mRNA_S-dermatodea_contig8748.16891.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8748.16891.1
Unique NamemRNA_S-dermatodea_contig8748.16891.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8748.16891.1 vs. uniprot
Match: D7FNQ2_ECTSI (Guanylate-binding protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNQ2_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 2.280e-24
Identity = 74/156 (47.44%), Postives = 93/156 (59.62%), Query Frame = 1 
Query:   58 ASMKSRTLLRWEQVKPD--ADG---DGGD--ARVELTVDEDTLNMLSHINTKIAVVSIAGPYQTGKSYFLNQFANHVQGTAAAPDGDKSPDGGEGDSERQLDVPFSVSPSVI-----GDTGEVTVHVILACMNPLPESPDTTLLLLDTPGLLKPDR 489
            A+  S TL +W++V  +  ADG   +GG+   R+ELTVDE  L  LS I+TK+AVVSIAGPY++GKSYFLN  ANHV      P   K P  G  D ER    PF  SP++      G+ G     ++ AC  PLP+   T LLLLDTPGL+ P R
Sbjct:   43 AAPSSGTLFQWKRVPVEVAADGVGPEGGEESTRMELTVDEGALQALSQIDTKLAVVSIAGPYRSGKSYFLNFLANHVLANGFDPP--KEP--GSFDFER----PFPTSPTLNAEGGGGEAGLCRFQLVPACGKPLPDQEGTALLLLDTPGLMTPRR 190
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BLAST of mRNA_S-dermatodea_contig8748.16891.1 vs. uniprot
Match: A0A6H5L2D9_9PHAE (GBP domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2D9_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 1.810e-20
Identity = 65/159 (40.88%), Postives = 83/159 (52.20%), Query Frame = 1 
Query:   58 ASMKSRTLLRWEQVKPDADGDG-------GDARVELTVDEDTLNMLSHINTKIAVVSIAGPYQTGKSYFLNQFANHVQGTAAAPDGDKSPDGGEGDSERQLDVPFSVSPSV--------IGDTGEVTVHVILACMNPLPESPDTTLLLLDTPGLLKPDR 489
            A+  S TL +W +V  +A  +G          R+ LT DE  L  LS I++K+AVVSIAGPY++GKSYFLN  ANHV      P  D     G  D ER     F  SP++          + G     ++ AC  PLP+   T LLLLDTPGL+ P R
Sbjct:   43 AASSSGTLFQWNRVPIEAAAEGVGPEGGKEGTRMALTADEGALEALSQIDSKLAVVSIAGPYRSGKSYFLNFLANHVLANGFDPPKDP----GSFDFERM----FPTSPTLNTEGGXXXXXEAGLCRFQLVPACAKPLPDQEGTALLLLDTPGLMTPRR 193
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BLAST of mRNA_S-dermatodea_contig8748.16891.1 vs. uniprot
Match: L1IUW4_GUITC (GB1/RHD3-type G domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IUW4_GUITC)

HSP 1 Score: 59.3 bits (142), Expect = 2.890e-7
Identity = 45/138 (32.61%), Postives = 64/138 (46.38%), Query Frame = 1 
Query:   79 LLRWEQVKPDADGDGGDARV-ELTVDEDTLNMLSHINTKIAVVSIAGPYQTGKSYFLNQFANHVQGTAAAPDGDKSPDGGEGDSERQLDVPFSVSPSVIGDTGEVTVHVILACMNPLPESPDTTLLLLDTPGLLKPDR 489
            LLRW  + PD       +RV  +    +TLN+LS +  ++ VVSI GPY+TGKS+ LNQ   H  G                         F V  ++  +T EVT+ +I  C +   +      + LDTPGL  P+R
Sbjct:   24 LLRW-NLGPDK------SRVLRIQSVNETLNVLSELEGEVVVVSIVGPYRTGKSFLLNQLVPHEPGNLT----------------------FKVGDTIKPETEEVTLVIIPPCAS---QGRYRHHVFLDTPGLFAPNR 129
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BLAST of mRNA_S-dermatodea_contig8748.16891.1 vs. uniprot
Match: UPI000854251D (guanylate-binding protein 3-like n=1 Tax=Nanorana parkeri TaxID=125878 RepID=UPI000854251D)

HSP 1 Score: 55.8 bits (133), Expect = 1.750e-6
Identity = 39/117 (33.33%), Postives = 57/117 (48.72%), Query Frame = 1 
Query:  139 ELTVDEDTLNMLSHINTKIAVVSIAGPYQTGKSYFLNQFANHVQGTAAAPDGDKSPDGGEGDSERQLDVPFSVSPSVIGDTGEVTVHVILACMNPLPESPDTTLLLLDTPGLLKPDR 489
            +L V+E+   +LS I+  + VVSI GPY++GKSY +N+ +    G                         FSV P++  +T  + +     CM P PE    TL+LLDT GL  PD+
Sbjct:   21 KLAVNEEAKTILSKISQPLVVVSIVGPYRSGKSYLINKLSGQPGGV------------------------FSVDPTIKANTKGIWMW----CM-PHPEKHGHTLVLLDTEGLGDPDK 108
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BLAST of mRNA_S-dermatodea_contig8748.16891.1 vs. uniprot
Match: A0A2G9QGK1_LITCT (GB1/RHD3-type G domain-containing protein (Fragment) n=1 Tax=Lithobates catesbeianus TaxID=8400 RepID=A0A2G9QGK1_LITCT)

HSP 1 Score: 50.8 bits (120), Expect = 5.330e-5
Identity = 38/116 (32.76%), Postives = 54/116 (46.55%), Query Frame = 1 
Query:  142 LTVDEDTLNMLSHINTKIAVVSIAGPYQTGKSYFLNQFANHVQGTAAAPDGDKSPDGGEGDSERQLDVPFSVSPSVIGDTGEVTVHVILACMNPLPESPDTTLLLLDTPGLLKPDR 489
            L V+E+   +L+ I   + VVSI GPY+TGKSY LN+ +   +G                         FSV  ++   T  + +     CM P P+  D TL+LLDT GL  P +
Sbjct:   22 LGVNENAQTILAQITQPLVVVSIVGPYRTGKSYLLNKLSGRQKGV------------------------FSVDSTIKATTKGIWMW----CM-PHPKKCDHTLVLLDTEGLGDPGK 108
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8748.16891.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FNQ2_ECTSI2.280e-2447.44Guanylate-binding protein, putative n=1 Tax=Ectoca... [more]
A0A6H5L2D9_9PHAE1.810e-2040.88GBP domain-containing protein (Fragment) n=1 Tax=E... [more]
L1IUW4_GUITC2.890e-732.61GB1/RHD3-type G domain-containing protein n=1 Tax=... [more]
UPI000854251D1.750e-633.33guanylate-binding protein 3-like n=1 Tax=Nanorana ... [more]
A0A2G9QGK1_LITCT5.330e-532.76GB1/RHD3-type G domain-containing protein (Fragmen... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8748contigS-dermatodea_contig8748:4455..6981 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.5
Seed ortholog evalue7.3e-22
Seed eggNOG ortholog2880.D7FNQ2
KEGG koko:K20899
KEGG Pathwayko04621,map04621
EggNOG free text desc.GTPase activity
EggNOG OGsKOG2037@1,KOG2037@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGuanylate-binding protein, N-terminal
Ec32 orthologEc-01_004670.1
Exons2
Model size493
Cds size492
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925363.674463-CDS-S-dermatodea_contig8748:4454..46461622925363.674463-CDS-S-dermatodea_contig8748:4454..4646Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8748 4455..4646 +
1694079882.884813-CDS-S-dermatodea_contig8748:4454..46461694079882.884813-CDS-S-dermatodea_contig8748:4454..4646Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8748 4455..4646 +
1622925363.6895852-CDS-S-dermatodea_contig8748:6681..69811622925363.6895852-CDS-S-dermatodea_contig8748:6681..6981Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8748 6682..6981 +
1694079882.8978355-CDS-S-dermatodea_contig8748:6681..69811694079882.8978355-CDS-S-dermatodea_contig8748:6681..6981Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8748 6682..6981 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8748.16891.1prot_S-dermatodea_contig8748.16891.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8748 4455..6981 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8748.16891.1

>prot_S-dermatodea_contig8748.16891.1 ID=prot_S-dermatodea_contig8748.16891.1|Name=mRNA_S-dermatodea_contig8748.16891.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=164bp
AAEDPAADPKPAESPSCDQASMKSRTLLRWEQVKPDADGDGGDARVELTV
DEDTLNMLSHINTKIAVVSIAGPYQTGKSYFLNQFANHVQGTAAAPDGDK
SPDGGEGDSERQLDVPFSVSPSVIGDTGEVTVHVILACMNPLPESPDTTL
LLLDTPGLLKPDR*
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mRNA from alignment at S-dermatodea_contig8748:4455..6981+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8748.16891.1 ID=mRNA_S-dermatodea_contig8748.16891.1|Name=mRNA_S-dermatodea_contig8748.16891.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2527bp|location=Sequence derived from alignment at S-dermatodea_contig8748:4455..6981+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGGCTGAAGACCCCGCGGCGGATCCAAAGCCTGCGGAGTCGCCCTCCTG
TGACCAGGCTTCAATGAAGAGTCGAACGCTGCTCCGGTGGGAACAAGTAA
AGCCGGACGCTGACGGAGATGGCGGGGATGCAAGAGTGGAGCTGACGGTG
GACGAGGACACGCTGAATATGCTGTCCCATATCAACACGAAGGTATGCAC
CGCACCGCACCGCACCAGTTCGGCGAGGGTGATTGCGTCGGCGTGTTGCG
GGCGGGACCAGCGGAGGGTGTCGGCGCTATTGATATTACTATTAATGGTG
TATTTTCCCGCGGGGCGTTCCGTGCGCGGGAGGCTCCATGGCGTGCGCAG
ACCCCCCCCCGCTGGCGGTGCGTACTTCGCCGGGCACTTGGCGGCCTATG
ATAACGATGCGCGAATGTGACAGGAACCACAAACACACACACAGATTGCA
CTGCTCCGCGCGTGCAACAACAGTAGTACAGCAGTGTACGGAAGCACATA
CTATAAAAGCAGTATACTAGCCAAGGATTTAAGTGAAAAATGCTATGTAC
ACGTGAAACTCCTCGCCAGAACAAACGGCAGATAGCGCTAAATTGACGAC
AGTAAGAAGAGCCAAGACCCAACACAAAAATCAAAACACGAGCGCGAGCG
GTGCGAGCTTCGAAATGTGATACTGTACTGACAATTCTGCCAACTGATAC
CGTTGTCCATGATGGTCCGCGCGAGCTCTTCCTTTTTTCGAGCCCTGTTT
ACTGTTTTACCATCTGTTTTATGCATTTTTCGTGTCATCGTGGCCCCTTG
GTGGGGAGTAGTGGTGGCGAGGGTTCGAGAGTGGTATTAATAGATCCCGG
AGAGGTATCATATACGTAGTGGGAGGTTCCCGAGTGGGCTCCAGGACAGA
CTGGTCCAGGGGGGCGCCCACTGAGGGTGTGACATAACGTGGCACAACAT
GTACTTCAAGGTCAGGCCTGACGTAACCCAACGGGTGCCTCACGTTGGTC
AGGCATACGTACGTGTCAATGGGGGAACCGGGAACGTTACCCAGAACCGG
GTACCCACATAATTTGTTGTTTGTTTAGTGTTCTGTTATTCCGTTTGTGT
TTTGTCCAGAACGGGTGCGAGCAATCTCGAGGAACAGGGTGTCGACCCCA
CCCACGATCACCTGACCCCCCCTAACCCCACCCACCCTTTATAGGATAAC
CCTGCGCCGCGGTTTGAGCCAAGTGTGGTAAATGCGCGTGCGGACCACCA
CACCCGTCAGTTCCGACCAAAAAAAAAATCTGGATCGTTTCTAAACAGAT
GTGTACAAAGTAAGTATTAATAGTAGTACAGTAGTAGTACAATAATGGGC
GCTTACTGAGTTTTTTTGTGGAGGGCCAACTCTGGTGACGCAATCCTTAC
CCTTGCTTCGCAGCTTTAAACTCTACGGTAGCGGCCTAGTCCTATCGAGC
GCCAGAGCGTTTCTCGCAGCTTCCCATATTCTTCTTTCTAGGCGGGCGGC
CGGGTGACCGGCCGGCCACCTGTGCCCCCCGTGGGGTGTATCCTGCCCTT
GGTATCGCTCCTGCCCTTTGGCGTGGTGGATGGTTCATAGGCGGTTGGCC
CTCTTCTAGGGCGAGTTGCGCAATAACGGGAGGGTAGAATCAAAATCTGA
ACGAGTTTCTGTCTCACATGAATGCGCCATATCACAGAGTTTCCAAGAAG
TTGTCTTTTAAGATGTTTGAGTCAGCCCTCTGGAAACGAAACAAACTCCC
CTCGTGTTACAATATATGATAACACTGGGTTTGAAGTTCCTCTAGCTAAA
GGCTGTAGGTATCCATTCGATGGGCACAAAACCAGCACCCGTCGAAAGCT
GCAGCTTCAATTTTTTTGTTGATCCCAGGCTGTGCAGTACTTGGTGCTCG
TATCTTGCGCCGATATCGTGCAAGCGTCTACAAAGTGGATTTTTGTTTCA
AACTGTGCGCGAAAATTATAAATATTGAACCACAAAAAATGTCAATCCCC
ATACCTGTACTCAATGTATTCCAACTTTGTCTCCACTATTTACGTTTCTC
CTTGAACTAGTACAACACTACATAGCTTTCGCGCGCCAGTGCACAAAAAC
GGCTCCGAAGCTCTTGTGTTGCAGCGCGTTCCAGGCCAGTCGCGCTGTCG
GAGCGTTTGGCCGTGGAATACCGATCCCCAACACACGCCCTCGCCCTCGC
CCGTCGCCGCACACCCCCCGCTCGCAGATCGCTGTCGTTTCGATCGCCGG
GCCTTACCAAACGGGCAAGTCGTACTTCCTCAATCAGTTCGCCAACCACG
TTCAAGGGACAGCGGCCGCGCCGGACGGCGACAAATCTCCAGACGGGGGA
GAGGGCGATTCGGAGAGGCAATTAGATGTGCCCTTCAGCGTGTCGCCCTC
CGTAATCGGGGACACGGGGGAGGTGACTGTGCACGTGATTCTGGCGTGCA
TGAATCCGCTGCCGGAGAGTCCGGACACGACGCTGCTTCTGTTGGACACG
CCCGGGTTGTTGAAGCCTGATAGGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig8748:4455..6981+

>mRNA_S-dermatodea_contig8748.16891.1 ID=mRNA_S-dermatodea_contig8748.16891.1|Name=mRNA_S-dermatodea_contig8748.16891.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=984bp|location=Sequence derived from alignment at S-dermatodea_contig8748:4455..6981+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGGCTGAAGACCCCGCGGCGGATCCAAAGCCTGCGGAGTCGCCCTCCTG
TGACCAGGCTTCAATGAAGAGTCGAACGCTGCTCCGGTGGGAACAAGTAA
AGCCGGACGCTGACGGAGATGGCGGGGATGCAAGAGTGGAGCTGACGGTG
GACGAGGACACGCTGAATATGCTGTCCCATATCAACACGAAGGCGGCTGA
AGACCCCGCGGCGGATCCAAAGCCTGCGGAGTCGCCCTCCTGTGACCAGG
CTTCAATGAAGAGTCGAACGCTGCTCCGGTGGGAACAAGTAAAGCCGGAC
GCTGACGGAGATGGCGGGGATGCAAGAGTGGAGCTGACGGTGGACGAGGA
CACGCTGAATATGCTGTCCCATATCAACACGAAGATCGCTGTCGTTTCGA
TCGCCGGGCCTTACCAAACGGGCAAGTCGTACTTCCTCAATCAGTTCGCC
AACCACGTTCAAGGGACAGCGGCCGCGCCGGACGGCGACAAATCTCCAGA
CGGGGGAGAGGGCGATTCGGAGAGGCAATTAGATGTGCCCTTCAGCGTGT
CGCCCTCCGTAATCGGGGACACGGGGGAGGTGACTGTGCACGTGATTCTG
GCGTGCATGAATCCGCTGCCGGAGAGTCCGGACACGACGCTGCTTCTGTT
GGACACGCCCGGGTTGTTGAAGCCTGATAGGTGAATCGCTGTCGTTTCGA
TCGCCGGGCCTTACCAAACGGGCAAGTCGTACTTCCTCAATCAGTTCGCC
AACCACGTTCAAGGGACAGCGGCCGCGCCGGACGGCGACAAATCTCCAGA
CGGGGGAGAGGGCGATTCGGAGAGGCAATTAGATGTGCCCTTCAGCGTGT
CGCCCTCCGTAATCGGGGACACGGGGGAGGTGACTGTGCACGTGATTCTG
GCGTGCATGAATCCGCTGCCGGAGAGTCCGGACACGACGCTGCTTCTGTT
GGACACGCCCGGGTTGTTGAAGCCTGATAGGTGA
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