mRNA_S-dermatodea_contig8737.16880.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8737.16880.1
Unique NamemRNA_S-dermatodea_contig8737.16880.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8737.16880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8737contigS-dermatodea_contig8737:1934..3237 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size792
Cds size789
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925362.8954818-CDS-S-dermatodea_contig8737:1933..24401622925362.8954818-CDS-S-dermatodea_contig8737:1933..2440Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8737 1934..2440 +
1694079882.3246884-CDS-S-dermatodea_contig8737:1933..24401694079882.3246884-CDS-S-dermatodea_contig8737:1933..2440Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8737 1934..2440 +
1622925362.9059231-CDS-S-dermatodea_contig8737:2954..32361622925362.9059231-CDS-S-dermatodea_contig8737:2954..3236Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8737 2955..3236 +
1694079882.3370223-CDS-S-dermatodea_contig8737:2954..32361694079882.3370223-CDS-S-dermatodea_contig8737:2954..3236Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8737 2955..3236 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8737.16880.1prot_S-dermatodea_contig8737.16880.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8737 1934..3236 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8737.16880.1

>prot_S-dermatodea_contig8737.16880.1 ID=prot_S-dermatodea_contig8737.16880.1|Name=mRNA_S-dermatodea_contig8737.16880.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=263bp
VVDVHKKVRDALEAHMRTYLRNEQELPGVEPETGQQRPSVAAEDGGRNRH
MYMPTWHMENLLGSLVSALETPSSGLNTEGELPTAFTLFILNPRPAWALP
SAELKDAAGGEATYGYRCGLSASAMAALAADTEVVQRAEVMEREEQVGWR
VVEYRVSDDPLSSGVKDRESPPELSSYRAPKDSTESSLQWALDRLNDIPE
RDTDQGVDSSEESSTHSWSLSQEKAFLLKGGSKVPPTGRARILLRDVLEV
HRRGGGSRGATGG
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mRNA from alignment at S-dermatodea_contig8737:1934..3237+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8737.16880.1 ID=mRNA_S-dermatodea_contig8737.16880.1|Name=mRNA_S-dermatodea_contig8737.16880.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1304bp|location=Sequence derived from alignment at S-dermatodea_contig8737:1934..3237+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTTGTGGACGTCCACAAGAAGGTTAGAGACGCCCTGGAGGCTCACATGCG
CACCTACTTGCGGAACGAGCAAGAGCTGCCGGGTGTCGAACCGGAAACCG
GGCAACAGCGACCGTCAGTGGCTGCGGAAGACGGCGGACGAAACCGACAC
ATGTACATGCCCACCTGGCACATGGAAAACCTTCTGGGCTCCCTAGTGTC
CGCCCTCGAAACACCGTCCTCGGGGCTGAACACGGAAGGCGAGCTCCCCA
CCGCGTTCACGCTCTTCATCTTGAACCCTCGTCCCGCGTGGGCCTTGCCG
AGCGCAGAGTTGAAAGATGCCGCCGGGGGTGAAGCGACTTACGGTTACCG
GTGCGGGTTGTCTGCTAGCGCGATGGCTGCCTTGGCGGCGGACACGGAGG
TGGTGCAGAGGGCAGAGGTTATGGAGCGGGAGGAGCAGGTGGGCTGGCGC
GTGGTGGAGTACAGAGTCAGCGACGACCCCTTGTCATCCGGCGTCAAAGA
TCGCGAGGTATGTGCATGACGCGCCCTTGAAGCTAAATGGCGGCGCAGAC
AGAGGTTTTCGTATGCACGATATTCGTGTGCGTGGAATCTGTCCGGGGGG
AATCCTTCAGTGTCAGTGTGCGCGTGGTTTTGCTCGTTGCTCGTTCGGAG
CACACGGGAGGGGCGAGCTCGAAATTCCAGCACGTCAGCGGGGCCACCGT
GTCCTTTACTCCCGAGTGGTGAAGAGCCTTGCCCAGCTGCAACTTTTGTT
TTGTTTTCGAGGTACATGCGCCCGCCGTGATCGCACTTTCCTCGTAGACT
CTACGTTGTGTGGCGAGGCTTTCGTTCGGCTCCAAGCTCCAGTCTGACCC
CTTTAAGGGGCAAGACGATTCCAACTGCTTTTGAAAAAACTTCCTTCGCG
CAAGCGATCGAAGACCCCAGAGTATCAACCCCGAAGGGAGTAAGTAGACC
AGGCAGAAAACGATCATATATTTTCCGACCCACTACACCGCGTGTTGTTC
TTTCCCTCTGCCTTTCCCCAGTCGCCTCCAGAACTCTCATCGTATCGAGC
GCCTAAGGACAGCACGGAATCTTCCCTGCAGTGGGCCTTGGACCGCCTGA
ACGACATACCGGAACGCGACACGGACCAGGGCGTCGACAGTAGCGAAGAA
TCCTCCACCCACTCCTGGAGCCTGTCGCAGGAAAAAGCTTTCCTGCTGAA
GGGAGGTTCCAAGGTTCCGCCGACAGGCCGAGCTCGAATCCTCTTGCGCG
ATGTGCTCGAGGTGCACAGGCGGGGGGGGGGGTCCCGCGGCGCCACCGGT
GGTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8737:1934..3237+

>mRNA_S-dermatodea_contig8737.16880.1 ID=mRNA_S-dermatodea_contig8737.16880.1|Name=mRNA_S-dermatodea_contig8737.16880.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1578bp|location=Sequence derived from alignment at S-dermatodea_contig8737:1934..3237+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTTGTGGACGTCCACAAGAAGGTTAGAGACGCCCTGGAGGCTCACATGCG
CACCTACTTGCGGAACGAGCAAGAGCTGCCGGGTGTCGAACCGGAAACCG
GGCAACAGCGACCGTCAGTGGCTGCGGAAGACGGCGGACGAAACCGACAC
ATGTACATGCCCACCTGGCACATGGAAAACCTTCTGGGCTCCCTAGTGTC
CGCCCTCGAAACACCGTCCTCGGGGCTGAACACGGAAGGCGAGCTCCCCA
CCGCGTTCACGCTCTTCATCTTGAACCCTCGTCCCGCGTGGGCCTTGCCG
AGCGCAGAGTTGAAAGATGCCGCCGGGGGTGAAGCGACTTACGGTTACCG
GTGCGGGTTGTCTGCTAGCGCGATGGCTGCCTTGGCGGCGGACACGGAGG
TGGTGCAGAGGGCAGAGGTTATGGAGCGGGAGGAGCAGGTGGGCTGGCGC
GTGGTGGAGTACAGAGTCAGCGACGACCCCTTGTCATCCGGCGTCAAAGA
TCGCGAGGTTGTGGACGTCCACAAGAAGGTTAGAGACGCCCTGGAGGCTC
ACATGCGCACCTACTTGCGGAACGAGCAAGAGCTGCCGGGTGTCGAACCG
GAAACCGGGCAACAGCGACCGTCAGTGGCTGCGGAAGACGGCGGACGAAA
CCGACACATGTACATGCCCACCTGGCACATGGAAAACCTTCTGGGCTCCC
TAGTGTCCGCCCTCGAAACACCGTCCTCGGGGCTGAACACGGAAGGCGAG
CTCCCCACCGCGTTCACGCTCTTCATCTTGAACCCTCGTCCCGCGTGGGC
CTTGCCGAGCGCAGAGTTGAAAGATGCCGCCGGGGGTGAAGCGACTTACG
GTTACCGGTGCGGGTTGTCTGCTAGCGCGATGGCTGCCTTGGCGGCGGAC
ACGGAGGTGGTGCAGAGGGCAGAGGTTATGGAGCGGGAGGAGCAGGTGGG
CTGGCGCGTGGTGGAGTACAGAGTCAGCGACGACCCCTTGTCATCCGGCG
TCAAAGATCGCGAGTCGCCTCCAGAACTCTCATCGTATCGAGCGCCTAAG
GACAGCACGGAATCTTCCCTGCAGTGGGCCTTGGACCGCCTGAACGACAT
ACCGGAACGCGACACGGACCAGGGCGTCGACAGTAGCGAAGAATCCTCCA
CCCACTCCTGGAGCCTGTCGCAGGAAAAAGCTTTCCTGCTGAAGGGAGGT
TCCAAGGTTCCGCCGACAGGCCGAGCTCGAATCCTCTTGCGCGATGTGCT
CGAGGTGCACAGGCGGGGGGGGGGGTCCCGCGGCGCCACCGGTGGTTCGC
CTCCAGAACTCTCATCGTATCGAGCGCCTAAGGACAGCACGGAATCTTCC
CTGCAGTGGGCCTTGGACCGCCTGAACGACATACCGGAACGCGACACGGA
CCAGGGCGTCGACAGTAGCGAAGAATCCTCCACCCACTCCTGGAGCCTGT
CGCAGGAAAAAGCTTTCCTGCTGAAGGGAGGTTCCAAGGTTCCGCCGACA
GGCCGAGCTCGAATCCTCTTGCGCGATGTGCTCGAGGTGCACAGGCGGGG
GGGGGGGTCCCGCGGCGCCACCGGTGGT
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