mRNA_S-dermatodea_contig8737.16881.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8737.16881.1
Unique NamemRNA_S-dermatodea_contig8737.16881.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8737.16881.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8737contigS-dermatodea_contig8737:3270..4229 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size962
Cds size960
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925362.9984229-CDS-S-dermatodea_contig8737:3269..42291622925362.9984229-CDS-S-dermatodea_contig8737:3269..4229Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8737 3270..4229 +
1694079882.392888-CDS-S-dermatodea_contig8737:3269..42291694079882.392888-CDS-S-dermatodea_contig8737:3269..4229Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8737 3270..4229 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8737.16881.1prot_S-dermatodea_contig8737.16881.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8737 3270..4229 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8737.16881.1

>prot_S-dermatodea_contig8737.16881.1 ID=prot_S-dermatodea_contig8737.16881.1|Name=mRNA_S-dermatodea_contig8737.16881.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=320bp
GVGSGCTCLTETWVSERFAWIDLQAGPFEWGAAAGDGGYKSAASGLLPRH
LQRGILPARPGSAGGGRRDGDYVRALENLRGKVSARISRLAALKVHMSCG
DEEENKMAGTRRGDSRRLGVAAVACEEVSSQLAFLRRFQTREGEVVSNAD
AAAAAEGVAPDGRGKIDKSEEFTNSFRAFQRSHIALLHEVLEELAPATES
DSPSASLRSEAAGLGAEQQAVLSRLAALVSSLQRSVITPASTLPLPALPP
PKEPRNSTRPRNPNGDNHAVSPSNLYGDLSGCGTSSACAETRSYSLYKLP
TGPALVSQAQAGGVGPTTAA
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mRNA from alignment at S-dermatodea_contig8737:3270..4229+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8737.16881.1 ID=mRNA_S-dermatodea_contig8737.16881.1|Name=mRNA_S-dermatodea_contig8737.16881.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=960bp|location=Sequence derived from alignment at S-dermatodea_contig8737:3270..4229+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGTGTTGGCAGCGGATGCACTTGTCTGACGGAGACATGGGTAAGCGAGCG
GTTCGCGTGGATAGACCTTCAGGCAGGACCGTTCGAGTGGGGGGCTGCGG
CCGGGGATGGCGGCTACAAGAGTGCCGCTTCTGGGCTCTTGCCTCGACAT
CTTCAGAGAGGGATCCTACCCGCCCGGCCGGGGAGTGCTGGCGGTGGTCG
ACGAGACGGCGATTACGTGCGCGCATTGGAAAATCTTAGGGGGAAGGTAT
CTGCCAGGATTAGTCGCTTGGCGGCGCTGAAGGTTCACATGTCATGTGGC
GATGAGGAGGAAAACAAAATGGCGGGCACCCGCCGCGGAGATAGTCGTCG
GCTGGGTGTGGCTGCCGTGGCGTGCGAGGAGGTTTCCTCGCAGCTGGCGT
TTCTGCGCCGGTTTCAGACGCGGGAGGGGGAGGTAGTGTCGAACGCAGAT
GCAGCGGCGGCAGCCGAAGGCGTCGCCCCCGATGGCAGGGGCAAAATCGA
CAAAAGCGAAGAATTCACCAACTCGTTTCGTGCGTTCCAACGGTCTCACA
TAGCCCTTCTCCACGAGGTGCTCGAAGAGCTAGCCCCGGCCACCGAGAGC
GACTCGCCATCAGCGTCACTGAGGAGTGAGGCAGCGGGGCTGGGTGCTGA
GCAGCAAGCTGTTCTCTCCAGGCTAGCCGCCCTCGTATCCTCCCTCCAAC
GCAGCGTCATCACCCCGGCGTCCACGCTCCCGCTTCCCGCCCTGCCCCCG
CCGAAGGAGCCTCGTAATTCCACGCGCCCAAGGAACCCGAACGGCGATAA
CCACGCAGTCTCTCCCAGCAATCTCTACGGGGATCTCAGCGGCTGTGGCA
CGTCGAGTGCATGCGCTGAAACGCGGAGCTATTCTCTCTACAAACTCCCG
ACCGGGCCGGCGCTCGTCTCACAGGCCCAAGCTGGTGGTGTTGGGCCAAC
GACGGCAGCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8737:3270..4229+

>mRNA_S-dermatodea_contig8737.16881.1 ID=mRNA_S-dermatodea_contig8737.16881.1|Name=mRNA_S-dermatodea_contig8737.16881.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1920bp|location=Sequence derived from alignment at S-dermatodea_contig8737:3270..4229+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGTGTTGGCAGCGGATGCACTTGTCTGACGGAGACATGGGTAAGCGAGCG
GTTCGCGTGGATAGACCTTCAGGCAGGACCGTTCGAGTGGGGGGCTGCGG
CCGGGGATGGCGGCTACAAGAGTGCCGCTTCTGGGCTCTTGCCTCGACAT
CTTCAGAGAGGGATCCTACCCGCCCGGCCGGGGAGTGCTGGCGGTGGTCG
ACGAGACGGCGATTACGTGCGCGCATTGGAAAATCTTAGGGGGAAGGTAT
CTGCCAGGATTAGTCGCTTGGCGGCGCTGAAGGTTCACATGTCATGTGGC
GATGAGGAGGAAAACAAAATGGCGGGCACCCGCCGCGGAGATAGTCGTCG
GCTGGGTGTGGCTGCCGTGGCGTGCGAGGAGGTTTCCTCGCAGCTGGCGT
TTCTGCGCCGGTTTCAGACGCGGGAGGGGGAGGTAGTGTCGAACGCAGAT
GCAGCGGCGGCAGCCGAAGGCGTCGCCCCCGATGGCAGGGGCAAAATCGA
CAAAAGCGAAGAATTCACCAACTCGTTTCGTGCGTTCCAACGGTCTCACA
TAGCCCTTCTCCACGAGGTGCTCGAAGAGCTAGCCCCGGCCACCGAGAGC
GACTCGCCATCAGCGTCACTGAGGAGTGAGGCAGCGGGGCTGGGTGCTGA
GCAGCAAGCTGTTCTCTCCAGGCTAGCCGCCCTCGTATCCTCCCTCCAAC
GCAGCGTCATCACCCCGGCGTCCACGCTCCCGCTTCCCGCCCTGCCCCCG
CCGAAGGAGCCTCGTAATTCCACGCGCCCAAGGAACCCGAACGGCGATAA
CCACGCAGTCTCTCCCAGCAATCTCTACGGGGATCTCAGCGGCTGTGGCA
CGTCGAGTGCATGCGCTGAAACGCGGAGCTATTCTCTCTACAAACTCCCG
ACCGGGCCGGCGCTCGTCTCACAGGCCCAAGCTGGTGGTGTTGGGCCAAC
GACGGCAGCGGGTGTTGGCAGCGGATGCACTTGTCTGACGGAGACATGGG
TAAGCGAGCGGTTCGCGTGGATAGACCTTCAGGCAGGACCGTTCGAGTGG
GGGGCTGCGGCCGGGGATGGCGGCTACAAGAGTGCCGCTTCTGGGCTCTT
GCCTCGACATCTTCAGAGAGGGATCCTACCCGCCCGGCCGGGGAGTGCTG
GCGGTGGTCGACGAGACGGCGATTACGTGCGCGCATTGGAAAATCTTAGG
GGGAAGGTATCTGCCAGGATTAGTCGCTTGGCGGCGCTGAAGGTTCACAT
GTCATGTGGCGATGAGGAGGAAAACAAAATGGCGGGCACCCGCCGCGGAG
ATAGTCGTCGGCTGGGTGTGGCTGCCGTGGCGTGCGAGGAGGTTTCCTCG
CAGCTGGCGTTTCTGCGCCGGTTTCAGACGCGGGAGGGGGAGGTAGTGTC
GAACGCAGATGCAGCGGCGGCAGCCGAAGGCGTCGCCCCCGATGGCAGGG
GCAAAATCGACAAAAGCGAAGAATTCACCAACTCGTTTCGTGCGTTCCAA
CGGTCTCACATAGCCCTTCTCCACGAGGTGCTCGAAGAGCTAGCCCCGGC
CACCGAGAGCGACTCGCCATCAGCGTCACTGAGGAGTGAGGCAGCGGGGC
TGGGTGCTGAGCAGCAAGCTGTTCTCTCCAGGCTAGCCGCCCTCGTATCC
TCCCTCCAACGCAGCGTCATCACCCCGGCGTCCACGCTCCCGCTTCCCGC
CCTGCCCCCGCCGAAGGAGCCTCGTAATTCCACGCGCCCAAGGAACCCGA
ACGGCGATAACCACGCAGTCTCTCCCAGCAATCTCTACGGGGATCTCAGC
GGCTGTGGCACGTCGAGTGCATGCGCTGAAACGCGGAGCTATTCTCTCTA
CAAACTCCCGACCGGGCCGGCGCTCGTCTCACAGGCCCAAGCTGGTGGTG
TTGGGCCAACGACGGCAGCG
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