prot_S-dermatodea_contig87426.16887.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_S-dermatodea_contig87426.16887.1
Unique Name	prot_S-dermatodea_contig87426.16887.1
Type	polypeptide
Organism	Saccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length	172

Homology

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BLAST of mRNA_S-dermatodea_contig87426.16887.1 vs. uniprot
Match: EFTU_COSCS (Elongation factor Tu, chloroplastic (Fragment) n=67 Tax=cellular organisms TaxID=131567 RepID=EFTU_COSCS)

HSP 1 Score: 316 bits (809), Expect = 1.120e-107
Identity = 160/171 (93.57%), Postives = 168/171 (98.25%), Query Frame = 0

Query:    1 MITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISSEPNLKKGDNKWVDKIYNLMESIDNYIPTPIRDVDKTFLMAIEDVFSITGRGTVATGKIDRGVVKVGETVELVGLGATK 171
            MITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPI+TGSALQALDAI++EP LKKGDNKWVDKIY+LMES+D+YIPTPIRDVDK FLMAIEDVFSITGRGTVATGKIDRG+VKVGETV+LVGLG TK
Sbjct:    3 MITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPILTGSALQALDAINNEPTLKKGDNKWVDKIYSLMESVDSYIPTPIRDVDKPFLMAIEDVFSITGRGTVATGKIDRGIVKVGETVDLVGLGDTK 173

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BLAST of mRNA_S-dermatodea_contig87426.16887.1 vs. uniprot
Match: A0A161GCU0_9PHAE (Elongation factor tu (Fragment) n=6 Tax=Phaeophyceae TaxID=2870 RepID=A0A161GCU0_9PHAE)

HSP 1 Score: 303 bits (776), Expect = 1.270e-102
Identity = 153/162 (94.44%), Postives = 161/162 (99.38%), Query Frame = 0

Query:   10 GAILVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISSEPNLKKGDNKWVDKIYNLMESIDNYIPTPIRDVDKTFLMAIEDVFSITGRGTVATGKIDRGVVKVGETVELVGLGATK 171
            GAILVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAIS+EP+LKKGDNKWVDKIY+LMES+D+YIPTPIRDVDK+FLMAIEDVFSITGRGTVATGKIDRG+VKVGETV+LVGLG TK
Sbjct:    1 GAILVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISNEPSLKKGDNKWVDKIYSLMESVDSYIPTPIRDVDKSFLMAIEDVFSITGRGTVATGKIDRGIVKVGETVDLVGLGDTK 162

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BLAST of mRNA_S-dermatodea_contig87426.16887.1 vs. uniprot
Match: Q32544_SACLA (Protein synthesis elongation factor Tu (Fragment) n=1 Tax=Saccharina latissima TaxID=309358 RepID=Q32544_SACLA)

HSP 1 Score: 302 bits (773), Expect = 3.390e-102
Identity = 154/171 (90.06%), Postives = 162/171 (94.74%), Query Frame = 0

Query:    1 MITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISSEPNLKKGDNKWVDKIYNLMESIDNYIPTPIRDVDKTFLMAIEDVFSITGRGTVATGKIDRGVVKVGETVELVGLGATK 171
            MITGAAQMDGAILVVSAADGP PQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLS Y+FPGDDIPI TGSALQA DAI++EP  KKGDNKWVDKIY LM+S+D+YIPTPIRDVDK FLMAIEDVFSITGRGTVATGKIDRG+VKVGETV+LVGLG TK
Sbjct:    3 MITGAAQMDGAILVVSAADGPTPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSKYEFPGDDIPIRTGSALQARDAINNEPPFKKGDNKWVDKIYTLMDSVDSYIPTPIRDVDKPFLMAIEDVFSITGRGTVATGKIDRGIVKVGETVDLVGLGDTK 173

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BLAST of mRNA_S-dermatodea_contig87426.16887.1 vs. uniprot
Match: A0A7S6ZPC8_9STRA (Elongation factor Tu, chloroplastic n=2 Tax=Stramenopiles TaxID=33634 RepID=A0A7S6ZPC8_9STRA)

HSP 1 Score: 302 bits (774), Expect = 7.030e-100
Identity = 152/171 (88.89%), Postives = 166/171 (97.08%), Query Frame = 0

Query:    1 MITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISSEPNLKKGDNKWVDKIYNLMESIDNYIPTPIRDVDKTFLMAIEDVFSITGRGTVATGKIDRGVVKVGETVELVGLGATK 171
            MITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDD EL+ELVELEVRELLS+YDFPGDDIPIV GSALQAL+ I++EPNLKKGDNKWVDKIY+LM++ID+YIPTP RD++KTFLMAIEDVFSITGRGTVATG+I+RGVVKVGETVELVGLG T+
Sbjct:   92 MITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDDAELLELVELEVRELLSDYDFPGDDIPIVAGSALQALEIITTEPNLKKGDNKWVDKIYSLMDAIDDYIPTPKRDIEKTFLMAIEDVFSITGRGTVATGRIERGVVKVGETVELVGLGNTR 262

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BLAST of mRNA_S-dermatodea_contig87426.16887.1 vs. uniprot
Match: Q32748_9STRA (Protein synthesis elongation factor Tu (Fragment) n=2 Tax=Bacillariophyta TaxID=2836 RepID=Q32748_9STRA)

HSP 1 Score: 283 bits (723), Expect = 1.380e-94
Identity = 142/171 (83.04%), Postives = 159/171 (92.98%), Query Frame = 0

Query:    1 MITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISSEPNLKKGDNKWVDKIYNLMESIDNYIPTPIRDVDKTFLMAIEDVFSITGRGTVATGKIDRGVVKVGETVELVGLGATK 171
            MITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVP IVVFLNKEDQVDD EL+ELVELEVRELLS YDFPGDDIPI  GSALQA++AISS P +K+GDN WVDKI+ LM+++D YIPTP RD++KTFLMAIEDVFSITGRGTVATG+I+RGVVKVG+TVE+VG+G T+
Sbjct:    3 MITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVPDIVVFLNKEDQVDDAELLELVELEVRELLSAYDFPGDDIPICPGSALQAVEAISSNPAIKRGDNPWVDKIFALMDAVDEYIPTPERDIEKTFLMAIEDVFSITGRGTVATGRIERGVVKVGDTVEIVGVGDTR 173

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BLAST of mRNA_S-dermatodea_contig87426.16887.1 vs. uniprot
Match: A0A7S4KCX9_9STRA (Hypothetical protein n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S4KCX9_9STRA)

HSP 1 Score: 283 bits (725), Expect = 3.310e-94
Identity = 143/171 (83.63%), Postives = 158/171 (92.40%), Query Frame = 0

Query:    1 MITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISSEPNLKKGDNKWVDKIYNLMESIDNYIPTPIRDVDKTFLMAIEDVFSITGRGTVATGKIDRGVVKVGETVELVGLGATK 171
            MITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVP IVVFLNKEDQVDD EL+ELVELEVRELLS YDFPGDDIPI  GSALQA++AISS P  K+GDN WVDKIY LM+++D YIPTP RD++KTFLMAIEDVFSITGRGTVATG+I+RGVVKVG+TVE+VG+G T+
Sbjct:   92 MITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVPDIVVFLNKEDQVDDEELLELVELEVRELLSAYDFPGDDIPICPGSALQAIEAISSNPETKRGDNPWVDKIYALMDAVDEYIPTPERDIEKTFLMAIEDVFSITGRGTVATGRIERGVVKVGDTVEIVGIGDTQ 262

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BLAST of mRNA_S-dermatodea_contig87426.16887.1 vs. uniprot
Match: Q8HUC5_SKECO (Elongation factor Tu (Fragment) n=1 Tax=Skeletonema costatum TaxID=2843 RepID=Q8HUC5_SKECO)

HSP 1 Score: 283 bits (725), Expect = 1.340e-93
Identity = 142/171 (83.04%), Postives = 160/171 (93.57%), Query Frame = 0

Query:    1 MITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISSEPNLKKGDNKWVDKIYNLMESIDNYIPTPIRDVDKTFLMAIEDVFSITGRGTVATGKIDRGVVKVGETVELVGLGATK 171
            MITGAAQMDGAILVVSAADGPMPQTREHILL+KQVGVPHIVVFLNK+DQVDD EL+ELVELEVRELLS YDFPGDDIPI  GSAL+A++AISS P +K+GDN WVDKIY LM+++D+YIPTP RDV+KTFLMAIEDVFSITGRGTVATG+I+RGVVKVGETVE+VG+  T+
Sbjct:   69 MITGAAQMDGAILVVSAADGPMPQTREHILLAKQVGVPHIVVFLNKQDQVDDDELLELVELEVRELLSQYDFPGDDIPICPGSALRAIEAISSNPEIKRGDNPWVDKIYGLMDAVDSYIPTPERDVEKTFLMAIEDVFSITGRGTVATGRIERGVVKVGETVEIVGVVDTQ 239

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BLAST of mRNA_S-dermatodea_contig87426.16887.1 vs. uniprot
Match: A0A516ZAG0_9STRA (Elongation factor Tu, chloroplastic n=4 Tax=Dictyochophyceae TaxID=39119 RepID=A0A516ZAG0_9STRA)

HSP 1 Score: 285 bits (729), Expect = 4.530e-93
Identity = 139/171 (81.29%), Postives = 160/171 (93.57%), Query Frame = 0

Query:    1 MITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISSEPNLKKGDNKWVDKIYNLMESIDNYIPTPIRDVDKTFLMAIEDVFSITGRGTVATGKIDRGVVKVGETVELVGLGATK 171
            MITGAAQMDGAILVVSAADGPMPQTREHILL+KQVGVP+IVVFLNKEDQVDD EL+ELVELEVRELLSNYDFPGDDIPIV GSALQAL+A+ + P + +GDNKWVDKI+NLM+ +DNYIPTP RD +KTFLMA+EDVFSITGRGTVATG+I+RG++ VG+T+E+VGLG T+
Sbjct:   92 MITGAAQMDGAILVVSAADGPMPQTREHILLAKQVGVPNIVVFLNKEDQVDDEELIELVELEVRELLSNYDFPGDDIPIVPGSALQALEAVIATPAIGRGDNKWVDKIFNLMDEVDNYIPTPERDTEKTFLMAVEDVFSITGRGTVATGRIERGIINVGDTIEIVGLGDTQ 262

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BLAST of mRNA_S-dermatodea_contig87426.16887.1 vs. uniprot
Match: B0M2B5_9STRA (Elongation factor Tu (Fragment) n=1 Tax=Chattonella marina var. ovata TaxID=859643 RepID=B0M2B5_9STRA)

HSP 1 Score: 279 bits (714), Expect = 2.020e-92
Identity = 139/171 (81.29%), Postives = 157/171 (91.81%), Query Frame = 0

Query:    1 MITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISSEPNLKKGDNKWVDKIYNLMESIDNYIPTPIRDVDKTFLMAIEDVFSITGRGTVATGKIDRGVVKVGETVELVGLGATK 171
            MITGAAQMDGAILVVSAADGPMPQTREHILL+KQVGVPHIVVFLNKEDQVDD EL+ LVELEVRELLSNYDFPGDDIP + GSA QAL  I+  P++ +GD+KWVDKI+ LM+++D+YIP P RDVDKTFLMAIEDVFSITGRGTVATG+I+RGVVKVGETV++VGLG T+
Sbjct:   76 MITGAAQMDGAILVVSAADGPMPQTREHILLAKQVGVPHIVVFLNKEDQVDDEELLGLVELEVRELLSNYDFPGDDIPCIPGSAPQALQVIAENPSIGRGDDKWVDKIFELMDAVDDYIPAPERDVDKTFLMAIEDVFSITGRGTVATGRIERGVVKVGETVQIVGLGETR 246

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BLAST of mRNA_S-dermatodea_contig87426.16887.1 vs. uniprot
Match: B2XTC8_HETAK (Elongation factor Tu, chloroplastic n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=B2XTC8_HETAK)

HSP 1 Score: 282 bits (721), Expect = 7.120e-92
Identity = 141/171 (82.46%), Postives = 155/171 (90.64%), Query Frame = 0

Query:    1 MITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISSEPNLKKGDNKWVDKIYNLMESIDNYIPTPIRDVDKTFLMAIEDVFSITGRGTVATGKIDRGVVKVGETVELVGLGATK 171
            MITGAAQMDGAILVVSAADGPMPQTREHILL+KQVGVPHIVVFLNKEDQVDD EL+ LVELEVR+LLSNYDFPGDDIP + GSALQAL AI     +KKG+NKWVDKIY LME++D YIP P RDVDKTFLMA+EDVFSITGRGTVATG+I+RGVVKVGETV++VGL  T+
Sbjct:   92 MITGAAQMDGAILVVSAADGPMPQTREHILLAKQVGVPHIVVFLNKEDQVDDEELLGLVELEVRDLLSNYDFPGDDIPCIPGSALQALQAIQENNTIKKGENKWVDKIYQLMEAVDEYIPAPERDVDKTFLMAVEDVFSITGRGTVATGRIERGVVKVGETVQIVGLSETR 262

The following BLAST results are available for this feature:

BLAST of mRNA_S-dermatodea_contig87426.16887.1 vs. uniprot

BLAST of mRNA_S-dermatodea_contig87426.16887.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
EFTU_COSCS	1.120e-107	93.57	Elongation factor Tu, chloroplastic (Fragment) n=6...	[more]
A0A161GCU0_9PHAE	1.270e-102	94.44	Elongation factor tu (Fragment) n=6 Tax=Phaeophyce...	[more]
Q32544_SACLA	3.390e-102	90.06	Protein synthesis elongation factor Tu (Fragment) ...	[more]
A0A7S6ZPC8_9STRA	7.030e-100	88.89	Elongation factor Tu, chloroplastic n=2 Tax=Strame...	[more]
Q32748_9STRA	1.380e-94	83.04	Protein synthesis elongation factor Tu (Fragment) ...	[more]
A0A7S4KCX9_9STRA	3.310e-94	83.63	Hypothetical protein n=2 Tax=Bacillariophyta TaxID...	[more]
Q8HUC5_SKECO	1.340e-93	83.04	Elongation factor Tu (Fragment) n=1 Tax=Skeletonem...	[more]
A0A516ZAG0_9STRA	4.530e-93	81.29	Elongation factor Tu, chloroplastic n=4 Tax=Dictyo...	[more]
B0M2B5_9STRA	2.020e-92	81.29	Elongation factor Tu (Fragment) n=1 Tax=Chattonell...	[more]
B2XTC8_HETAK	7.120e-92	82.46	Elongation factor Tu, chloroplastic n=4 Tax=Hetero...	[more]

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InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000795	Transcription factor, GTP-binding domain	PRINTS	PR00315	ELONGATNFCT	coord: 3..14 score: 66.17 coord: 40..49 score: 53.18
IPR000795	Transcription factor, GTP-binding domain	PFAM	PF00009	GTP_EFTU	coord: 1..120 e-value: 1.1E-22 score: 80.5
IPR000795	Transcription factor, GTP-binding domain	PROSITE	PS51722	G_TR_2	coord: 1..123 score: 32.494
None	No IPR available	GENE3D	2.40.30.10		coord: 125..171 e-value: 6.7E-15 score: 57.1
None	No IPR available	GENE3D	3.40.50.300		coord: 1..122 e-value: 8.4E-33 score: 115.4
None	No IPR available	PANTHER	PTHR43721:SF19		coord: 1..170
None	No IPR available	PANTHER	PTHR43721	FAMILY NOT NAMED	coord: 1..170
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 1..145

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-dermatodea_contig87426	contig	S-dermatodea_contig87426:40..555 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_S-dermatodea_contig87426.16887.1	mRNA_S-dermatodea_contig87426.16887.1	Saccorhiza dermatodea SderLu1190fm monoicous	mRNA	S-dermatodea_contig87426 1..654 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_S-dermatodea_contig87426.16887.1 ID=prot_S-dermatodea_contig87426.16887.1|Name=mRNA_S-dermatodea_contig87426.16887.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=172bp
MITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQV
DDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISSEPNLKKG
DNKWVDKIYNLMESIDNYIPTPIRDVDKTFLMAIEDVFSITGRGTVATGK
IDRGVVKVGETVELVGLGATK*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000795	TF_GTP-bd_dom
IPR027417	P-loop_NTPase