mRNA_S-dermatodea_contig8756.16903.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8756.16903.1
Unique NamemRNA_S-dermatodea_contig8756.16903.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig8756.16903.1 vs. uniprot
Match: D8LJ74_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ74_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 2.600e-40
Identity = 59/73 (80.82%), Postives = 68/73 (93.15%), Query Frame = 1
Query:    1 SVLSFNVLLPNGNDGWWIYKSYQPHVPEEHRAWPYRQALMKDCLLRKDADVVCVQEASAETFESDFAFMKGAG 219
            +V+SFNVLLPNGNDGWW+YKSYQPHVPEEHR WP+R+ALM++ LL KDAD+VCVQEASAETFE+DF FMK AG
Sbjct:   29 TVVSFNVLLPNGNDGWWMYKSYQPHVPEEHRVWPFRKALMREYLLSKDADIVCVQEASAETFETDFDFMKDAG 101          
BLAST of mRNA_S-dermatodea_contig8756.16903.1 vs. uniprot
Match: A0A6H5JCW2_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCW2_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 4.870e-36
Identity = 59/73 (80.82%), Postives = 68/73 (93.15%), Query Frame = 1
Query:    1 SVLSFNVLLPNGNDGWWIYKSYQPHVPEEHRAWPYRQALMKDCLLRKDADVVCVQEASAETFESDFAFMKGAG 219
            +V+SFNVLLPNGNDGWW+YKSYQPHVPEEHR WP+R+ALM++ LL KDAD+VCVQEASAETFE+DF FMK AG
Sbjct:   29 TVVSFNVLLPNGNDGWWMYKSYQPHVPEEHRVWPFRKALMREYLLSKDADIVCVQEASAETFETDFDFMKDAG 101          
BLAST of mRNA_S-dermatodea_contig8756.16903.1 vs. uniprot
Match: A0A7S3UUW7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UUW7_HETAK)

HSP 1 Score: 106 bits (264), Expect = 2.770e-28
Identity = 42/73 (57.53%), Postives = 60/73 (82.19%), Query Frame = 1
Query:    1 SVLSFNVLLPNGNDGWWIYKSYQPHVPEEHRAWPYRQALMKDCLLRKDADVVCVQEASAETFESDFAFMKGAG 219
            SV+S+NVLLPN +DGWWIYK+YQ HVP +HRAW +R +L++  ++  +AD++C+QEAS ++FE DF FM+ AG
Sbjct:    3 SVMSYNVLLPNSHDGWWIYKNYQKHVPRQHRAWGHRSSLLEKQIVGSNADIICIQEASGDSFEEDFDFMEKAG 75          
BLAST of mRNA_S-dermatodea_contig8756.16903.1 vs. uniprot
Match: A0A7S2V1N9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1N9_9STRA)

HSP 1 Score: 111 bits (277), Expect = 6.890e-27
Identity = 49/73 (67.12%), Postives = 59/73 (80.82%), Query Frame = 1
Query:    1 SVLSFNVLLPNGNDGWWIYKSYQPHVPEEHRAWPYRQALMKDCLLRKDADVVCVQEASAETFESDFAFMKGAG 219
            SVLS+NVLLPN  DGWWIYK Y+ HVPEEHR W YRQ L+K  LL  +ADV+C+QE S ++FESDFAF++ AG
Sbjct:  119 SVLSYNVLLPNSADGWWIYKYYKHHVPEEHRTWEYRQQLLKVQLLGSEADVICLQETSPKSFESDFAFLREAG 191          
BLAST of mRNA_S-dermatodea_contig8756.16903.1 vs. uniprot
Match: A0A7S1EDE4_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1EDE4_HEMAN)

HSP 1 Score: 103 bits (256), Expect = 4.240e-24
Identity = 45/73 (61.64%), Postives = 54/73 (73.97%), Query Frame = 1
Query:    1 SVLSFNVLLPNGNDGWWIYKSYQPHVPEEHRAWPYRQALMKDCLLRKDADVVCVQEASAETFESDFAFMKGAG 219
            S+ SFNVLLPN  DGWWIYK + P V  EHR WP+RQ LM + +L   AD+V +QEA+AE+FE DFAFM  AG
Sbjct:   90 SLASFNVLLPNSKDGWWIYKYFGPSVSAEHREWPHRQKLMSEIMLSAKADIVAIQEAAAESFEEDFAFMSDAG 162          
BLAST of mRNA_S-dermatodea_contig8756.16903.1 vs. uniprot
Match: L1J4F2_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J4F2_GUITC)

HSP 1 Score: 93.6 bits (231), Expect = 1.630e-23
Identity = 41/74 (55.41%), Postives = 51/74 (68.92%), Query Frame = 1
Query:    1 SVLSFNVLLPNGNDGWWIYKSYQPHVPEEHRAWPYRQALMKDCLLRKD-ADVVCVQEASAETFESDFAFMKGAG 219
            S+ ++NVL+PN  DGWW+YK YQ HVP E R W  RQ  MKD LL    +D+VC+QEA   +F+ DFAFM  AG
Sbjct:    7 SISTYNVLMPNSEDGWWVYKYYQSHVPRELREWEARQGRMKDLLLHHGGSDIVCIQEACGSSFDKDFAFMTEAG 80          
BLAST of mRNA_S-dermatodea_contig8756.16903.1 vs. uniprot
Match: R1BIY3_EMIHU (EF-hand domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BIY3_EMIHU)

HSP 1 Score: 100 bits (248), Expect = 6.470e-23
Identity = 43/73 (58.90%), Postives = 54/73 (73.97%), Query Frame = 1
Query:    1 SVLSFNVLLPNGNDGWWIYKSYQPHVPEEHRAWPYRQALMKDCLLRKDADVVCVQEASAETFESDFAFMKGAG 219
            S+LS+N+LLPNG D WW  K YQPHVP + R W +RQ L++D LL  DAD+VCVQEA+ +TF SDF F+   G
Sbjct:   45 SLLSWNILLPNGEDNWWCEKMYQPHVPHDCRQWSHRQRLIRDRLLLADADIVCVQEAAGDTFASDFEFLHADG 117          
BLAST of mRNA_S-dermatodea_contig8756.16903.1 vs. uniprot
Match: A0A0G4HGE9_9ALVE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HGE9_9ALVE)

HSP 1 Score: 95.5 bits (236), Expect = 2.810e-21
Identity = 39/73 (53.42%), Postives = 56/73 (76.71%), Query Frame = 1
Query:    1 SVLSFNVLLPNGNDGWWIYKSYQPHVPEEHRAWPYRQALMKDCLLRKDADVVCVQEASAETFESDFAFMKGAG 219
            S++++NVLLPN +DGWWIYK Y+PHVP   R W +RQ L+K+ +LR+  D+VC+QE + ++F  DFAFM+  G
Sbjct:   32 SLMTWNVLLPNSSDGWWIYKYYEPHVPPICRQWTHRQRLIKERILREAPDIVCLQECAPDSFTQDFAFMEANG 104          
BLAST of mRNA_S-dermatodea_contig8756.16903.1 vs. uniprot
Match: A0A7S3W1N3_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3W1N3_EMIHU)

HSP 1 Score: 89.4 bits (220), Expect = 4.840e-21
Identity = 38/73 (52.05%), Postives = 51/73 (69.86%), Query Frame = 1
Query:    1 SVLSFNVLLPNGNDGWWIYKSYQPHVPEEHRAWPYRQALMKDCLLRKDADVVCVQEASAETFESDFAFMKGAG 219
            S++S NVLLPN +DGWWIYK Y P V      W  R  L+++ LL  DAD++C+QE  A +FESDF+F++ AG
Sbjct:   27 SLISLNVLLPNSHDGWWIYKYYPPSVAAAETTWSARSRLLEELLLIADADIICLQECCAASFESDFSFLQRAG 99          
BLAST of mRNA_S-dermatodea_contig8756.16903.1 vs. uniprot
Match: A0A7S0HZD0_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HZD0_9CRYP)

HSP 1 Score: 85.9 bits (211), Expect = 6.470e-20
Identity = 37/73 (50.68%), Postives = 49/73 (67.12%), Query Frame = 1
Query:    1 SVLSFNVLLPNGNDGWWIYKSYQPHVPEEHRAWPYRQALMKDCLL-RKDADVVCVQEASAETFESDFAFMKGA 216
            S+ ++NVL+PN  DGWW+YK YQ HV  E R W  RQ  MK+ +L R  +D+VC+QEA   +F+ DF FM  A
Sbjct:   56 SISTYNVLMPNSEDGWWVYKYYQSHVAREAREWDRRQERMKNVMLNRGGSDIVCIQEACGSSFDQDFQFMAAA 128          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8756.16903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJ74_ECTSI2.600e-4080.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCW2_9PHAE4.870e-3680.82Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A7S3UUW7_HETAK2.770e-2857.53Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2V1N9_9STRA6.890e-2767.12Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1EDE4_HEMAN4.240e-2461.64Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
L1J4F2_GUITC1.630e-2355.41Uncharacterized protein (Fragment) n=1 Tax=Guillar... [more]
R1BIY3_EMIHU6.470e-2358.90EF-hand domain-containing protein n=1 Tax=Emiliani... [more]
A0A0G4HGE9_9ALVE2.810e-2153.42Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A7S3W1N3_EMIHU4.840e-2152.05Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
A0A7S0HZD0_9CRYP6.470e-2050.68Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8756contigS-dermatodea_contig8756:7087..8156 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.0
Seed ortholog evalue9.9e-19
Seed eggNOG ortholog2903.EOD09813
KEGG koko:K18729
EggNOG free text desc.Endonuclease/Exonuclease/phosphatase family
EggNOG OGsCOG5239@1,KOG2338@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019
Hectar predicted targeting categoryother localisation
Exons2
Model size222
Cds size222
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925364.7275589-CDS-S-dermatodea_contig8756:7086..71461622925364.7275589-CDS-S-dermatodea_contig8756:7086..7146Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8756 7087..7146 +
1694079883.625412-CDS-S-dermatodea_contig8756:7086..71461694079883.625412-CDS-S-dermatodea_contig8756:7086..7146Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8756 7087..7146 +
1622925364.7378535-CDS-S-dermatodea_contig8756:7994..81561622925364.7378535-CDS-S-dermatodea_contig8756:7994..8156Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8756 7995..8156 +
1694079883.6391163-CDS-S-dermatodea_contig8756:7994..81561694079883.6391163-CDS-S-dermatodea_contig8756:7994..8156Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8756 7995..8156 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8756.16903.1prot_S-dermatodea_contig8756.16903.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8756 7087..8156 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8756.16903.1

>prot_S-dermatodea_contig8756.16903.1 ID=prot_S-dermatodea_contig8756.16903.1|Name=mRNA_S-dermatodea_contig8756.16903.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=74bp
SVLSFNVLLPNGNDGWWIYKSYQPHVPEEHRAWPYRQALMKDCLLRKDAD
VVCVQEASAETFESDFAFMKGAG*
back to top

mRNA from alignment at S-dermatodea_contig8756:7087..8156+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8756.16903.1 ID=mRNA_S-dermatodea_contig8756.16903.1|Name=mRNA_S-dermatodea_contig8756.16903.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1070bp|location=Sequence derived from alignment at S-dermatodea_contig8756:7087..8156+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGCGTCTTGTCTTTCAATGTCTTGCTTCCCAATGGCAATGACGGGTGGTG GATCTATAAGGTGAGGAGGGGGGAGAGGTCGAGGGGTGCGTGGGGGTACA TTGCACTCTGCATCAAAGGTGGGGTTAATTCTGTATGCGATCATATAACG CTCGTACTCTTGAGGCAAGCAGCAAGCGCCCATTGTTCCAGCTTTGCTAG CGCACAGATTGCTACTATTAGTAAGACTGTTGTGTATTCGCGAGCGAAGG GACTGGCCCCCGGGTGCTTTTAAGCGGCGGGACGCGAAAAGCAGTCCATG TGCTTCTATTTCGAATCCTGGTATGCTTGGTCCAGAGCATCCGCAAACGG AAAGCTTCCGTGCCCGTACCGCATTTAACGCGATCGGCACAACGCCTCCT TCACCCGGCCAAGCAAGGACACGCCATGGGCCAATCACCCACCGTGCTGG GGTGATGACGCCCGTCGCCGTGCTGCCATCGTATCTCGGGAGGCCAGCCG CGCTATGATGTCGACGTCAAAGAGTCGCCAGTAAGCAAGCGGAGCGAGAG GTTTGATGCGTTTCGTGTTCGTTGCTTCCTGGGTTCGATTGTGGCCACCA AGAGGCTCCGCACCCCGGAACAGCGGTCAGCAAGATGAAGAGACAAGGGC AAGGTGTTACTCCCGCCGCGAAAAGGTTCCCCTTCAGGACAGCAGGAATT CGTTTCAAGAGAGGCCATGTGCTTGATTTTATCCCACGATTGTTTCTCTT GAGCGGCGCCACCCCGTAATTTTCTTTACAGCCTGCTGGGTAACCGCGAG CTGTGCCGGTGTTGCTGCCCCGTTGCTGCTTTACAATACTCCTACAATGC ACAAGTATGCGTTTTGTTTCTCCTTTATTTGTTTTCCGCGATGGGCTTCT TCGCGCAGAGCTACCAGCCGCACGTCCCCGAGGAGCACAGGGCGTGGCCA TACCGACAGGCCCTCATGAAGGACTGCCTGCTGCGCAAGGACGCCGACGT GGTTTGCGTACAGGAAGCGTCGGCTGAGACGTTCGAATCCGATTTCGCCT TCATGAAGGGCGCTGGGTGA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig8756:7087..8156+

>mRNA_S-dermatodea_contig8756.16903.1 ID=mRNA_S-dermatodea_contig8756.16903.1|Name=mRNA_S-dermatodea_contig8756.16903.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at S-dermatodea_contig8756:7087..8156+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGCGTCTTGTCTTTCAATGTCTTGCTTCCCAATGGCAATGACGGGTGGTG
GATCTATAAGAGCGTCTTGTCTTTCAATGTCTTGCTTCCCAATGGCAATG
ACGGGTGGTGGATCTATAAGAGCTACCAGCCGCACGTCCCCGAGGAGCAC
AGGGCGTGGCCATACCGACAGGCCCTCATGAAGGACTGCCTGCTGCGCAA
GGACGCCGACGTGGTTTGCGTACAGGAAGCGTCGGCTGAGACGTTCGAAT
CCGATTTCGCCTTCATGAAGGGCGCTGGGTGAAGCTACCAGCCGCACGTC
CCCGAGGAGCACAGGGCGTGGCCATACCGACAGGCCCTCATGAAGGACTG
CCTGCTGCGCAAGGACGCCGACGTGGTTTGCGTACAGGAAGCGTCGGCTG
AGACGTTCGAATCCGATTTCGCCTTCATGAAGGGCGCTGGGTGA
back to top