mRNA_S-dermatodea_contig8739.16884.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8739.16884.1
Unique NamemRNA_S-dermatodea_contig8739.16884.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8739.16884.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8739contigS-dermatodea_contig8739:5584..6190 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size607
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8739.16884.1prot_S-dermatodea_contig8739.16884.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8739 5689..6015 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925363.1033463-UTR-S-dermatodea_contig8739:5583..56881622925363.1033463-UTR-S-dermatodea_contig8739:5583..5688Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8739 5584..5688 +
1694079882.4623349-UTR-S-dermatodea_contig8739:5583..56881694079882.4623349-UTR-S-dermatodea_contig8739:5583..5688Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8739 5584..5688 +
1622925363.1286206-UTR-S-dermatodea_contig8739:6015..61901622925363.1286206-UTR-S-dermatodea_contig8739:6015..6190Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8739 6016..6190 +
1694079882.4865046-UTR-S-dermatodea_contig8739:6015..61901694079882.4865046-UTR-S-dermatodea_contig8739:6015..6190Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8739 6016..6190 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925363.1143665-CDS-S-dermatodea_contig8739:5688..60151622925363.1143665-CDS-S-dermatodea_contig8739:5688..6015Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8739 5689..6015 +
1694079882.4733238-CDS-S-dermatodea_contig8739:5688..60151694079882.4733238-CDS-S-dermatodea_contig8739:5688..6015Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8739 5689..6015 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8739.16884.1

>prot_S-dermatodea_contig8739.16884.1 ID=prot_S-dermatodea_contig8739.16884.1|Name=mRNA_S-dermatodea_contig8739.16884.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=109bp
MTRSCIPDGLYRPVHGLETGYPMYITRSGIYRTVLTGQWTASKKGYDVQS
KRSLYSGRSLPVSRWPPNRVHDVYYAYVVRVYPGRPLLVGRGIPKRVRLT
IHIRSSGI*
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mRNA from alignment at S-dermatodea_contig8739:5584..6190+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8739.16884.1 ID=mRNA_S-dermatodea_contig8739.16884.1|Name=mRNA_S-dermatodea_contig8739.16884.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=607bp|location=Sequence derived from alignment at S-dermatodea_contig8739:5584..6190+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTTCCCCCGCCCACACAAAATGACAAACGCGAGCGTAAAAACACGAGGCA
TCCCCACGAGTAATCTAGACTACACAACATACGCCAAACAGAGGCTACGA
TATACATGACGCGTTCCTGCATACCGGACGGACTCTACAGGCCAGTCCAC
GGCCTCGAGACTGGGTACCCGATGTACATCACGCGTTCTGGTATATACCG
GACTGTTCTTACAGGCCAATGGACGGCCTCCAAAAAAGGGTACGATGTAC
AGAGTAAGCGTTCCCTGTATTCCGGACGGTCCCTACCGGTCAGTCGATGG
CCTCCGAACCGGGTACACGATGTATACTACGCGTATGTAGTTCGGGTATA
TCCCGGACGGCCCCTATTGGTCGGTCGAGGGATTCCAAAAAGGGTACGAT
TAACAATACACATACGTAGTTCCGGTATATAGGTCGAGGGATTCCAAAAA
GGGTACGATTAACAATACACATACGTAGTTCCGGTATATACCGGGTGGTT
CCTACAGGCCAGTCGGCGGCGGAACGTCTTCGTCGTCGGTCGGCCAGACC
GAGGCGCCATCCGCAAGCTCCCCTGGCAAGCCCGAAAATATATCCTCCAC
TCCCAGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig8739:5584..6190+

>mRNA_S-dermatodea_contig8739.16884.1 ID=mRNA_S-dermatodea_contig8739.16884.1|Name=mRNA_S-dermatodea_contig8739.16884.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at S-dermatodea_contig8739:5584..6190+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACGCGTTCCTGCATACCGGACGGACTCTACAGGCCAGTCCACGGCCT
CGAGACTGGGTACCCGATGTACATCACGCGTTCTGGTATATACCGGACTG
TTCTTACAGGCCAATGGACGGCCTCCAAAAAAGGGTACGATGTACAGAGT
AAGCGTTCCCTGTATTCCGGACGGTCCCTACCGGTCAGTCGATGGCCTCC
GAACCGGGTACACGATGTATACTACGCGTATGTAGTTCGGGTATATCCCG
GACGGCCCCTATTGGTCGGTCGAGGGATTCCAAAAAGGGTACGATTAACA
ATACACATACGTAGTTCCGGTATATAGATGACGCGTTCCTGCATACCGGA
CGGACTCTACAGGCCAGTCCACGGCCTCGAGACTGGGTACCCGATGTACA
TCACGCGTTCTGGTATATACCGGACTGTTCTTACAGGCCAATGGACGGCC
TCCAAAAAAGGGTACGATGTACAGAGTAAGCGTTCCCTGTATTCCGGACG
GTCCCTACCGGTCAGTCGATGGCCTCCGAACCGGGTACACGATGTATACT
ACGCGTATGTAGTTCGGGTATATCCCGGACGGCCCCTATTGGTCGGTCGA
GGGATTCCAAAAAGGGTACGATTAACAATACACATACGTAGTTCCGGTAT
ATAG
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