mRNA_S-dermatodea_contig12762.1688.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12762.1688.1
Unique NamemRNA_S-dermatodea_contig12762.1688.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig12762.1688.1 vs. uniprot
Match: A0A6H5KA14_9PHAE (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA14_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 2.060e-34
Identity = 62/92 (67.39%), Postives = 75/92 (81.52%), Query Frame = 1 
Query:   94 MFISFTIHFVDAGLLREIDLACEPFNLSHAGVNVAKKLKTILIAKGLDPKKCTGITIDNASNMVKAREILAADDDNLILTVPCFCHSLQLTV 369
            MFISFTIHFVD   LR IDLAC PFN++H+G N+AK+LK+IL   GLDPKKCTGIT+DNASNM++A   L A DDN IL + CFCHS+QL++
Sbjct:    1 MFISFTIHFVDGETLRTIDLACRPFNVTHSGENIAKELKSILTDAGLDPKKCTGITMDNASNMIRAGNQLDASDDNNILRLSCFCHSIQLSI 92
[Close]
BLAST of mRNA_S-dermatodea_contig12762.1688.1 vs. uniprot
Match: A0A6P4JJ81_DROKI (zinc finger BED domain-containing protein 1-like n=1 Tax=Drosophila kikkawai TaxID=30033 RepID=A0A6P4JJ81_DROKI)

HSP 1 Score: 61.6 bits (148), Expect = 1.390e-8
Identity = 41/115 (35.65%), Postives = 59/115 (51.30%), Query Frame = 1 
Query:   34 LVDDKYFGGSTDIWTGTNRGMFISFTIHFVDAGL-LREIDLACEPF--NLSHAGVNVAKKLKTILIAKGLDPKKCTGITIDNASNMVKAREILAADDDNLILTVPCFCHSLQLTV 369
            L D K+   ++D WT      +++ T HF+ A   LR   L+ E      SH+  ++A  ++T+L    L   K T +  DNA NM+KA EIL       I  +PCF HS+ LTV
Sbjct:  170 LQDVKHCAITSDCWTSRANECYVTVTCHFITADFELRNAVLSTEKLLDERSHSSESIANSIRTVLEEWSL-LGKVTAMVTDNAKNMIKACEILQ------IRHIPCFAHSINLTV 277
[Close]
BLAST of mRNA_S-dermatodea_contig12762.1688.1 vs. uniprot
Match: UPI001955A70F (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Pimephales promelas TaxID=90988 RepID=UPI001955A70F)

HSP 1 Score: 53.5 bits (127), Expect = 8.940e-6
Identity = 32/113 (28.32%), Postives = 53/113 (46.90%), Query Frame = 1 
Query:   25 TLKLVDDKYFGGSTDIWTGTNRGMFISFTIHFVDAGLLREIDLACEPFNLSHAGVNVAKKLKTILIAKGLDPKKCTGITIDNASNMVKAREILAADDDNLILTVPCFCHSLQL 363
            TL L        + D WT  ++  +++ T H++D  +L    L       SH G N+   L   L   GL  K    +T +NA+NM++A E++       +L + CF H++ L
Sbjct:   34 TLSLTTADRVALTCDGWTSRHQDTYVTITCHYLDDWVLISNVLQTRAMQDSHTGANICALLSDALEEWGLTKKDPIIVTNNNATNMIRAVEMME------LLHIGCFAHTINL 140
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12762.1688.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KA14_9PHAE2.060e-3467.39Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6P4JJ81_DROKI1.390e-835.65zinc finger BED domain-containing protein 1-like n... [more]
UPI001955A70F8.940e-628.32E3 SUMO-protein ligase ZBED1-like n=1 Tax=Pimephal... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12762contigS-dermatodea_contig12762:6455..6823 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score75.1
Seed ortholog evalue2.6e-11
Seed eggNOG ortholog7955.ENSDARP00000061379
EggNOG free text desc.hAT family C-terminal dimerisation region
EggNOG OGs39RW9@33154,3BH13@33208,3D40F@33213,48425@7711,4931H@7742,KOG1121@1,KOG1121@2759
COG Functional cat.L
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size369
Cds size369
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924260.444733-CDS-S-dermatodea_contig12762:6454..68231622924260.444733-CDS-S-dermatodea_contig12762:6454..6823Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12762 6455..6823 -
1694079132.380852-CDS-S-dermatodea_contig12762:6454..68231694079132.380852-CDS-S-dermatodea_contig12762:6454..6823Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12762 6455..6823 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12762.1688.1prot_S-dermatodea_contig12762.1688.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12762 6455..6823 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12762.1688.1

>prot_S-dermatodea_contig12762.1688.1 ID=prot_S-dermatodea_contig12762.1688.1|Name=mRNA_S-dermatodea_contig12762.1688.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=123bp
QQIAARAATLKLVDDKYFGGSTDIWTGTNRGMFISFTIHFVDAGLLREID
LACEPFNLSHAGVNVAKKLKTILIAKGLDPKKCTGITIDNASNMVKAREI
LAADDDNLILTVPCFCHSLQLTV
back to top

mRNA from alignment at S-dermatodea_contig12762:6455..6823-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12762.1688.1 ID=mRNA_S-dermatodea_contig12762.1688.1|Name=mRNA_S-dermatodea_contig12762.1688.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=369bp|location=Sequence derived from alignment at S-dermatodea_contig12762:6455..6823- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAACAGATTGCCGCGCGGGCGGCAACGCTGAAATTGGTGGACGACAAGTA
CTTCGGCGGCTCGACGGATATTTGGACGGGCACCAACAGAGGAATGTTCA
TCTCCTTCACCATCCACTTCGTCGACGCCGGCCTCCTGCGTGAGATCGAC
TTGGCGTGCGAGCCGTTCAACCTGTCACACGCGGGAGTGAACGTCGCGAA
GAAGCTCAAGACCATCCTCATCGCCAAGGGTCTCGACCCCAAGAAGTGCA
CCGGCATCACCATTGACAACGCGTCCAACATGGTCAAGGCTAGAGAGATC
CTCGCTGCAGACGACGACAACCTCATCCTGACGGTTCCGTGCTTCTGCCA
CTCCCTCCAGCTCACGGTC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig12762:6455..6823-

>mRNA_S-dermatodea_contig12762.1688.1 ID=mRNA_S-dermatodea_contig12762.1688.1|Name=mRNA_S-dermatodea_contig12762.1688.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at S-dermatodea_contig12762:6455..6823- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAACAGATTGCCGCGCGGGCGGCAACGCTGAAATTGGTGGACGACAAGTA
CTTCGGCGGCTCGACGGATATTTGGACGGGCACCAACAGAGGAATGTTCA
TCTCCTTCACCATCCACTTCGTCGACGCCGGCCTCCTGCGTGAGATCGAC
TTGGCGTGCGAGCCGTTCAACCTGTCACACGCGGGAGTGAACGTCGCGAA
GAAGCTCAAGACCATCCTCATCGCCAAGGGTCTCGACCCCAAGAAGTGCA
CCGGCATCACCATTGACAACGCGTCCAACATGGTCAAGGCTAGAGAGATC
CTCGCTGCAGACGACGACAACCTCATCCTGACGGTTCCGTGCTTCTGCCA
CTCCCTCCAGCTCACGGTCCAACAGATTGCCGCGCGGGCGGCAACGCTGA
AATTGGTGGACGACAAGTACTTCGGCGGCTCGACGGATATTTGGACGGGC
ACCAACAGAGGAATGTTCATCTCCTTCACCATCCACTTCGTCGACGCCGG
CCTCCTGCGTGAGATCGACTTGGCGTGCGAGCCGTTCAACCTGTCACACG
CGGGAGTGAACGTCGCGAAGAAGCTCAAGACCATCCTCATCGCCAAGGGT
CTCGACCCCAAGAAGTGCACCGGCATCACCATTGACAACGCGTCCAACAT
GGTCAAGGCTAGAGAGATCCTCGCTGCAGACGACGACAACCTCATCCTGA
CGGTTCCGTGCTTCTGCCACTCCCTCCAGCTCACGGTC
back to top