mRNA_S-dermatodea_contig8755.16899.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8755.16899.1
Unique NamemRNA_S-dermatodea_contig8755.16899.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8755.16899.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8755contigS-dermatodea_contig8755:1206..1715 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size510
Cds size507
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925364.465952-UTR-S-dermatodea_contig8755:1205..12081622925364.465952-UTR-S-dermatodea_contig8755:1205..1208Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8755 1206..1208 +
1694079883.4521813-UTR-S-dermatodea_contig8755:1205..12081694079883.4521813-UTR-S-dermatodea_contig8755:1205..1208Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8755 1206..1208 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925364.4765015-CDS-S-dermatodea_contig8755:1208..17151622925364.4765015-CDS-S-dermatodea_contig8755:1208..1715Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8755 1209..1715 +
1694079883.4602945-CDS-S-dermatodea_contig8755:1208..17151694079883.4602945-CDS-S-dermatodea_contig8755:1208..1715Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8755 1209..1715 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8755.16899.1prot_S-dermatodea_contig8755.16899.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8755 1209..1715 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8755.16899.1

>prot_S-dermatodea_contig8755.16899.1 ID=prot_S-dermatodea_contig8755.16899.1|Name=mRNA_S-dermatodea_contig8755.16899.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=169bp
MFPQPQSLKLPLLGATLLAPSPPLAPAVSFFIKTLLFSALASALAFRPWH
WRFGGGGRTLAGPLKGSLNAIACLPVTPDATAEYVANMTSSAASFAWRAS
AIAFSFLRPSVMNVSALLLTVSRQRDRVIGGLLSVAADPKRLGGTIVGVL
DPLLVPPSGYRPLFFPSL*
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mRNA from alignment at S-dermatodea_contig8755:1206..1715+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8755.16899.1 ID=mRNA_S-dermatodea_contig8755.16899.1|Name=mRNA_S-dermatodea_contig8755.16899.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=510bp|location=Sequence derived from alignment at S-dermatodea_contig8755:1206..1715+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCATGTTCCCCCAGCCTCAGAGCCTCAAACTCCCGCTGCTTGGTGCGAC
GCTACTCGCGCCCTCTCCTCCGCTTGCACCTGCGGTCAGCTTCTTCATCA
AGACCCTTCTCTTTTCCGCTCTGGCCTCGGCTCTCGCGTTCCGGCCTTGG
CATTGGCGCTTCGGGGGCGGGGGCAGAACCCTGGCCGGGCCATTGAAAGG
CTCCCTGAACGCAATCGCGTGTCTCCCCGTCACCCCAGATGCTACTGCCG
AATATGTTGCCAACATGACCTCTTCCGCGGCCTCCTTCGCGTGGCGAGCG
TCGGCCATCGCTTTCTCCTTCTTACGCCCCTCAGTCATGAACGTTTCCGC
CCTTCTCCTCACTGTCTCGCGCCAAAGGGACCGCGTTATTGGCGGCCTCC
TTTCAGTCGCCGCTGATCCTAAACGCCTTGGTGGGACCATTGTTGGTGTA
CTTGATCCATTGCTTGTCCCACCCTCTGGGTACCGCCCTCTCTTCTTCCC
TTCCCTTTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig8755:1206..1715+

>mRNA_S-dermatodea_contig8755.16899.1 ID=mRNA_S-dermatodea_contig8755.16899.1|Name=mRNA_S-dermatodea_contig8755.16899.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1014bp|location=Sequence derived from alignment at S-dermatodea_contig8755:1206..1715+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTTCCCCCAGCCTCAGAGCCTCAAACTCCCGCTGCTTGGTGCGACGCT
ACTCGCGCCCTCTCCTCCGCTTGCACCTGCGGTCAGCTTCTTCATCAAGA
CCCTTCTCTTTTCCGCTCTGGCCTCGGCTCTCGCGTTCCGGCCTTGGCAT
TGGCGCTTCGGGGGCGGGGGCAGAACCCTGGCCGGGCCATTGAAAGGCTC
CCTGAACGCAATCGCGTGTCTCCCCGTCACCCCAGATGCTACTGCCGAAT
ATGTTGCCAACATGACCTCTTCCGCGGCCTCCTTCGCGTGGCGAGCGTCG
GCCATCGCTTTCTCCTTCTTACGCCCCTCAGTCATGAACGTTTCCGCCCT
TCTCCTCACTGTCTCGCGCCAAAGGGACCGCGTTATTGGCGGCCTCCTTT
CAGTCGCCGCTGATCCTAAACGCCTTGGTGGGACCATTGTTGGTGTACTT
GATCCATTGCTTGTCCCACCCTCTGGGTACCGCCCTCTCTTCTTCCCTTC
CCTTTGAATGTTCCCCCAGCCTCAGAGCCTCAAACTCCCGCTGCTTGGTG
CGACGCTACTCGCGCCCTCTCCTCCGCTTGCACCTGCGGTCAGCTTCTTC
ATCAAGACCCTTCTCTTTTCCGCTCTGGCCTCGGCTCTCGCGTTCCGGCC
TTGGCATTGGCGCTTCGGGGGCGGGGGCAGAACCCTGGCCGGGCCATTGA
AAGGCTCCCTGAACGCAATCGCGTGTCTCCCCGTCACCCCAGATGCTACT
GCCGAATATGTTGCCAACATGACCTCTTCCGCGGCCTCCTTCGCGTGGCG
AGCGTCGGCCATCGCTTTCTCCTTCTTACGCCCCTCAGTCATGAACGTTT
CCGCCCTTCTCCTCACTGTCTCGCGCCAAAGGGACCGCGTTATTGGCGGC
CTCCTTTCAGTCGCCGCTGATCCTAAACGCCTTGGTGGGACCATTGTTGG
TGTACTTGATCCATTGCTTGTCCCACCCTCTGGGTACCGCCCTCTCTTCT
TCCCTTCCCTTTGA
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