mRNA_S-dermatodea_contig8742.16886.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig8742.16886.1 vs. uniprot
Match: D8LGY1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGY1_ECTSI) HSP 1 Score: 488 bits (1257), Expect = 1.290e-163 Identity = 260/394 (65.99%), Postives = 302/394 (76.65%), Query Frame = 2
Query: 380 RTAAAEPNTLQSFKRNLGTGVLLRPRQDKAYRETR-QKTRQSAQQARSRAHAPRTQGLPGH---LWKVWRGLMALEGWCEASWGGRACAHVVAGALASSHSLVGSIVVGLAVWVSCAKRLGENACGKDGWKQVARITAEVAVLWYCHAMPHGLGAGRPLRGNFGSGKAGDLLGAIWHFLGQGAFIRLVAASGRLVGINVLEANGLLLGISCFGNEIAGSRMRHVVKGSAA----------EVCTYQLRGFFSRTDGIFGEKLILSLPFDVADTFLALQGILSATEREVVRKNGVLATAFREFASQPANTLDAHSLGALGARNLMGMGFVRARVRMFGRPALSLGWTEKASNMCLVGDPICGSLLQKILDPTCVMLKGRGHIYEAYIAGVSCLTN 1519
R A A+ + R G G R R+D A + +TR+ + R++A R++ H R L+A GWCEA+ G+A HVVAGALASSHS+V VVGLAVW SCAKRL +D WKQVARIT EVA++WYCHA+PHGLGAGRPLRGNFG+GKAGDLLGA+WHFLGQG FIRLVAASGR+V +NVLEANG+LLG+S GN +AGSRMR VV +A E YQLRGFFSRT+GIFGE+ ILS+PFD ADT LALQGILSATEREVV+KNGVLA+AFR+FA+Q ANTLDAHSLGA+GARNLMGMGF+ ARVRMFGRPALSLGWTEKA+NMC+ GDPICGSLLQK+LDPTCVMLKGRGH Y+AY+A V+CL N
Sbjct: 179 RAATADRIPPTTASRRFGPGACARRRRDVAAGASPPSRTRRPGRIGRAKARLKRSRRSGAHGLVSTGACRSLVAPGGWCEATSVGKATVHVVAGALASSHSVVAGFVVGLAVWASCAKRL---TGAEDDWKQVARITIEVAIMWYCHALPHGLGAGRPLRGNFGTGKAGDLLGAMWHFLGQGTFIRLVAASGRVVSLNVLEANGILLGLSHLGNGLAGSRMRRVVGATAXXXXXXXXXXXEAHAYQLRGFFSRTNGIFGERPILSMPFDTADTLLALQGILSATEREVVQKNGVLASAFRDFAAQSANTLDAHSLGAVGARNLMGMGFIAARVRMFGRPALSLGWTEKATNMCMEGDPICGSLLQKLLDPTCVMLKGRGHFYDAYVACVACLAN 569
BLAST of mRNA_S-dermatodea_contig8742.16886.1 vs. uniprot
Match: A0A835ZF00_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF00_9STRA) HSP 1 Score: 273 bits (698), Expect = 2.160e-78 Identity = 153/316 (48.42%), Postives = 193/316 (61.08%), Query Frame = 2
Query: 572 WRGLMALEGWCEASWGGRACAHVVAGALASSHSLVGSIVVGLAVWVSCAKRLGENACGKDGWKQVARITAEVAVLWYCHAMPHGLGAGRPLRGNFGSGKAGDLLGAIWHFLGQGAFIRLVAASGRLVGINVLEANGLLLGISCFGNEIAGSRMRHV-VKGSAAEVCTYQLRGFFSRTDGIFGEKLILSLPFDVADTFLALQGILSATEREVVRKNGVLATAFREFASQPANTLDAHSLGALGARNLMGMGFVRARVRMFGRPALSLGWTEKASNMCLVGDPICGSLLQKILDPTCVMLKGRGHIYEAYIAGVSCLT 1516
W E ++W R + V+ LAS+ L+ S+VVG AV VSCA A G+ W+Q AR+T EVA+L Y H +P GLG LR + + + L GA H+ GQ VAA+ R V +N+ EAN LLLG S GN AGSR+ + + G + + YQLRGFF RT G+F + +LSLPFD DT L QGILSATERE+ + AFR +A P + LDAHSLG LGARNL GMG V A VR+F RP +SLGWT S++C+VGDPICGS L K+LDPTC +L G GHIY Y+ + T
Sbjct: 450 WSDYWFAEQLLRSAWPVRIVSDVLLSTLASASPLLASVVVGAAVCVSCA------AAGEH-WQQAARVTVEVAILRYLHCLPCGLGVAAELREHTCARQLQPLAGAALHYAGQRGCAVAVAAAARRVRLNLFEANALLLGASHVGNACAGSRLWCLDLGGGSDDAVGYQLRGFFCRTRGVFAARRVLSLPFDCVDTVLGCQGILSATERELACTTSAVGEAFRAWAGAPLSVLDAHSLGTLGARNLKGMGLVAAPVRLFARPFMSLGWTHGTSSICMVGDPICGSFLAKLLDPTCCLLPGSGHIYSKYLTSWAAAT 758
BLAST of mRNA_S-dermatodea_contig8742.16886.1 vs. uniprot
Match: A0A7S1XTN3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XTN3_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 1.860e-16 Identity = 62/151 (41.06%), Postives = 76/151 (50.33%), Query Frame = 2
Query: 983 LLGISCFGNEIAGSRMRHVVKGSAAEVCTYQLRGFFSRTDGIFGEKL--------------ILSLPFDVADTFLALQGILSATEREVVRKNGVLATAFREFASQPANTLDAHSLGALGARNLMGMGFV---RARVRMFGRPALSLGWTEKA 1384
LL S GN G R+R G ++LRGFF R GI E +LSLPFDVAD L LQGILSATE +V+R LA R + A + AHSLGALGARNL G + R+ + +P +S+GW A
Sbjct: 2 LLATSFVGNLCVGGRLRRDATGEH-----FELRGFFCRLRGICDEAFWAPVLGPASTCIAAVLSLPFDVADLLLNLQGILSATELDVLRGGSQLARDLRAGGGEEAVHVYAHSLGALGARNLATAGALAGENVRLWLLAQPWISVGWLAAA 147 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8742.16886.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig8742.16886.1 >prot_S-dermatodea_contig8742.16886.1 ID=prot_S-dermatodea_contig8742.16886.1|Name=mRNA_S-dermatodea_contig8742.16886.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=472bp MMLQGLAIIPQRKNTAGLCSGLPSAQRKARRRQTKELRVVRGAAPPPPCDback to top mRNA from alignment at S-dermatodea_contig8742:2700..8156- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig8742.16886.1 ID=mRNA_S-dermatodea_contig8742.16886.1|Name=mRNA_S-dermatodea_contig8742.16886.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5457bp|location=Sequence derived from alignment at S-dermatodea_contig8742:2700..8156- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig8742:2700..8156- >mRNA_S-dermatodea_contig8742.16886.1 ID=mRNA_S-dermatodea_contig8742.16886.1|Name=mRNA_S-dermatodea_contig8742.16886.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2832bp|location=Sequence derived from alignment at S-dermatodea_contig8742:2700..8156- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |