S F + W+D A +E T+ + QF++ Y I + +DA +PY RL +T +NHMVL+ TEFT + K+G K E ++ ++Q +G H + + ++ E F + ++ I KFEF+S++ ++VV FGLF VFSE+Q P+ + R+F++ KPA FA ++ N ++ SNR D G+ LP WV + G YY N + Q P + D
Sbjct: 159 GFLDYDQNFTADYAYVSEPFEEVYPNCKFVPLSMMTVDETGVKNGSVTSFSTAFYVRIPVQSAGLVVAWVDRRYNRAWVWCIRSNQVLWDEKGTYYDHSYYLINRQFLDLYLIPPGSSIESFTSASVDAKVPYSRLNLTTDTAFEATINHMVLSLTEFTGINKNGNKEEKERSFSQTAITGVEHWWWGYEDYNSVEFGFFMVELSIGKFEFTSIEV-----------------EFVVTGFGLFFVFSERQSPDRRFRNFRKSIRKPAE-FAGNRLSSLN--------------------ISFRSSNRNQDVEIDASGEDLPVEWVKKQRPNGSIYYFNVMTGAKQTASPNRLD 473 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1277.1691.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig1277.1691.1 >prot_S-dermatodea_contig1277.1691.1 ID=prot_S-dermatodea_contig1277.1691.1|Name=mRNA_S-dermatodea_contig1277.1691.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=412bp MADDESLAFEEAFPRCKVLRSSMLTVNQTGVDNGDVQALSATFLATWLDNback to top mRNA from alignment at S-dermatodea_contig1277:597..10687+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig1277.1691.1 ID=mRNA_S-dermatodea_contig1277.1691.1|Name=mRNA_S-dermatodea_contig1277.1691.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=10091bp|location=Sequence derived from alignment at S-dermatodea_contig1277:597..10687+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig1277:597..10687+ >mRNA_S-dermatodea_contig1277.1691.1 ID=mRNA_S-dermatodea_contig1277.1691.1|Name=mRNA_S-dermatodea_contig1277.1691.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2472bp|location=Sequence derived from alignment at S-dermatodea_contig1277:597..10687+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |