mRNA_S-dermatodea_contig87426.16887.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig87426.16887.1 vs. uniprot
Match: A0A7S6ZPC8_9STRA (Elongation factor Tu, chloroplastic n=2 Tax=Stramenopiles TaxID=33634 RepID=A0A7S6ZPC8_9STRA) HSP 1 Score: 389 bits (999), Expect = 3.380e-133 Identity = 194/218 (88.99%), Postives = 209/218 (95.87%), Query Frame = 1
Query: 1 RGITINTAHVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISSEPNLKKGDNKWVDKIYNLMESIDNYIPTPIRDVDKTFLMAIEDVFSITGRGTVATGKIDRGVVKVGETVELVGLGATK*TTVTGVEMFQKNL 654
RGITINTAHVEYET+ RHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDD EL+ELVELEVRELLS+YDFPGDDIPIV GSALQAL+ I++EPNLKKGDNKWVDKIY+LM++ID+YIPTP RD++KTFLMAIEDVFSITGRGTVATG+I+RGVVKVGETVELVGLG T+ T VTGVEMFQK L
Sbjct: 59 RGITINTAHVEYETDIRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDDAELLELVELEVRELLSDYDFPGDDIPIVAGSALQALEIITTEPNLKKGDNKWVDKIYSLMDAIDDYIPTPKRDIEKTFLMAIEDVFSITGRGTVATGRIERGVVKVGETVELVGLGNTRSTIVTGVEMFQKTL 276
BLAST of mRNA_S-dermatodea_contig87426.16887.1 vs. uniprot
Match: A0A7S4KCX9_9STRA (Hypothetical protein n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S4KCX9_9STRA) HSP 1 Score: 375 bits (962), Expect = 1.860e-129 Identity = 185/217 (85.25%), Postives = 203/217 (93.55%), Query Frame = 1
Query: 1 RGITINTAHVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISSEPNLKKGDNKWVDKIYNLMESIDNYIPTPIRDVDKTFLMAIEDVFSITGRGTVATGKIDRGVVKVGETVELVGLGATK*TTVTGVEMFQKN 651
RGITINTAHVEYETE+RHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVP IVVFLNKEDQVDD EL+ELVELEVRELLS YDFPGDDIPI GSALQA++AISS P K+GDN WVDKIY LM+++D YIPTP RD++KTFLMAIEDVFSITGRGTVATG+I+RGVVKVG+TVE+VG+G T+ TT+TG+EMFQKN
Sbjct: 59 RGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVPDIVVFLNKEDQVDDEELLELVELEVRELLSAYDFPGDDIPICPGSALQAIEAISSNPETKRGDNPWVDKIYALMDAVDEYIPTPERDIEKTFLMAIEDVFSITGRGTVATGRIERGVVKVGDTVEIVGIGDTQTTTITGIEMFQKN 275
BLAST of mRNA_S-dermatodea_contig87426.16887.1 vs. uniprot
Match: A0A516ZAG0_9STRA (Elongation factor Tu, chloroplastic n=4 Tax=Dictyochophyceae TaxID=39119 RepID=A0A516ZAG0_9STRA) HSP 1 Score: 377 bits (969), Expect = 1.220e-128 Identity = 184/218 (84.40%), Postives = 205/218 (94.04%), Query Frame = 1
Query: 1 RGITINTAHVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISSEPNLKKGDNKWVDKIYNLMESIDNYIPTPIRDVDKTFLMAIEDVFSITGRGTVATGKIDRGVVKVGETVELVGLGATK*TTVTGVEMFQKNL 654
RGITINTAHVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILL+KQVGVP+IVVFLNKEDQVDD EL+ELVELEVRELLSNYDFPGDDIPIV GSALQAL+A+ + P + +GDNKWVDKI+NLM+ +DNYIPTP RD +KTFLMA+EDVFSITGRGTVATG+I+RG++ VG+T+E+VGLG T+ TTVTGVEMFQK L
Sbjct: 59 RGITINTAHVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLAKQVGVPNIVVFLNKEDQVDDEELIELVELEVRELLSNYDFPGDDIPIVPGSALQALEAVIATPAIGRGDNKWVDKIFNLMDEVDNYIPTPERDTEKTFLMAVEDVFSITGRGTVATGRIERGIINVGDTIEIVGLGDTQTTTVTGVEMFQKTL 276
BLAST of mRNA_S-dermatodea_contig87426.16887.1 vs. uniprot
Match: B0M2B5_9STRA (Elongation factor Tu (Fragment) n=1 Tax=Chattonella marina var. ovata TaxID=859643 RepID=B0M2B5_9STRA) HSP 1 Score: 371 bits (953), Expect = 5.750e-128 Identity = 183/218 (83.94%), Postives = 202/218 (92.66%), Query Frame = 1
Query: 1 RGITINTAHVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISSEPNLKKGDNKWVDKIYNLMESIDNYIPTPIRDVDKTFLMAIEDVFSITGRGTVATGKIDRGVVKVGETVELVGLGATK*TTVTGVEMFQKNL 654
RGITINTAHVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILL+KQVGVPHIVVFLNKEDQVDD EL+ LVELEVRELLSNYDFPGDDIP + GSA QAL I+ P++ +GD+KWVDKI+ LM+++D+YIP P RDVDKTFLMAIEDVFSITGRGTVATG+I+RGVVKVGETV++VGLG T+ TTVTG+EMFQK L
Sbjct: 43 RGITINTAHVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLAKQVGVPHIVVFLNKEDQVDDEELLGLVELEVRELLSNYDFPGDDIPCIPGSAPQALQVIAENPSIGRGDDKWVDKIFELMDAVDDYIPAPERDVDKTFLMAIEDVFSITGRGTVATGRIERGVVKVGETVQIVGLGETRETTVTGIEMFQKTL 260
BLAST of mRNA_S-dermatodea_contig87426.16887.1 vs. uniprot
Match: Q8HUC5_SKECO (Elongation factor Tu (Fragment) n=1 Tax=Skeletonema costatum TaxID=2843 RepID=Q8HUC5_SKECO) HSP 1 Score: 371 bits (953), Expect = 1.930e-127 Identity = 183/218 (83.94%), Postives = 203/218 (93.12%), Query Frame = 1
Query: 1 RGITINTAHVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISSEPNLKKGDNKWVDKIYNLMESIDNYIPTPIRDVDKTFLMAIEDVFSITGRGTVATGKIDRGVVKVGETVELVGLGATK*TTVTGVEMFQKNL 654
RGITINTAHVEYET RHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILL+KQVGVPHIVVFLNK+DQVDD EL+ELVELEVRELLS YDFPGDDIPI GSAL+A++AISS P +K+GDN WVDKIY LM+++D+YIPTP RDV+KTFLMAIEDVFSITGRGTVATG+I+RGVVKVGETVE+VG+ T+ TT+TG+EMFQK L
Sbjct: 36 RGITINTAHVEYETADRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLAKQVGVPHIVVFLNKQDQVDDDELLELVELEVRELLSQYDFPGDDIPICPGSALRAIEAISSNPEIKRGDNPWVDKIYGLMDAVDSYIPTPERDVEKTFLMAIEDVFSITGRGTVATGRIERGVVKVGETVEIVGVVDTQTTTITGIEMFQKTL 253
BLAST of mRNA_S-dermatodea_contig87426.16887.1 vs. uniprot
Match: C6KIM9_AURAN (Elongation factor Tu, chloroplastic n=4 Tax=Pelagomonadales TaxID=54409 RepID=C6KIM9_AURAN) HSP 1 Score: 372 bits (955), Expect = 1.620e-126 Identity = 181/218 (83.03%), Postives = 204/218 (93.58%), Query Frame = 1
Query: 1 RGITINTAHVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISSEPNLKKGDNKWVDKIYNLMESIDNYIPTPIRDVDKTFLMAIEDVFSITGRGTVATGKIDRGVVKVGETVELVGLGATK*TTVTGVEMFQKNL 654
RGITINTAHVEYETE+RHYAHVDCPGHADYVKNMITGAAQMDGAILV SAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDD EL+ELVELEVRELLS+YDFPGDDIP V GSAL A++AI+++ ++ +GDNKWVDKIY LM+++D+YIPTP+RD +KTFLMAIED FSITGRGTV+TG+I+RG VKVGETVE+VGLG T+ TTVTG+EMFQK L
Sbjct: 59 RGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDDDELLELVELEVRELLSSYDFPGDDIPCVAGSALMAIEAINADSSVARGDNKWVDKIYGLMDAVDDYIPTPVRDTEKTFLMAIEDAFSITGRGTVSTGRIERGTVKVGETVEIVGLGDTRETTVTGIEMFQKTL 276
BLAST of mRNA_S-dermatodea_contig87426.16887.1 vs. uniprot
Match: B2XTC8_HETAK (Elongation factor Tu, chloroplastic n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=B2XTC8_HETAK) HSP 1 Score: 372 bits (954), Expect = 2.220e-126 Identity = 183/218 (83.94%), Postives = 200/218 (91.74%), Query Frame = 1
Query: 1 RGITINTAHVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISSEPNLKKGDNKWVDKIYNLMESIDNYIPTPIRDVDKTFLMAIEDVFSITGRGTVATGKIDRGVVKVGETVELVGLGATK*TTVTGVEMFQKNL 654
RGITINTAHVEYET++RHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILL+KQVGVPHIVVFLNKEDQVDD EL+ LVELEVR+LLSNYDFPGDDIP + GSALQAL AI +KKG+NKWVDKIY LME++D YIP P RDVDKTFLMA+EDVFSITGRGTVATG+I+RGVVKVGETV++VGL T+ TTVTG+EMFQK L
Sbjct: 59 RGITINTAHVEYETDNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLAKQVGVPHIVVFLNKEDQVDDEELLGLVELEVRDLLSNYDFPGDDIPCIPGSALQALQAIQENNTIKKGENKWVDKIYQLMEAVDEYIPAPERDVDKTFLMAVEDVFSITGRGTVATGRIERGVVKVGETVQIVGLSETRETTVTGIEMFQKTL 276
BLAST of mRNA_S-dermatodea_contig87426.16887.1 vs. uniprot
Match: A0A1X9PTY9_9RHOD (Elongation factor Tu, chloroplastic n=2 Tax=Rhodellaceae TaxID=661029 RepID=A0A1X9PTY9_9RHOD) HSP 1 Score: 372 bits (954), Expect = 2.300e-126 Identity = 180/218 (82.57%), Postives = 208/218 (95.41%), Query Frame = 1
Query: 1 RGITINTAHVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISSEPNLKKGDNKWVDKIYNLMESIDNYIPTPIRDVDKTFLMAIEDVFSITGRGTVATGKIDRGVVKVGETVELVGLGATK*TTVTGVEMFQKNL 654
RGITINTAHVEYETE+RHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILL+KQVGVP +VVFLNKEDQVDD+EL+ELVELEVRELLSNYDFPGDDIPIV+GSAL AL+A+ P+++KG++KWVDKI++LM+++D+YIPTP RDVDKTFLMA+EDVFSITGRGTVATG+I+RG+VKVGET+E+VGL T+ TT+TG+EMFQK L
Sbjct: 59 RGITINTAHVEYETETRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLAKQVGVPTLVVFLNKEDQVDDVELLELVELEVRELLSNYDFPGDDIPIVSGSALLALEAVIKNPSIQKGEDKWVDKIFSLMDAVDDYIPTPERDVDKTFLMAVEDVFSITGRGTVATGRIERGIVKVGETIEIVGLRDTQTTTITGLEMFQKTL 276
BLAST of mRNA_S-dermatodea_contig87426.16887.1 vs. uniprot
Match: B3SR00_9RHOD (Elongation factor Tu (Fragment) n=3 Tax=Rhodophyta TaxID=2763 RepID=B3SR00_9RHOD) HSP 1 Score: 365 bits (938), Expect = 1.100e-125 Identity = 176/218 (80.73%), Postives = 203/218 (93.12%), Query Frame = 1
Query: 1 RGITINTAHVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISSEPNLKKGDNKWVDKIYNLMESIDNYIPTPIRDVDKTFLMAIEDVFSITGRGTVATGKIDRGVVKVGETVELVGLGATK*TTVTGVEMFQKNL 654
RGITINTAHVEYETE RHYAHVDCPGHADYVKNMITGAAQMDGAILV+SAADGPMPQTREHILL+KQVGVP+IVVFLNKEDQVDD EL+ELVELE RELLS YDFPGDDIP V+GSAL AL+A+S+ P +K+G++KWVDKI LM+++DNY+PTP RDVDKTFLMA+EDVFSITGRGTVATG+I+RG+VKVG+++E+VGL T+ TT+TG+EMFQK L
Sbjct: 13 RGITINTAHVEYETEERHYAHVDCPGHADYVKNMITGAAQMDGAILVISAADGPMPQTREHILLAKQVGVPNIVVFLNKEDQVDDAELLELVELEARELLSQYDFPGDDIPFVSGSALLALEAVSANPKIKRGEDKWVDKILALMDAVDNYVPTPERDVDKTFLMAVEDVFSITGRGTVATGRIERGIVKVGDSIEIVGLRDTQTTTITGLEMFQKTL 230
BLAST of mRNA_S-dermatodea_contig87426.16887.1 vs. uniprot
Match: A0A6P1AKF6_9CYAN (Elongation factor Tu n=1 Tax=Kamptonema sp. SIO1D9 TaxID=2607808 RepID=A0A6P1AKF6_9CYAN) HSP 1 Score: 370 bits (949), Expect = 1.320e-125 Identity = 181/218 (83.03%), Postives = 203/218 (93.12%), Query Frame = 1
Query: 1 RGITINTAHVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISSEPNLKKGDNKWVDKIYNLMESIDNYIPTPIRDVDKTFLMAIEDVFSITGRGTVATGKIDRGVVKVGETVELVGLGATK*TTVTGVEMFQKNL 654
RGITINTAHVEY+T++RHYAHVDCPGHADYVKNMITGAAQMDG ILVVSAADGPMPQTREHILL+KQVGVP +VVFLNK+DQVDD EL+ELVELEVRELLS+YDFPGDDIP+V GSAL AL+A++ +PN+KKGDN+WVDKIY LM+++D YIPTP RDVDK FLMA+EDVFSITGRGTVATG+I+RG VKVGETVELVG+ TK TTVTGVEMFQK L
Sbjct: 59 RGITINTAHVEYQTDNRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAADGPMPQTREHILLAKQVGVPSLVVFLNKQDQVDDEELLELVELEVRELLSSYDFPGDDIPVVAGSALLALEALTKDPNIKKGDNEWVDKIYELMDNVDEYIPTPERDVDKPFLMAVEDVFSITGRGTVATGRIERGKVKVGETVELVGIKDTKSTTVTGVEMFQKTL 276 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig87426.16887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig87426.16887.1 >prot_S-dermatodea_contig87426.16887.1 ID=prot_S-dermatodea_contig87426.16887.1|Name=mRNA_S-dermatodea_contig87426.16887.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=172bp MITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVback to top mRNA from alignment at S-dermatodea_contig87426:1..654- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig87426.16887.1 ID=mRNA_S-dermatodea_contig87426.16887.1|Name=mRNA_S-dermatodea_contig87426.16887.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=654bp|location=Sequence derived from alignment at S-dermatodea_contig87426:1..654- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig87426:1..654- >mRNA_S-dermatodea_contig87426.16887.1 ID=mRNA_S-dermatodea_contig87426.16887.1|Name=mRNA_S-dermatodea_contig87426.16887.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1032bp|location=Sequence derived from alignment at S-dermatodea_contig87426:1..654- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |