mRNA_S-dermatodea_contig876.16909.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig876.16909.1
Unique NamemRNA_S-dermatodea_contig876.16909.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig876.16909.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig876contigS-dermatodea_contig876:15570..19566 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1482
Cds size1371
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925364.8841367-UTR-S-dermatodea_contig876:15569..156311622925364.8841367-UTR-S-dermatodea_contig876:15569..15631Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig876 15570..15631 +
1694079883.6865876-UTR-S-dermatodea_contig876:15569..156311694079883.6865876-UTR-S-dermatodea_contig876:15569..15631Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig876 15570..15631 +
1622925364.9586694-UTR-S-dermatodea_contig876:19517..195661622925364.9586694-UTR-S-dermatodea_contig876:19517..19566Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig876 19518..19566 +
1694079883.7568505-UTR-S-dermatodea_contig876:19517..195661694079883.7568505-UTR-S-dermatodea_contig876:19517..19566Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig876 19518..19566 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925364.8963418-CDS-S-dermatodea_contig876:15631..156531622925364.8963418-CDS-S-dermatodea_contig876:15631..15653Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig876 15632..15653 +
1694079883.6978796-CDS-S-dermatodea_contig876:15631..156531694079883.6978796-CDS-S-dermatodea_contig876:15631..15653Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig876 15632..15653 +
1622925364.9069364-CDS-S-dermatodea_contig876:16499..167501622925364.9069364-CDS-S-dermatodea_contig876:16499..16750Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig876 16500..16750 +
1694079883.711487-CDS-S-dermatodea_contig876:16499..167501694079883.711487-CDS-S-dermatodea_contig876:16499..16750Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig876 16500..16750 +
1622925364.9219172-CDS-S-dermatodea_contig876:17032..172141622925364.9219172-CDS-S-dermatodea_contig876:17032..17214Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig876 17033..17214 +
1694079883.7254925-CDS-S-dermatodea_contig876:17032..172141694079883.7254925-CDS-S-dermatodea_contig876:17032..17214Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig876 17033..17214 +
1622925364.9341996-CDS-S-dermatodea_contig876:17797..178751622925364.9341996-CDS-S-dermatodea_contig876:17797..17875Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig876 17798..17875 +
1694079883.733692-CDS-S-dermatodea_contig876:17797..178751694079883.733692-CDS-S-dermatodea_contig876:17797..17875Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig876 17798..17875 +
1622925364.9460294-CDS-S-dermatodea_contig876:18679..195171622925364.9460294-CDS-S-dermatodea_contig876:18679..19517Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig876 18680..19517 +
1694079883.741702-CDS-S-dermatodea_contig876:18679..195171694079883.741702-CDS-S-dermatodea_contig876:18679..19517Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig876 18680..19517 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig876.16909.1prot_S-dermatodea_contig876.16909.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig876 15632..19517 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig876.16909.1

>prot_S-dermatodea_contig876.16909.1 ID=prot_S-dermatodea_contig876.16909.1|Name=mRNA_S-dermatodea_contig876.16909.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=457bp
MQALRYFAPGRYKPGGGDPNVLTRSASTAALSGGAKRTALSQEVRTGDLA
ASVASAWLVKTTTGATTALVQKGLEAQESQQQSAVIDAFKKIFDKQLGPF
VKEAIKGATDTATKPRPAGKPRGPTSGKQSNLKEAPTKAKCHDLNKMMEL
HTKTVTGKIHELFKKDGLKASSSGGKTRSTPLKKTNSPADRKAKSKVSFE
KDSSSAASGEGEDASGEEEQESRSPPERNKGKTSSTSREGAKREQEREKT
HSRSRSTANAGKRSSNTQSPTSSSEGEEASDDDEHESCQPPQRKKERSTS
AKREHERRKSRASRSDSNAQEYESTSLGRIAAESQSPECHPSGVTAEWAS
WQGPGYPHVQLNHQPPPSEATRQHYTYLNGSAGPPGWGIGGHPPQAAPGW
AGYDQYNHTQTGTWGTLHPTSQPQPSRTVSSPPSEGVVRRGRPSASPEWD
TDAYRR*
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mRNA from alignment at S-dermatodea_contig876:15570..19566+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig876.16909.1 ID=mRNA_S-dermatodea_contig876.16909.1|Name=mRNA_S-dermatodea_contig876.16909.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3997bp|location=Sequence derived from alignment at S-dermatodea_contig876:15570..19566+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCTCTCACTAACGTGCTTCACCCTCCCTTTATTAGCACGCCTAAGTGAGA
GGATCAGGTTGGATGCAAGCGCTGCGGTATTTCGGTGAGTTAGTGGGAAC
TCACTACAAAAGACGGAGTGTGTCAGATAACTAAATTCATACCTGAATTG
ATGGCTTTGTTTTAGATGCATATCTACTCGTCATCCGACCGCTGTTTACG
AGGAAGACGTGGATATGGGTGAGAGTTATGACGTGGCTCACGCATCTCGA
GGCCGTCCTAACAACAGGTCGTCGTTTGTAGCTGTGGCGAGAGCGTGTCT
TTCTTTTGCGAAGCTTGGGTGCACCCGCGTAACAAACGACTTAGGTCGGT
TTGTTTGCTGAATTATTTATTTTCCCACGTGTAGCCGGCCGGCTTTGTCC
GCTCCGACTTGTGTTAAGACGCCCAAATATGCTAGGAGAAAAACCAAAAA
TCATAACTCTTGTATATCCGATTCGCCGTACCGTCCCTGGTACTTATCAC
ACTGATGGCCAAGCTAAACAAGGATCACGAAGTAGAAACATGCGCGCTCA
TCTGTCCCGTCTATTTTCATTGTTTTGTTGATAAGGCTCCCGTATCAGCC
CACCGGCATCATCTACACGCGACTCCTCCAACGTAATAACCCTAGACAAT
ATACCGTGAAAAGGATGCAGTCTTGATTCGTTTTTTGTTAGAATCTCGAA
AGAACGCGGTGCGTTACTTGTATGGTAGACCGCATGGGAATACCCGTCGT
TGAGACCTACTACAGATGCCGAAATTGTTATCCTGACTTCATGGATCCTA
AGAATATGAGGGCCTTTGCGCATGTGACCATAAGTCGGGTTGGATGAAGC
CGGTCGGCTGTACGCGTGCAAAGCAATCAATCAACAAACATAAATTGGTA
CCGCTACGAAAAACTCTCTTGCAACCGCAGCACCAGGCAGGTACAAGCCG
GGGGGGGGGGACCCAAACGTTCTCACACGGTCGGCCAGCACGGCCGCACT
TTCCGGCGGCGCCAAGAGGACGGCCCTTTCGCAGGAGGTGCGCACAGGCG
ATCTAGCGGCGAGTGTCGCGTCCGCTTGGCTCGTCAAGACCACCACAGGG
GCCACCACGGCGCTGGTGCAAAAGGGATTAGAAGCGCAAGAGTCGCAACA
GCAGAGTGCTGTTATCGACGCGTTCAAGAAGGCAAGTACCCCTTGCTTGT
TGTTATGTACCTGGTGGTGTCCGGGTAGATCCGCGGCTTCGTGGCGGGGC
AGAGCACGTGGCAAACGTAATATCATTGCGGATCACAACAAGGTTTTGGT
CACACGCGAAGCATTGAATAAAAAGAGTGGCCCAAACGGCCAATACGTCG
CGAAAGCAGACGCCTGAACCCTCTCTCTAATCTTGTTCTCTGTCTCCGCC
TTAACCCCCTCTCGTTTCTTGTTCTCTGTCTGCGTTTTTATGCACCGGAT
GTGTTTTGTGTAGATCTTTGATAAACAACTCGGCCCATTCGTTAAAGAAG
CGATAAAGGGGGCGACCGACACTGCAACCAAACCTCGCCCAGCGGGCAAA
CCGCGAGGCCCAACAAGCGGGAAGCAGTCCAACCTCAAGGAAGCGCCCAC
CAAGGCCAAATGCCACGACCTCAACAAAATGATGGAGCTTCACACGTAAG
TCCAGATGCCCTCGGTTCATGCCCGGTCGTCAAAACTCGTCGCGCGCCTC
GCTGCTCGAGATGCGTCTCGCCCTAGTTTATTTTTTTAGACTAACCTCGC
GACAAATCTAGGCAACTGGAACGTGGGCTACGGATATTGCGTATTCTTCT
TGTTGTTGCTTTGCTTCTTTCTTTGTTTTCTTTTTCCCCGGGCTTCCACA
TTCATCTGTAGGGCTCGTCGTTTTTTCCGAGTATCGGGTGCCAGACTCGG
TAACAACATCACGGGTGCGACGAGCCGTTCGTGTAGTAGATGGGGGGGCT
TTTTGTATTTTGAGCAGTCCCAAATGTCGAGATACGTCCCCTCTGTTTCC
GAGAGTCAGTCTGTGTCAATTCTCATTTGTTTTCTTCAATATAGCTCTTT
ACGTTTTTATTCAATCTCTCGACTTCTCATTTTAACACGAGCGGGGACGG
CAAACTGCAGTGGGCCGTTCGTTTGTAAGTGTGATCATCGGATAAAATCA
ATCAACCAAACAGTCAATCGCACTTGATGTCGTACGGTGTTTGACAGAGC
CACTAACACACTGCTTATGCGTCCTCAGGAAAACGGTCACAGGGAAGATT
CATGAGCTTTTCAAGAAAGATGGCCTCAAAGCTTCTTCGAGTGGGGGCAA
GACCAGGTGGGACGCGTGTACTGTTCGTTTGGTTTTACTCGTTGCTATGT
GTTGTACGTTATACGCGACTGGGACGGCGCTCAATCAGCGTGACCATATT
GCCGTCACCGAGTATCCAACGCGGTCACTCCGAGTCATTGAAGTTTTGTC
TCCCGCTTCGAATGTGCGTCGTGCAAAGGGCGTCTCGGTGGCGGCAACGT
TTCGCCCCTTGTTTTTTTCTCTCGTCTTTCTGTGTGCCTTGACTGCATTT
TACAACTAGCCACAAATGTCGCTCAAATTCGGTGTGCGTCCCTGTGTTTT
CAAGTGATCCCCCCCTAATGAAATTTTGAAGACAGAATCCCATTACAACA
TGTTGTGTGCACGGCGCAAAAAGGTCTGCAGCGATAACGTCAGGCACCGT
GCAAATTTTTTAATACTGGACTGGATTTTGGCCACGTGGCTTATAAATCC
GCACGCGCTGAGATATCTATGCAAGGTCATTCCATTTAATCATTTTGCGA
ACCTACCGCCGAGGAATAGCTCAGCGAAAACAAACTAAAAAAACTGAGAA
GTTTGCTTGCGCGTGTTGCGAATCACGTCTCTCTCGTACTTTCTAATTTT
AGACCAACATTACGAACATGTACCTGTGCATTGTGATTAAACAACTTCTT
CAGCTTCTTGCACACACAGCTTGTACAAACGATATTATTTGTTCGACTTT
CAACATGGTGCGCCATTACAGTTTACAAATATTCCTCGCGCAACAAGTGC
AACCCCTTCACCTCCTGCTCAACTGTTAATCAACTCCAATGCCCCACCGA
CAACGCACAGGTCGACGCCTCTAAAGAAGACAAATAGTCCTGCGGACCGT
AAGGCGAAGTCAAAGGTTTCTTTTGAGAAAGACTCCAGCTCCGCCGCGTC
TGGCGAGGGAGAAGACGCCTCGGGCGAGGAAGAACAAGAGTCCAGGTCAC
CCCCCGAAAGGAACAAAGGGAAGACATCATCTACCTCGAGAGAGGGTGCC
AAGAGGGAGCAAGAGCGCGAGAAAACACATTCTCGTTCAAGGTCTACGGC
GAATGCCGGCAAACGAAGCTCGAACACGCAATCCCCGACAAGTTCTAGCG
AGGGAGAAGAAGCGTCGGATGACGACGAACACGAGTCCTGCCAACCTCCC
CAAAGGAAGAAAGAGAGGAGCACATCTGCCAAGAGGGAGCACGAGCGCAG
GAAATCCCGTGCAAGTCGTAGCGACTCCAACGCTCAGGAGTACGAGTCAA
CCAGTCTCGGGCGTATTGCTGCGGAAAGCCAGTCGCCGGAATGCCACCCT
TCCGGAGTAACAGCCGAGTGGGCCTCGTGGCAGGGTCCTGGGTACCCTCA
CGTACAGTTGAACCACCAACCACCGCCCTCCGAAGCAACCCGGCAGCACT
ACACCTACCTGAACGGGTCGGCCGGACCACCCGGATGGGGGATTGGTGGC
CATCCACCTCAGGCAGCCCCTGGATGGGCTGGTTATGACCAATACAATCA
CACACAAACCGGTACATGGGGGACTTTACACCCAACCTCGCAGCCACAGC
CTAGTAGGACGGTGAGTAGTCCCCCTAGCGAGGGAGTCGTTCGACGGGGA
CGTCCAAGCGCGAGTCCAGAGTGGGATACAGATGCTTACCGACGGTAGAG
GCTTCAATTTTTGGACCTTGTAGGTTAGGTTGAGGGTTTGATAGCGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig876:15570..19566+

>mRNA_S-dermatodea_contig876.16909.1 ID=mRNA_S-dermatodea_contig876.16909.1|Name=mRNA_S-dermatodea_contig876.16909.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2742bp|location=Sequence derived from alignment at S-dermatodea_contig876:15570..19566+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCAAGCGCTGCGGTATTTCGATGCAAGCGCTGCGGTATTTCGCACCAG
GCAGGTACAAGCCGGGGGGGGGGGACCCAAACGTTCTCACACGGTCGGCC
AGCACGGCCGCACTTTCCGGCGGCGCCAAGAGGACGGCCCTTTCGCAGGA
GGTGCGCACAGGCGATCTAGCGGCGAGTGTCGCGTCCGCTTGGCTCGTCA
AGACCACCACAGGGGCCACCACGGCGCTGGTGCAAAAGGGATTAGAAGCG
CAAGAGTCGCAACAGCAGAGTGCTGTTATCGACGCGTTCAAGAAGCACCA
GGCAGGTACAAGCCGGGGGGGGGGGACCCAAACGTTCTCACACGGTCGGC
CAGCACGGCCGCACTTTCCGGCGGCGCCAAGAGGACGGCCCTTTCGCAGG
AGGTGCGCACAGGCGATCTAGCGGCGAGTGTCGCGTCCGCTTGGCTCGTC
AAGACCACCACAGGGGCCACCACGGCGCTGGTGCAAAAGGGATTAGAAGC
GCAAGAGTCGCAACAGCAGAGTGCTGTTATCGACGCGTTCAAGAAGATCT
TTGATAAACAACTCGGCCCATTCGTTAAAGAAGCGATAAAGGGGGCGACC
GACACTGCAACCAAACCTCGCCCAGCGGGCAAACCGCGAGGCCCAACAAG
CGGGAAGCAGTCCAACCTCAAGGAAGCGCCCACCAAGGCCAAATGCCACG
ACCTCAACAAAATGATGGAGCTTCACACATCTTTGATAAACAACTCGGCC
CATTCGTTAAAGAAGCGATAAAGGGGGCGACCGACACTGCAACCAAACCT
CGCCCAGCGGGCAAACCGCGAGGCCCAACAAGCGGGAAGCAGTCCAACCT
CAAGGAAGCGCCCACCAAGGCCAAATGCCACGACCTCAACAAAATGATGG
AGCTTCACACGAAAACGGTCACAGGGAAGATTCATGAGCTTTTCAAGAAA
GATGGCCTCAAAGCTTCTTCGAGTGGGGGCAAGACCAGGAAAACGGTCAC
AGGGAAGATTCATGAGCTTTTCAAGAAAGATGGCCTCAAAGCTTCTTCGA
GTGGGGGCAAGACCAGGTCGACGCCTCTAAAGAAGACAAATAGTCCTGCG
GACCGTAAGGCGAAGTCAAAGGTTTCTTTTGAGAAAGACTCCAGCTCCGC
CGCGTCTGGCGAGGGAGAAGACGCCTCGGGCGAGGAAGAACAAGAGTCCA
GGTCACCCCCCGAAAGGAACAAAGGGAAGACATCATCTACCTCGAGAGAG
GGTGCCAAGAGGGAGCAAGAGCGCGAGAAAACACATTCTCGTTCAAGGTC
TACGGCGAATGCCGGCAAACGAAGCTCGAACACGCAATCCCCGACAAGTT
CTAGCGAGGGAGAAGAAGCGTCGGATGACGACGAACACGAGTCCTGCCAA
CCTCCCCAAAGGAAGAAAGAGAGGAGCACATCTGCCAAGAGGGAGCACGA
GCGCAGGAAATCCCGTGCAAGTCGTAGCGACTCCAACGCTCAGGAGTACG
AGTCAACCAGTCTCGGGCGTATTGCTGCGGAAAGCCAGTCGCCGGAATGC
CACCCTTCCGGAGTAACAGCCGAGTGGGCCTCGTGGCAGGGTCCTGGGTA
CCCTCACGTACAGTTGAACCACCAACCACCGCCCTCCGAAGCAACCCGGC
AGCACTACACCTACCTGAACGGGTCGGCCGGACCACCCGGATGGGGGATT
GGTGGCCATCCACCTCAGGCAGCCCCTGGATGGGCTGGTTATGACCAATA
CAATCACACACAAACCGGTACATGGGGGACTTTACACCCAACCTCGCAGC
CACAGCCTAGTAGGACGGTGAGTAGTCCCCCTAGCGAGGGAGTCGTTCGA
CGGGGACGTCCAAGCGCGAGTCCAGAGTGGGATACAGATGCTTACCGACG
GTAGGTCGACGCCTCTAAAGAAGACAAATAGTCCTGCGGACCGTAAGGCG
AAGTCAAAGGTTTCTTTTGAGAAAGACTCCAGCTCCGCCGCGTCTGGCGA
GGGAGAAGACGCCTCGGGCGAGGAAGAACAAGAGTCCAGGTCACCCCCCG
AAAGGAACAAAGGGAAGACATCATCTACCTCGAGAGAGGGTGCCAAGAGG
GAGCAAGAGCGCGAGAAAACACATTCTCGTTCAAGGTCTACGGCGAATGC
CGGCAAACGAAGCTCGAACACGCAATCCCCGACAAGTTCTAGCGAGGGAG
AAGAAGCGTCGGATGACGACGAACACGAGTCCTGCCAACCTCCCCAAAGG
AAGAAAGAGAGGAGCACATCTGCCAAGAGGGAGCACGAGCGCAGGAAATC
CCGTGCAAGTCGTAGCGACTCCAACGCTCAGGAGTACGAGTCAACCAGTC
TCGGGCGTATTGCTGCGGAAAGCCAGTCGCCGGAATGCCACCCTTCCGGA
GTAACAGCCGAGTGGGCCTCGTGGCAGGGTCCTGGGTACCCTCACGTACA
GTTGAACCACCAACCACCGCCCTCCGAAGCAACCCGGCAGCACTACACCT
ACCTGAACGGGTCGGCCGGACCACCCGGATGGGGGATTGGTGGCCATCCA
CCTCAGGCAGCCCCTGGATGGGCTGGTTATGACCAATACAATCACACACA
AACCGGTACATGGGGGACTTTACACCCAACCTCGCAGCCACAGCCTAGTA
GGACGGTGAGTAGTCCCCCTAGCGAGGGAGTCGTTCGACGGGGACGTCCA
AGCGCGAGTCCAGAGTGGGATACAGATGCTTACCGACGGTAG
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