mRNA_S-dermatodea_contig87426.16887.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig87426.16887.1
Unique NamemRNA_S-dermatodea_contig87426.16887.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig87426.16887.1 vs. uniprot
Match: A0A7S6ZPC8_9STRA (Elongation factor Tu, chloroplastic n=2 Tax=Stramenopiles TaxID=33634 RepID=A0A7S6ZPC8_9STRA)

HSP 1 Score: 389 bits (999), Expect = 3.380e-133
Identity = 194/218 (88.99%), Postives = 209/218 (95.87%), Query Frame = 1
Query:    1 RGITINTAHVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISSEPNLKKGDNKWVDKIYNLMESIDNYIPTPIRDVDKTFLMAIEDVFSITGRGTVATGKIDRGVVKVGETVELVGLGATK*TTVTGVEMFQKNL 654
            RGITINTAHVEYET+ RHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDD EL+ELVELEVRELLS+YDFPGDDIPIV GSALQAL+ I++EPNLKKGDNKWVDKIY+LM++ID+YIPTP RD++KTFLMAIEDVFSITGRGTVATG+I+RGVVKVGETVELVGLG T+ T VTGVEMFQK L
Sbjct:   59 RGITINTAHVEYETDIRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDDAELLELVELEVRELLSDYDFPGDDIPIVAGSALQALEIITTEPNLKKGDNKWVDKIYSLMDAIDDYIPTPKRDIEKTFLMAIEDVFSITGRGTVATGRIERGVVKVGETVELVGLGNTRSTIVTGVEMFQKTL 276          
BLAST of mRNA_S-dermatodea_contig87426.16887.1 vs. uniprot
Match: A0A7S4KCX9_9STRA (Hypothetical protein n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S4KCX9_9STRA)

HSP 1 Score: 375 bits (962), Expect = 1.860e-129
Identity = 185/217 (85.25%), Postives = 203/217 (93.55%), Query Frame = 1
Query:    1 RGITINTAHVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISSEPNLKKGDNKWVDKIYNLMESIDNYIPTPIRDVDKTFLMAIEDVFSITGRGTVATGKIDRGVVKVGETVELVGLGATK*TTVTGVEMFQKN 651
            RGITINTAHVEYETE+RHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVP IVVFLNKEDQVDD EL+ELVELEVRELLS YDFPGDDIPI  GSALQA++AISS P  K+GDN WVDKIY LM+++D YIPTP RD++KTFLMAIEDVFSITGRGTVATG+I+RGVVKVG+TVE+VG+G T+ TT+TG+EMFQKN
Sbjct:   59 RGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVPDIVVFLNKEDQVDDEELLELVELEVRELLSAYDFPGDDIPICPGSALQAIEAISSNPETKRGDNPWVDKIYALMDAVDEYIPTPERDIEKTFLMAIEDVFSITGRGTVATGRIERGVVKVGDTVEIVGIGDTQTTTITGIEMFQKN 275          
BLAST of mRNA_S-dermatodea_contig87426.16887.1 vs. uniprot
Match: A0A516ZAG0_9STRA (Elongation factor Tu, chloroplastic n=4 Tax=Dictyochophyceae TaxID=39119 RepID=A0A516ZAG0_9STRA)

HSP 1 Score: 377 bits (969), Expect = 1.220e-128
Identity = 184/218 (84.40%), Postives = 205/218 (94.04%), Query Frame = 1
Query:    1 RGITINTAHVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISSEPNLKKGDNKWVDKIYNLMESIDNYIPTPIRDVDKTFLMAIEDVFSITGRGTVATGKIDRGVVKVGETVELVGLGATK*TTVTGVEMFQKNL 654
            RGITINTAHVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILL+KQVGVP+IVVFLNKEDQVDD EL+ELVELEVRELLSNYDFPGDDIPIV GSALQAL+A+ + P + +GDNKWVDKI+NLM+ +DNYIPTP RD +KTFLMA+EDVFSITGRGTVATG+I+RG++ VG+T+E+VGLG T+ TTVTGVEMFQK L
Sbjct:   59 RGITINTAHVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLAKQVGVPNIVVFLNKEDQVDDEELIELVELEVRELLSNYDFPGDDIPIVPGSALQALEAVIATPAIGRGDNKWVDKIFNLMDEVDNYIPTPERDTEKTFLMAVEDVFSITGRGTVATGRIERGIINVGDTIEIVGLGDTQTTTVTGVEMFQKTL 276          
BLAST of mRNA_S-dermatodea_contig87426.16887.1 vs. uniprot
Match: B0M2B5_9STRA (Elongation factor Tu (Fragment) n=1 Tax=Chattonella marina var. ovata TaxID=859643 RepID=B0M2B5_9STRA)

HSP 1 Score: 371 bits (953), Expect = 5.750e-128
Identity = 183/218 (83.94%), Postives = 202/218 (92.66%), Query Frame = 1
Query:    1 RGITINTAHVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISSEPNLKKGDNKWVDKIYNLMESIDNYIPTPIRDVDKTFLMAIEDVFSITGRGTVATGKIDRGVVKVGETVELVGLGATK*TTVTGVEMFQKNL 654
            RGITINTAHVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILL+KQVGVPHIVVFLNKEDQVDD EL+ LVELEVRELLSNYDFPGDDIP + GSA QAL  I+  P++ +GD+KWVDKI+ LM+++D+YIP P RDVDKTFLMAIEDVFSITGRGTVATG+I+RGVVKVGETV++VGLG T+ TTVTG+EMFQK L
Sbjct:   43 RGITINTAHVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLAKQVGVPHIVVFLNKEDQVDDEELLGLVELEVRELLSNYDFPGDDIPCIPGSAPQALQVIAENPSIGRGDDKWVDKIFELMDAVDDYIPAPERDVDKTFLMAIEDVFSITGRGTVATGRIERGVVKVGETVQIVGLGETRETTVTGIEMFQKTL 260          
BLAST of mRNA_S-dermatodea_contig87426.16887.1 vs. uniprot
Match: Q8HUC5_SKECO (Elongation factor Tu (Fragment) n=1 Tax=Skeletonema costatum TaxID=2843 RepID=Q8HUC5_SKECO)

HSP 1 Score: 371 bits (953), Expect = 1.930e-127
Identity = 183/218 (83.94%), Postives = 203/218 (93.12%), Query Frame = 1
Query:    1 RGITINTAHVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISSEPNLKKGDNKWVDKIYNLMESIDNYIPTPIRDVDKTFLMAIEDVFSITGRGTVATGKIDRGVVKVGETVELVGLGATK*TTVTGVEMFQKNL 654
            RGITINTAHVEYET  RHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILL+KQVGVPHIVVFLNK+DQVDD EL+ELVELEVRELLS YDFPGDDIPI  GSAL+A++AISS P +K+GDN WVDKIY LM+++D+YIPTP RDV+KTFLMAIEDVFSITGRGTVATG+I+RGVVKVGETVE+VG+  T+ TT+TG+EMFQK L
Sbjct:   36 RGITINTAHVEYETADRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLAKQVGVPHIVVFLNKQDQVDDDELLELVELEVRELLSQYDFPGDDIPICPGSALRAIEAISSNPEIKRGDNPWVDKIYGLMDAVDSYIPTPERDVEKTFLMAIEDVFSITGRGTVATGRIERGVVKVGETVEIVGVVDTQTTTITGIEMFQKTL 253          
BLAST of mRNA_S-dermatodea_contig87426.16887.1 vs. uniprot
Match: C6KIM9_AURAN (Elongation factor Tu, chloroplastic n=4 Tax=Pelagomonadales TaxID=54409 RepID=C6KIM9_AURAN)

HSP 1 Score: 372 bits (955), Expect = 1.620e-126
Identity = 181/218 (83.03%), Postives = 204/218 (93.58%), Query Frame = 1
Query:    1 RGITINTAHVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISSEPNLKKGDNKWVDKIYNLMESIDNYIPTPIRDVDKTFLMAIEDVFSITGRGTVATGKIDRGVVKVGETVELVGLGATK*TTVTGVEMFQKNL 654
            RGITINTAHVEYETE+RHYAHVDCPGHADYVKNMITGAAQMDGAILV SAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDD EL+ELVELEVRELLS+YDFPGDDIP V GSAL A++AI+++ ++ +GDNKWVDKIY LM+++D+YIPTP+RD +KTFLMAIED FSITGRGTV+TG+I+RG VKVGETVE+VGLG T+ TTVTG+EMFQK L
Sbjct:   59 RGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDDDELLELVELEVRELLSSYDFPGDDIPCVAGSALMAIEAINADSSVARGDNKWVDKIYGLMDAVDDYIPTPVRDTEKTFLMAIEDAFSITGRGTVSTGRIERGTVKVGETVEIVGLGDTRETTVTGIEMFQKTL 276          
BLAST of mRNA_S-dermatodea_contig87426.16887.1 vs. uniprot
Match: B2XTC8_HETAK (Elongation factor Tu, chloroplastic n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=B2XTC8_HETAK)

HSP 1 Score: 372 bits (954), Expect = 2.220e-126
Identity = 183/218 (83.94%), Postives = 200/218 (91.74%), Query Frame = 1
Query:    1 RGITINTAHVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISSEPNLKKGDNKWVDKIYNLMESIDNYIPTPIRDVDKTFLMAIEDVFSITGRGTVATGKIDRGVVKVGETVELVGLGATK*TTVTGVEMFQKNL 654
            RGITINTAHVEYET++RHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILL+KQVGVPHIVVFLNKEDQVDD EL+ LVELEVR+LLSNYDFPGDDIP + GSALQAL AI     +KKG+NKWVDKIY LME++D YIP P RDVDKTFLMA+EDVFSITGRGTVATG+I+RGVVKVGETV++VGL  T+ TTVTG+EMFQK L
Sbjct:   59 RGITINTAHVEYETDNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLAKQVGVPHIVVFLNKEDQVDDEELLGLVELEVRDLLSNYDFPGDDIPCIPGSALQALQAIQENNTIKKGENKWVDKIYQLMEAVDEYIPAPERDVDKTFLMAVEDVFSITGRGTVATGRIERGVVKVGETVQIVGLSETRETTVTGIEMFQKTL 276          
BLAST of mRNA_S-dermatodea_contig87426.16887.1 vs. uniprot
Match: A0A1X9PTY9_9RHOD (Elongation factor Tu, chloroplastic n=2 Tax=Rhodellaceae TaxID=661029 RepID=A0A1X9PTY9_9RHOD)

HSP 1 Score: 372 bits (954), Expect = 2.300e-126
Identity = 180/218 (82.57%), Postives = 208/218 (95.41%), Query Frame = 1
Query:    1 RGITINTAHVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISSEPNLKKGDNKWVDKIYNLMESIDNYIPTPIRDVDKTFLMAIEDVFSITGRGTVATGKIDRGVVKVGETVELVGLGATK*TTVTGVEMFQKNL 654
            RGITINTAHVEYETE+RHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILL+KQVGVP +VVFLNKEDQVDD+EL+ELVELEVRELLSNYDFPGDDIPIV+GSAL AL+A+   P+++KG++KWVDKI++LM+++D+YIPTP RDVDKTFLMA+EDVFSITGRGTVATG+I+RG+VKVGET+E+VGL  T+ TT+TG+EMFQK L
Sbjct:   59 RGITINTAHVEYETETRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLAKQVGVPTLVVFLNKEDQVDDVELLELVELEVRELLSNYDFPGDDIPIVSGSALLALEAVIKNPSIQKGEDKWVDKIFSLMDAVDDYIPTPERDVDKTFLMAVEDVFSITGRGTVATGRIERGIVKVGETIEIVGLRDTQTTTITGLEMFQKTL 276          
BLAST of mRNA_S-dermatodea_contig87426.16887.1 vs. uniprot
Match: B3SR00_9RHOD (Elongation factor Tu (Fragment) n=3 Tax=Rhodophyta TaxID=2763 RepID=B3SR00_9RHOD)

HSP 1 Score: 365 bits (938), Expect = 1.100e-125
Identity = 176/218 (80.73%), Postives = 203/218 (93.12%), Query Frame = 1
Query:    1 RGITINTAHVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISSEPNLKKGDNKWVDKIYNLMESIDNYIPTPIRDVDKTFLMAIEDVFSITGRGTVATGKIDRGVVKVGETVELVGLGATK*TTVTGVEMFQKNL 654
            RGITINTAHVEYETE RHYAHVDCPGHADYVKNMITGAAQMDGAILV+SAADGPMPQTREHILL+KQVGVP+IVVFLNKEDQVDD EL+ELVELE RELLS YDFPGDDIP V+GSAL AL+A+S+ P +K+G++KWVDKI  LM+++DNY+PTP RDVDKTFLMA+EDVFSITGRGTVATG+I+RG+VKVG+++E+VGL  T+ TT+TG+EMFQK L
Sbjct:   13 RGITINTAHVEYETEERHYAHVDCPGHADYVKNMITGAAQMDGAILVISAADGPMPQTREHILLAKQVGVPNIVVFLNKEDQVDDAELLELVELEARELLSQYDFPGDDIPFVSGSALLALEAVSANPKIKRGEDKWVDKILALMDAVDNYVPTPERDVDKTFLMAVEDVFSITGRGTVATGRIERGIVKVGDSIEIVGLRDTQTTTITGLEMFQKTL 230          
BLAST of mRNA_S-dermatodea_contig87426.16887.1 vs. uniprot
Match: A0A6P1AKF6_9CYAN (Elongation factor Tu n=1 Tax=Kamptonema sp. SIO1D9 TaxID=2607808 RepID=A0A6P1AKF6_9CYAN)

HSP 1 Score: 370 bits (949), Expect = 1.320e-125
Identity = 181/218 (83.03%), Postives = 203/218 (93.12%), Query Frame = 1
Query:    1 RGITINTAHVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISSEPNLKKGDNKWVDKIYNLMESIDNYIPTPIRDVDKTFLMAIEDVFSITGRGTVATGKIDRGVVKVGETVELVGLGATK*TTVTGVEMFQKNL 654
            RGITINTAHVEY+T++RHYAHVDCPGHADYVKNMITGAAQMDG ILVVSAADGPMPQTREHILL+KQVGVP +VVFLNK+DQVDD EL+ELVELEVRELLS+YDFPGDDIP+V GSAL AL+A++ +PN+KKGDN+WVDKIY LM+++D YIPTP RDVDK FLMA+EDVFSITGRGTVATG+I+RG VKVGETVELVG+  TK TTVTGVEMFQK L
Sbjct:   59 RGITINTAHVEYQTDNRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAADGPMPQTREHILLAKQVGVPSLVVFLNKQDQVDDEELLELVELEVRELLSSYDFPGDDIPVVAGSALLALEALTKDPNIKKGDNEWVDKIYELMDNVDEYIPTPERDVDKPFLMAVEDVFSITGRGTVATGRIERGKVKVGETVELVGIKDTKSTTVTGVEMFQKTL 276          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig87426.16887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S6ZPC8_9STRA3.380e-13388.99Elongation factor Tu, chloroplastic n=2 Tax=Strame... [more]
A0A7S4KCX9_9STRA1.860e-12985.25Hypothetical protein n=2 Tax=Bacillariophyta TaxID... [more]
A0A516ZAG0_9STRA1.220e-12884.40Elongation factor Tu, chloroplastic n=4 Tax=Dictyo... [more]
B0M2B5_9STRA5.750e-12883.94Elongation factor Tu (Fragment) n=1 Tax=Chattonell... [more]
Q8HUC5_SKECO1.930e-12783.94Elongation factor Tu (Fragment) n=1 Tax=Skeletonem... [more]
C6KIM9_AURAN1.620e-12683.03Elongation factor Tu, chloroplastic n=4 Tax=Pelago... [more]
B2XTC8_HETAK2.220e-12683.94Elongation factor Tu, chloroplastic n=4 Tax=Hetero... [more]
A0A1X9PTY9_9RHOD2.300e-12682.57Elongation factor Tu, chloroplastic n=2 Tax=Rhodel... [more]
B3SR00_9RHOD1.100e-12580.73Elongation factor Tu (Fragment) n=3 Tax=Rhodophyta... [more]
A0A6P1AKF6_9CYAN1.320e-12583.03Elongation factor Tu n=1 Tax=Kamptonema sp. SIO1D9... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig87426contigS-dermatodea_contig87426:1..654 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score320.5
Seed ortholog evalue4.9e-85
Seed eggNOG ortholog2880.D1J725
Preferred nametufA
KEGG koko:K02358
GOsGO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0009295,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009941,GO:0016020,GO:0020011,GO:0031967,GO:0031974,GO:0031975,GO:0031976,GO:0031981,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0048046,GO:0055035,GO:0070013
EggNOG free text desc.translation elongation factor activity
EggNOG OGsCOG0050@1,KOG0460@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012,ko03029,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size654
Cds size516
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig87426.16887.1prot_S-dermatodea_contig87426.16887.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig87426 40..555 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925363.4417477-UTR-S-dermatodea_contig87426:0..391622925363.4417477-UTR-S-dermatodea_contig87426:0..39Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig87426 1..39 -
1694079882.7332819-UTR-S-dermatodea_contig87426:0..391694079882.7332819-UTR-S-dermatodea_contig87426:0..39Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig87426 1..39 -
1622925363.4673183-UTR-S-dermatodea_contig87426:555..6541622925363.4673183-UTR-S-dermatodea_contig87426:555..654Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig87426 556..654 -
1694079882.7583828-UTR-S-dermatodea_contig87426:555..6541694079882.7583828-UTR-S-dermatodea_contig87426:555..654Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig87426 556..654 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925363.4573615-CDS-S-dermatodea_contig87426:39..5551622925363.4573615-CDS-S-dermatodea_contig87426:39..555Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig87426 40..555 -
1694079882.7487388-CDS-S-dermatodea_contig87426:39..5551694079882.7487388-CDS-S-dermatodea_contig87426:39..555Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig87426 40..555 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig87426.16887.1

>prot_S-dermatodea_contig87426.16887.1 ID=prot_S-dermatodea_contig87426.16887.1|Name=mRNA_S-dermatodea_contig87426.16887.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=172bp
MITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVPHIVVFLNKEDQV
DDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISSEPNLKKG
DNKWVDKIYNLMESIDNYIPTPIRDVDKTFLMAIEDVFSITGRGTVATGK
IDRGVVKVGETVELVGLGATK*
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mRNA from alignment at S-dermatodea_contig87426:1..654-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig87426.16887.1 ID=mRNA_S-dermatodea_contig87426.16887.1|Name=mRNA_S-dermatodea_contig87426.16887.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=654bp|location=Sequence derived from alignment at S-dermatodea_contig87426:1..654- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGAGGAATTACTATAAATACAGCACACGTGGAATATGAGACAGAAAGTCG TCATTATGCACATGTTGATTGTCCCGGTCATGCGGACTATGTCAAAAATA TGATTACTGGTGCTGCTCAAATGGATGGTGCTATTTTAGTTGTTTCTGCT GCTGATGGTCCTATGCCTCAAACACGTGAGCATATTCTATTATCGAAGCA AGTTGGAGTACCCCATATAGTTGTCTTTTTAAATAAAGAAGATCAAGTCG ATGATTTAGAGTTAGTTGAATTAGTTGAATTAGAAGTAAGAGAATTACTG TCGAATTATGATTTTCCTGGCGACGATATACCAATAGTGACAGGTTCAGC TTTACAAGCTTTGGATGCCATATCTAGTGAACCTAATTTAAAAAAAGGTG ACAATAAATGGGTTGATAAAATTTATAATTTAATGGAATCTATAGATAAT TATATCCCAACTCCAATTAGAGATGTTGATAAAACATTTCTAATGGCAAT TGAAGATGTTTTTTCTATTACTGGACGTGGTACTGTAGCAACTGGCAAAA TTGATCGTGGAGTTGTAAAAGTAGGCGAAACAGTTGAGCTAGTTGGCTTA GGAGCGACCAAATAAACAACAGTAACTGGAGTTGAGATGTTCCAAAAAAA TTTA
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Coding sequence (CDS) from alignment at S-dermatodea_contig87426:1..654-

>mRNA_S-dermatodea_contig87426.16887.1 ID=mRNA_S-dermatodea_contig87426.16887.1|Name=mRNA_S-dermatodea_contig87426.16887.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1032bp|location=Sequence derived from alignment at S-dermatodea_contig87426:1..654- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATTACTGGTGCTGCTCAAATGGATGGTGCTATTTTAGTTGTTTCTGC
TGCTGATGGTCCTATGCCTCAAACACGTGAGCATATTCTATTATCGAAGC
AAGTTGGAGTACCCCATATAGTTGTCTTTTTAAATAAAGAAGATCAAGTC
GATGATTTAGAGTTAGTTGAATTAGTTGAATTAGAAGTAAGAGAATTACT
GTCGAATTATGATTTTCCTGGCGACGATATACCAATAGTGACAGGTTCAG
CTTTACAAGCTTTGGATGCCATATCTAGTGAACCTAATTTAAAAAAAGGT
GACAATAAATGGGTTGATAAAATTTATAATTTAATGGAATCTATAGATAA
TTATATCCCAACTCCAATTAGAGATGTTGATAAAACATTTCTAATGGCAA
TTGAAGATGTTTTTTCTATTACTGGACGTGGTACTGTAGCAACTGGCAAA
ATTGATCGTGGAGTTGTAAAAGTAGGCGAAACAGTTGAGCTAGTTGGCTT
AGGAGCGACCAAATAAATGATTACTGGTGCTGCTCAAATGGATGGTGCTA
TTTTAGTTGTTTCTGCTGCTGATGGTCCTATGCCTCAAACACGTGAGCAT
ATTCTATTATCGAAGCAAGTTGGAGTACCCCATATAGTTGTCTTTTTAAA
TAAAGAAGATCAAGTCGATGATTTAGAGTTAGTTGAATTAGTTGAATTAG
AAGTAAGAGAATTACTGTCGAATTATGATTTTCCTGGCGACGATATACCA
ATAGTGACAGGTTCAGCTTTACAAGCTTTGGATGCCATATCTAGTGAACC
TAATTTAAAAAAAGGTGACAATAAATGGGTTGATAAAATTTATAATTTAA
TGGAATCTATAGATAATTATATCCCAACTCCAATTAGAGATGTTGATAAA
ACATTTCTAATGGCAATTGAAGATGTTTTTTCTATTACTGGACGTGGTAC
TGTAGCAACTGGCAAAATTGATCGTGGAGTTGTAAAAGTAGGCGAAACAG
TTGAGCTAGTTGGCTTAGGAGCGACCAAATAA
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