mRNA_S-dermatodea_contig8737.16882.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8737.16882.1
Unique NamemRNA_S-dermatodea_contig8737.16882.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8737.16882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8737contigS-dermatodea_contig8737:4629..8453 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size399
Cds size399
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8737.16882.1prot_S-dermatodea_contig8737.16882.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8737 4629..8453 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925362.9426353-CDS-S-dermatodea_contig8737:4628..47231622925362.9426353-CDS-S-dermatodea_contig8737:4628..4723Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8737 4629..4723 +
1694079882.3534124-CDS-S-dermatodea_contig8737:4628..47231694079882.3534124-CDS-S-dermatodea_contig8737:4628..4723Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8737 4629..4723 +
1622925362.9566793-CDS-S-dermatodea_contig8737:6537..66701622925362.9566793-CDS-S-dermatodea_contig8737:6537..6670Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8737 6538..6670 +
1694079882.367683-CDS-S-dermatodea_contig8737:6537..66701694079882.367683-CDS-S-dermatodea_contig8737:6537..6670Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8737 6538..6670 +
1622925362.9676864-CDS-S-dermatodea_contig8737:8282..84531622925362.9676864-CDS-S-dermatodea_contig8737:8282..8453Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8737 8283..8453 +
1694079882.3781273-CDS-S-dermatodea_contig8737:8282..84531694079882.3781273-CDS-S-dermatodea_contig8737:8282..8453Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8737 8283..8453 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8737.16882.1

>prot_S-dermatodea_contig8737.16882.1 ID=prot_S-dermatodea_contig8737.16882.1|Name=mRNA_S-dermatodea_contig8737.16882.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=133bp
MLQVDTATDPVIAAALAGAKRESSVDVVTADGVLMVDRRVYIDSASLHHQ
LNGRPDEDAKEAVGGAEEDARRFTKHITIWLFSLAGAESVYVDEKWRARA
VGGDTVVVAQSEPRRGRAPPLTCGGRAVSSCV*
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mRNA from alignment at S-dermatodea_contig8737:4629..8453+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8737.16882.1 ID=mRNA_S-dermatodea_contig8737.16882.1|Name=mRNA_S-dermatodea_contig8737.16882.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3825bp|location=Sequence derived from alignment at S-dermatodea_contig8737:4629..8453+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTCCAGGTGGACACGGCGACGGATCCCGTGATCGCGGCGGCGCTCGC
GGGGGCAAAGAGAGAGTCCTCCGTCGATGTCGTCACGGCCGATGGGTGAG
CAACGCTAGGGTTGGTTACGATCTGGTGTGTAACCTATCGATTTTAGGGT
TTGGTGAGGCACCGTAGTAACAGTTCACACAGTTTCGGCCTACCTTGTCA
TACATACGTTTACGTTTCGGCCTTTCCTTGTGCGACAACGCGGCCTGTGA
AGCCGGCCCTTGCTTGGAATAGGATTGTTCGCTTAGTCTCCGCGCTCAGG
AACTGGCGTGTCTGTTCTGCTGTTGTCACCCCCATTTAGGCTCCCCTCGA
TTCGGCCTCGTCTCATTTGGATTATGTACTACGTACCCTGAGCTTCTGAG
CTCTAAAGTAGCGACATCCCTGAAACTCGAAAAATATGTTTGTCATGTTC
AAGTCCCAAAGCTGTCTATTCTTATTTTCTGTTTGAGTGTCTGCGCACTG
TCTTTTTTTTTTTACTTTATTCCCCCATGGTTTTCTTACAGTTTTGTTCG
TTGTCCTTCCTCAAGCGGGTGGGTGTTTCCGACTTTAATTCGTTTTTGTT
TTCGCGGTTACTATTTCCGGTTTATGTCCTTGGCTCAATTTATCATTGCG
ACCGTTAATGCAAGAAAAACGGTGAAAAAAAGCAACACCCCTTCGTGGAG
TTGTGTGCACCCTTTTATATTCCGCTGCCTGACCCGTTTACCCTCGAATG
TCTGCTCCGTCGTTGATTTGTCTCGGTCGGTATCAGCTCTAGAGCACTGT
TGATTGATTGATATATTGATTGATTGATTGATTGAGTATCACATTTACAA
CAGACCGGACCGCCAACGCTTGCCGATCCGGCTTGTGGTCGGATGAGAAA
TCGAAAAATCGAAAAATATCGAAAAATATCGAAAAACCTTTACGGAATTA
CCTTTGAAGCATAATACATAAGGAATAATTAACACATACAAGTATAAACG
CTCGGAATCAGAGGGAACAAACTACCTCGGAACAACTTGGGGTCTGCTAA
AAGAAAAGGAAACCACCCCGCTCTCCTATAGGAAGGGCCCATCACACCCA
CAATACTAATGTCCTAACCAAGTTTGGCAACCTTAACGCAACTAACGTAT
AGACAACGCGCACCGTGCATCTCGAGCGCACTATATTAGTTGTCTGCTCT
CGCCTTGCTATTTATTAACGTGCATCAGAATTCGTGGCGAACAGCTAGCT
CTGCACGATAGTAACCCGCCACCATCTTTGTTATCGTCGTTATCCCCAAT
GGTGGGTTCTAGAGGTCACATGACACTGTCGCCTCAGCGGCGTGGTTCTT
GCCCTGAAGTGGCGCCGCAAGGATCACCTTTGTGTGCAGTCGCCGCCGCT
GTGTTGTACGGATTCCCATCGTACTTAGATCTCAACACCCGATGGCTATA
CATTACTGTAGTGCATTGTACATTACTGTAGTGTAGTGTAGAGTTTAGTA
CAGTGTAGTGCAATGTACCTTACTGTAGTATAGTGTAGTGTACATTACCG
CAGTGCAGAGTTTTCTAGAAGAAAAACCGAAACTGATGGTTCCGTATAAC
ACCCTTGGGGCCATTGGTGGCTTGCCAACAACTCAACACTTGGATCTGTT
AACTACGCTCCATCGCAATGGTTGTCTTTCGCGGCTTGTTACCGCTATAA
GTGCAACCCTTGCTCGCGTCCCAGCCCTTCGGGCGGTCCGAACCTTCCGG
TACTCCCGAGAGCAAGGTTTCCTAACACGCCTCTGGCAAATTCCGACGGG
TACTTGAATCGTTGAGTCTCGACAAAACAATCGCCAACGCGCATTATCCC
TGCCTTCCTTCAATCCTCCCGCCTCGTCCTCGCAACCCCTCCTGCGTTGA
GCCTGCCAGGGTGCTCATGGTCGATAGAAGAGTTTACATCGATTCCGCAA
GCCTTCACCACCAGCTCAATGGTCGCCCGGACGAAGACGCGAAGGAAGCC
GTCGGTGGGGCAGAGGAGGATGCTCGGAGATTCACGAAACATGTGGGTGG
CCGCGGTGTGCCGGTGGTCTTCCGTGTAATTAGTTAGAGCGATTTTTTAC
TACGCCACGCATTATTTTGCTGCTGCGAAGGCGTGTTGAGGTCGCGACAA
GTGTGTGTTGGGATGCTGGGTAGCCCAACCTTAACTCTAACCCTAACCCT
AACTCTAACCCAACCCCGTAGCTACGCCTGACCATAAACGCGAGGCCCTG
GCCTTAAAGCCGAGGTCTGTACAGCAGCCGCCCAAATGCGGCTGCGCCGC
GCCTGAGCCAAATTGGCAAGCGCACGAGCGAACCATCACAGGAGTCTTAT
TTGGCCAACGACAGGCTTAGCCAACCTTTCCGTGGACGTTTTCTAATAAC
GTGGCAATCGCCACTGGGTGTGCGTTGCTCTCGAAGGAAGATCCTCTTAC
CTTGGGACACACATTGTGTGGCGTCGCTCATGTTAATGTAGTGGTGGTGT
CGCGTCGTGTCCTTGGTGGTGACAAAATTTGAGGAAATGGAAATGGTTTG
ATTGATTGATTGATTGATTGATTGATTGAATAGCACATGTACGACTGACT
GGGTTAATCCGACCCGACTTGTGGCAAGAAGCTATTATATAGAATATAGT
ATACCGAAGAGTCAAGGAGAAAAAAATCAATCTGAACTCTACTCCCACAA
ATAAACAGAACACCGTCCCTGGTACTTGCTGTAGCACAAGAAAGAAGAAG
AGAAACCCCAGATGTATACTATTAATAGTATAGAAAATGCCAGAAGAGGA
ATCGAAATCGGACAGTGGACCATGCTCCCTCGCCTCTAACCCAGGTTCTT
ATTGTGGCGGGGTCAAAATTTGCCGCGCAGCCCCTCCCTAGCCCGCTTGG
GCTTCGCCCGTACACTCGAAGGGTCGACTGCACACGGCATGTTCAGACGA
GCGAAGTAGGTGTTTTCACATTTGGCTGTAGACTATAGGGCTTAATTCCT
GTCATTACGCCATGCCAACGGTTCGAATGTGAAAGGTTGAAACGCACCCG
ATGAAACTGAAAACGGCCAAAGGTTTAGAAACAGACGACAAGGGAGGTGA
TTCGATCGATCAACAGATTGATTTGTCTCGCACTTCCAACAGATTGGGCT
CATGACGTAGAGCTATATTGTACCAGTGATCAGCTGTTGCGATTCAATGC
GATGCCGAAAGCACTTTCGCGACGGCGTTGTGATCGACTGACGCACGAAC
AACAAACGCATCACCCGAGGCTGCGCGTGACTGGAAAGCTCAAACCCTGC
GTACGCAGTTTGTAAAAAATCCGATCGCTCGGGTATCTATAAAATGACAC
GGGTGTGATCGCATCCTCGCGCCTTTTAGTTTTGTTTTGCACGCCTGCGT
CGTGTCAGCAAGCAGCATATGTCTTGAACCGTGTCTTCTTCGCCGCTAGG
CCTGGGCCTCTAAGCCGTTTTGCCTCTGAGTACCTTCAGGCGGCAACTGC
CCAATGATTCATCCACCGCGTCATAGTTTCAACAAGCATGATCACTACTC
GCGGTTTCGTATGACAGCTCGCGGATGGGGTGCCCAACGCAAGCCACCTC
TGTCCCGCCACCGCCCCGCCACCACCCCCCTCGCTGCAAACGTCCGATCG
CTAGATCACGATATGGTTGTTCAGTCTGGCAGGTGCCGAAAGCGTGTACG
TGGATGAGAAGTGGCGAGCAAGAGCAGTAGGTGGCGACACGGTCGTCGTG
GCCCAGTCTGAACCCAGGCGAGGCCGAGCGCCGCCACTTACTTGCGGCGG
GCGGGCGGTGAGTTCTTGTGTGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig8737:4629..8453+

>mRNA_S-dermatodea_contig8737.16882.1 ID=mRNA_S-dermatodea_contig8737.16882.1|Name=mRNA_S-dermatodea_contig8737.16882.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=798bp|location=Sequence derived from alignment at S-dermatodea_contig8737:4629..8453+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTCCAGGTGGACACGGCGACGGATCCCGTGATCGCGGCGGCGCTCGC
GGGGGCAAAGAGAGAGTCCTCCGTCGATGTCGTCACGGCCGATGGATGCT
CCAGGTGGACACGGCGACGGATCCCGTGATCGCGGCGGCGCTCGCGGGGG
CAAAGAGAGAGTCCTCCGTCGATGTCGTCACGGCCGATGGGGTGCTCATG
GTCGATAGAAGAGTTTACATCGATTCCGCAAGCCTTCACCACCAGCTCAA
TGGTCGCCCGGACGAAGACGCGAAGGAAGCCGTCGGTGGGGCAGAGGAGG
ATGCTCGGAGATTCACGAAACATGGTGCTCATGGTCGATAGAAGAGTTTA
CATCGATTCCGCAAGCCTTCACCACCAGCTCAATGGTCGCCCGGACGAAG
ACGCGAAGGAAGCCGTCGGTGGGGCAGAGGAGGATGCTCGGAGATTCACG
AAACATATCACGATATGGTTGTTCAGTCTGGCAGGTGCCGAAAGCGTGTA
CGTGGATGAGAAGTGGCGAGCAAGAGCAGTAGGTGGCGACACGGTCGTCG
TGGCCCAGTCTGAACCCAGGCGAGGCCGAGCGCCGCCACTTACTTGCGGC
GGGCGGGCGGTGAGTTCTTGTGTGTGAATCACGATATGGTTGTTCAGTCT
GGCAGGTGCCGAAAGCGTGTACGTGGATGAGAAGTGGCGAGCAAGAGCAG
TAGGTGGCGACACGGTCGTCGTGGCCCAGTCTGAACCCAGGCGAGGCCGA
GCGCCGCCACTTACTTGCGGCGGGCGGGCGGTGAGTTCTTGTGTGTGA
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