mRNA_S-dermatodea_contig87361.16879.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig87361.16879.1
Unique NamemRNA_S-dermatodea_contig87361.16879.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig87361.16879.1 vs. uniprot
Match: A0A7S6UA35_9STRA (50S ribosomal protein L21, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6UA35_9STRA)

HSP 1 Score: 208 bits (530), Expect = 2.920e-68
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1
Query:    1 MDYAIIEASGRQYWIEPKNFININRIPIKTGSTLEIRRILFVKKEESIFIGQPYLNQFKIKATVGKHFLGPKLVVFKMKPKKKYKRKSGHRQQLSRLVINTIES 312
            MDYAIIEASGRQYWIEPKNFININRIPIKTGSTLEIRRILFVKKEESIFIGQPYLNQFKIKATVGKHFLGPKLVVFKMKPKKKYKRKSGHRQQLSRLVINTIES
Sbjct:    1 MDYAIIEASGRQYWIEPKNFININRIPIKTGSTLEIRRILFVKKEESIFIGQPYLNQFKIKATVGKHFLGPKLVVFKMKPKKKYKRKSGHRQQLSRLVINTIES 104          
BLAST of mRNA_S-dermatodea_contig87361.16879.1 vs. uniprot
Match: A0A0R6M4T4_UNDPI (50S ribosomal protein L21, chloroplastic n=25 Tax=Phaeophyceae TaxID=2870 RepID=A0A0R6M4T4_UNDPI)

HSP 1 Score: 149 bits (376), Expect = 8.660e-45
Identity = 68/103 (66.02%), Postives = 87/103 (84.47%), Query Frame = 1
Query:    1 MDYAIIEASGRQYWIEPKNFININRIPIKTGSTLEIRRILFVKKEESIFIGQPYLNQFKIKATVGKHFLGPKLVVFKMKPKKKYKRKSGHRQQLSRLVINTIE 309
            M+YAIIEASGRQ+W+EPK FI  NR+ +K GST+ IRR+LFVK++++  IGQPYLN   +K  V KHFLGPK++VFKMKPKKKY++K GHRQ+L+RL+IN IE
Sbjct:    1 MEYAIIEASGRQFWVEPKKFIEFNRLILKIGSTILIRRVLFVKQKKNTLIGQPYLNNVVVKGVVSKHFLGPKILVFKMKPKKKYRKKIGHRQKLTRLLINKIE 103          
BLAST of mRNA_S-dermatodea_contig87361.16879.1 vs. uniprot
Match: A0A2R4QQ35_9PHAE (50S ribosomal protein L21 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QQ35_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 9.490e-45
Identity = 67/103 (65.05%), Postives = 85/103 (82.52%), Query Frame = 1
Query:    1 MDYAIIEASGRQYWIEPKNFININRIPIKTGSTLEIRRILFVKKEESIFIGQPYLNQFKIKATVGKHFLGPKLVVFKMKPKKKYKRKSGHRQQLSRLVINTIE 309
            M+YAIIEASGRQ+W+EPK FI  NR+P+K GST+ I+R+LFVKK+   FIGQPYL    +   + KHFLGPK++VFKMKPKKKY++K GHRQ+L+RL+IN IE
Sbjct:    1 MEYAIIEASGRQFWVEPKKFIEFNRLPLKVGSTIIIKRVLFVKKKADTFIGQPYLKNILLTGIISKHFLGPKVLVFKMKPKKKYRKKIGHRQKLTRLLINQIE 103          
BLAST of mRNA_S-dermatodea_contig87361.16879.1 vs. uniprot
Match: A0A141BSP2_9PHAE (50S ribosomal protein L21, chloroplastic n=14 Tax=Sargassum TaxID=3015 RepID=A0A141BSP2_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 1.520e-43
Identity = 65/103 (63.11%), Postives = 87/103 (84.47%), Query Frame = 1
Query:    1 MDYAIIEASGRQYWIEPKNFININRIPIKTGSTLEIRRILFVKKEESIFIGQPYLNQFKIKATVGKHFLGPKLVVFKMKPKKKYKRKSGHRQQLSRLVINTIE 309
            M+YAIIEASGRQ+W+EP  FI +NR+P++ GST+ I+RILFVKK+ + FIGQPYL    +K  + KHFLG K++VFKMKPKKKY++K GHRQ+L+RL+I++IE
Sbjct:    1 MEYAIIEASGRQFWVEPNKFIELNRLPLRIGSTILIKRILFVKKKTNTFIGQPYLTNIVLKGIISKHFLGSKILVFKMKPKKKYRKKMGHRQKLTRLLISSIE 103          
BLAST of mRNA_S-dermatodea_contig87361.16879.1 vs. uniprot
Match: A0A8F0F7S8_9PHAE (Ribosomal protein L21 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7S8_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 2.890e-43
Identity = 67/102 (65.69%), Postives = 83/102 (81.37%), Query Frame = 1
Query:    1 MDYAIIEASGRQYWIEPKNFININRIPIKTGSTLEIRRILFVKKEESIFIGQPYLNQFKIKATVGKHFLGPKLVVFKMKPKKKYKRKSGHRQQLSRLVINTI 306
            M+YAIIEASGRQ+W+EPK FI  N + IK GST+ IRR+LF K E + FIGQPYLN   +K  + KHFLGPK++VFKMKPKKKY++K GHRQ+L+RL+IN I
Sbjct:    1 MEYAIIEASGRQFWVEPKKFIEFNXLIIKIGSTILIRRVLFFKNETNTFIGQPYLNDVVVKGIISKHFLGPKVLVFKMKPKKKYRKKIGHRQKLTRLLINQI 102          
BLAST of mRNA_S-dermatodea_contig87361.16879.1 vs. uniprot
Match: A0A8F0JZ48_9PHAE (Ribosomal protein L21 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JZ48_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 5.840e-43
Identity = 66/102 (64.71%), Postives = 84/102 (82.35%), Query Frame = 1
Query:    1 MDYAIIEASGRQYWIEPKNFININRIPIKTGSTLEIRRILFVKKEESIFIGQPYLNQFKIKATVGKHFLGPKLVVFKMKPKKKYKRKSGHRQQLSRLVINTI 306
            M+YAIIEASGRQ+W+EPK FI  NR+ +K GST+ IRR+LFVKKE +  IG+PYL    +K  + KHFLGPK++VFKMKPKKKY++K GHRQ+L+RL+IN I
Sbjct:    1 MEYAIIEASGRQFWVEPKKFIEFNRLILKIGSTVLIRRVLFVKKEANTLIGRPYLEGIVLKGIISKHFLGPKIIVFKMKPKKKYRKKIGHRQKLTRLLINKI 102          
BLAST of mRNA_S-dermatodea_contig87361.16879.1 vs. uniprot
Match: B7T239_VAULI (50S ribosomal protein L21, chloroplastic n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T239_VAULI)

HSP 1 Score: 144 bits (362), Expect = 1.210e-42
Identity = 65/102 (63.73%), Postives = 84/102 (82.35%), Query Frame = 1
Query:    1 MDYAIIEASGRQYWIEPKNFININRIPIKTGSTLEIRRILFVKKEESIFIGQPYLNQFKIKATVGKHFLGPKLVVFKMKPKKKYKRKSGHRQQLSRLVINTI 306
            M Y IIEAS RQYWIEP   I+IN +PIK+GST+ + +ILF + ++ IFIG+PYLN+  +KAT+ KHFLGPK++V+KMKPKKKYKRK+GHRQ L+RL+I  I
Sbjct:    1 MIYGIIEASSRQYWIEPGKIIDINNLPIKSGSTILLNQILFARNQDQIFIGRPYLNKITVKATIEKHFLGPKIIVYKMKPKKKYKRKNGHRQHLTRLMIQKI 102          
BLAST of mRNA_S-dermatodea_contig87361.16879.1 vs. uniprot
Match: A0A1I9LVJ3_9PHAE (50S ribosomal protein L21, chloroplastic n=10 Tax=Ectocarpales TaxID=2877 RepID=A0A1I9LVJ3_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 1.370e-41
Identity = 64/103 (62.14%), Postives = 83/103 (80.58%), Query Frame = 1
Query:    1 MDYAIIEASGRQYWIEPKNFININRIPIKTGSTLEIRRILFVKKEESIFIGQPYLNQFKIKATVGKHFLGPKLVVFKMKPKKKYKRKSGHRQQLSRLVINTIE 309
            M+YAIIEASGRQ+W+EPK FI  NR+ +K GST+ IRRILF K + +  IGQPYL    +K  + KHFLGPK++VFKMKPKKKY++K GHRQ+++RL+I+ IE
Sbjct:    1 MEYAIIEASGRQFWVEPKKFIEFNRLILKIGSTILIRRILFAKNKTTTHIGQPYLKNILVKGKISKHFLGPKILVFKMKPKKKYRKKIGHRQKMTRLLIHKIE 103          
BLAST of mRNA_S-dermatodea_contig87361.16879.1 vs. uniprot
Match: A0A8F0JYD6_9PHAE (Ribosomal protein L21 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JYD6_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 3.930e-41
Identity = 67/103 (65.05%), Postives = 82/103 (79.61%), Query Frame = 1
Query:    1 MDYAIIEASGRQYWIEPKNFININRIPIKTGSTLEIRRILFVKKEESIFIGQPYLNQFKIKATVGKHFLGPKLVVFKMKPKKKYKRKSGHRQQLSRLVINTIE 309
            M+YA+IEASGRQ+W+EPK FI  NR+ I  GSTL ++RILF+ K  +I IGQPYL    IK  + KHFLGPK++VFKMKPKKKY+RK GHRQ+L+RL IN IE
Sbjct:    1 MEYAVIEASGRQFWVEPKKFIEFNRLLINIGSTLIMQRILFMNKTGAINIGQPYLPNTLIKGIISKHFLGPKILVFKMKPKKKYRRKIGHRQKLTRLFINQIE 103          
BLAST of mRNA_S-dermatodea_contig87361.16879.1 vs. uniprot
Match: A0A8E5XRL0_9PHAE (50S ribosomal protein L21, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRL0_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 1.700e-40
Identity = 61/103 (59.22%), Postives = 83/103 (80.58%), Query Frame = 1
Query:    1 MDYAIIEASGRQYWIEPKNFININRIPIKTGSTLEIRRILFVKKEESIFIGQPYLNQFKIKATVGKHFLGPKLVVFKMKPKKKYKRKSGHRQQLSRLVINTIE 309
            M YAIIEASGRQ+W+EP+ F+ +NR+P+  G+ + I+R+LF K  E   IGQPY+N  +IK  V KHFLGPKL+VFKMKPKKKY+++ GHRQ+L+RL+I+ I+
Sbjct:    1 MKYAIIEASGRQFWVEPEKFVELNRLPVNIGTKILIKRVLFAKTGEKTRIGQPYINHIEIKGVVSKHFLGPKLLVFKMKPKKKYRKRIGHRQKLTRLLISQIK 103          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig87361.16879.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S6UA35_9STRA2.920e-68100.0050S ribosomal protein L21, chloroplastic n=1 Tax=S... [more]
A0A0R6M4T4_UNDPI8.660e-4566.0250S ribosomal protein L21, chloroplastic n=25 Tax=... [more]
A0A2R4QQ35_9PHAE9.490e-4565.0550S ribosomal protein L21 n=3 Tax=Fucaceae TaxID=3... [more]
A0A141BSP2_9PHAE1.520e-4363.1150S ribosomal protein L21, chloroplastic n=14 Tax=... [more]
A0A8F0F7S8_9PHAE2.890e-4365.69Ribosomal protein L21 n=2 Tax=Laminariales TaxID=2... [more]
A0A8F0JZ48_9PHAE5.840e-4364.71Ribosomal protein L21 n=1 Tax=Chorda asiatica TaxI... [more]
B7T239_VAULI1.210e-4263.7350S ribosomal protein L21, chloroplastic n=1 Tax=V... [more]
A0A1I9LVJ3_9PHAE1.370e-4162.1450S ribosomal protein L21, chloroplastic n=10 Tax=... [more]
A0A8F0JYD6_9PHAE3.930e-4165.05Ribosomal protein L21 n=1 Tax=Protohalopteris sp. ... [more]
A0A8E5XRL0_9PHAE1.700e-4059.2250S ribosomal protein L21, chloroplastic n=1 Tax=I... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig87361contigS-dermatodea_contig87361:215..529 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.4
Seed ortholog evalue2.5e-31
Seed eggNOG ortholog2880.D1J6Z3
Preferred namerpl21
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.rRNA binding
EggNOG OGs2S7IP@2759,COG0261@1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size315
Cds size315
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925362.8652878-CDS-S-dermatodea_contig87361:214..5291622925362.8652878-CDS-S-dermatodea_contig87361:214..529Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig87361 215..529 +
1694079882.3132737-CDS-S-dermatodea_contig87361:214..5291694079882.3132737-CDS-S-dermatodea_contig87361:214..529Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig87361 215..529 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig87361.16879.1prot_S-dermatodea_contig87361.16879.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig87361 215..529 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig87361.16879.1

>prot_S-dermatodea_contig87361.16879.1 ID=prot_S-dermatodea_contig87361.16879.1|Name=mRNA_S-dermatodea_contig87361.16879.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=105bp
MDYAIIEASGRQYWIEPKNFININRIPIKTGSTLEIRRILFVKKEESIFI
GQPYLNQFKIKATVGKHFLGPKLVVFKMKPKKKYKRKSGHRQQLSRLVIN
TIES*
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mRNA from alignment at S-dermatodea_contig87361:215..529+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig87361.16879.1 ID=mRNA_S-dermatodea_contig87361.16879.1|Name=mRNA_S-dermatodea_contig87361.16879.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=315bp|location=Sequence derived from alignment at S-dermatodea_contig87361:215..529+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGATTATGCTATTATTGAAGCAAGTGGGCGCCAATATTGGATTGAACC CAAAAATTTTATTAATATAAATCGAATTCCAATCAAAACTGGTTCAACAC TAGAAATACGTCGGATTCTTTTTGTGAAAAAAGAAGAAAGTATTTTTATT GGTCAGCCTTATTTAAATCAATTTAAAATTAAAGCAACTGTTGGAAAACA TTTTCTTGGACCTAAACTAGTCGTTTTTAAAATGAAACCTAAGAAAAAGT ATAAAAGAAAATCAGGACATCGACAACAGTTATCTCGATTAGTCATCAAT ACTATTGAAAGTTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig87361:215..529+

>mRNA_S-dermatodea_contig87361.16879.1 ID=mRNA_S-dermatodea_contig87361.16879.1|Name=mRNA_S-dermatodea_contig87361.16879.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at S-dermatodea_contig87361:215..529+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGATTATGCTATTATTGAAGCAAGTGGGCGCCAATATTGGATTGAACC
CAAAAATTTTATTAATATAAATCGAATTCCAATCAAAACTGGTTCAACAC
TAGAAATACGTCGGATTCTTTTTGTGAAAAAAGAAGAAAGTATTTTTATT
GGTCAGCCTTATTTAAATCAATTTAAAATTAAAGCAACTGTTGGAAAACA
TTTTCTTGGACCTAAACTAGTCGTTTTTAAAATGAAACCTAAGAAAAAGT
ATAAAAGAAAATCAGGACATCGACAACAGTTATCTCGATTAGTCATCAAT
ACTATTGAAAGTTAAATGGATTATGCTATTATTGAAGCAAGTGGGCGCCA
ATATTGGATTGAACCCAAAAATTTTATTAATATAAATCGAATTCCAATCA
AAACTGGTTCAACACTAGAAATACGTCGGATTCTTTTTGTGAAAAAAGAA
GAAAGTATTTTTATTGGTCAGCCTTATTTAAATCAATTTAAAATTAAAGC
AACTGTTGGAAAACATTTTCTTGGACCTAAACTAGTCGTTTTTAAAATGA
AACCTAAGAAAAAGTATAAAAGAAAATCAGGACATCGACAACAGTTATCT
CGATTAGTCATCAATACTATTGAAAGTTAA
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