mRNA_S-dermatodea_contig873.16873.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig873.16873.1
Unique NamemRNA_S-dermatodea_contig873.16873.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig873.16873.1 vs. uniprot
Match: D7FRJ8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRJ8_ECTSI)

HSP 1 Score: 723 bits (1866), Expect = 1.800e-255
Identity = 357/431 (82.83%), Postives = 388/431 (90.02%), Query Frame = 1
Query:   55 MSALA-TAPAGTSDRVAALRSLACIRARCGVILEAAKSDSLSHFRVNLAKVDHVATFVQGLMDRDYASYDDVPYHSRWRHFEAGAIDRTAGLKERWESSKDCGGLEQARRLVDLVTTSVLLDAGAGDLWKYKEAGTGYEVGRSEGLGVASFHMFDEGAFSSDPGNFPHRADSTGLKGLADDSVRRAFQVDDAANPLVGCDGRTQVLKRLGTALDQHPEYFETGGVFRPGNMVDYLLAQAAPGTKTVSIEKVWEVVMYGFEAIWPAGRTELDGRSMGDVWEHSALPDDGSGWSNLVPFHKLSQWMTYSLMEPLQQEAGLVLTDKKIMTGLPEYRNGGLLLDLGLLEAKYPGVTEEPHRPEEEVIVEWRALTVGLLDEVAVALRKKLGKTEEEFPLVKMLEGGTWKAGRAMAKKLRPETCAPPIQIVSDGTVF 1344
            MS+LA TAPAGTS+RVA LRSLACIR RCGVI +AAKSD L+HFR++L+K+D VATFVQGLMDRDY+SYDDVPYHSRWRHFEAG +DRTA L   W+ SK C  LE+ARRLVDLV TSVLLDAGAGD+WKY E  TG+E GRSEGLGVASFHMF  GAFSSD G+ PHRADS GLKGLADDSVRRAFQVDD  NPLVGCDGRTQVLKRLGTAL+QHP +FE GG+FRPGNMVDYLLAQA+  +KTVSI KVWEVVMYGFEA+WPAGRTELDGRSMGDVWEHSALPDDGSGWSNLVPFHKLSQWMTYSLMEPLQ  AGLVLT+ ++MTGLPEYRNGGLLLD+GLLEAK+PGVT + H PEEEVIVEWRALTV LLDEVA ALR+KLGKTE+EFPLVKMLEGGTWKAGR MAK LRP+TC PPI+IVSDGTVF
Sbjct:    1 MSSLAYTAPAGTSERVATLRSLACIRERCGVIFDAAKSDKLAHFRLDLSKMDDVATFVQGLMDRDYSSYDDVPYHSRWRHFEAGGLDRTARLTAAWDGSKSCDELEKARRLVDLVVTSVLLDAGAGDVWKYTEKSTGFEAGRSEGLGVASFHMFGAGAFSSDTGSNPHRADSLGLKGLADDSVRRAFQVDDGVNPLVGCDGRTQVLKRLGTALEQHPVFFEAGGIFRPGNMVDYLLAQASDDSKTVSITKVWEVVMYGFEAMWPAGRTELDGRSMGDVWEHSALPDDGSGWSNLVPFHKLSQWMTYSLMEPLQA-AGLVLTETELMTGLPEYRNGGLLLDMGLLEAKHPGVTGQAHGPEEEVIVEWRALTVCLLDEVAAALRQKLGKTEKEFPLVKMLEGGTWKAGRYMAKTLRPQTCGPPIEIVSDGTVF 430          
BLAST of mRNA_S-dermatodea_contig873.16873.1 vs. uniprot
Match: A0A835ZFF8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFF8_9STRA)

HSP 1 Score: 572 bits (1475), Expect = 2.740e-196
Identity = 287/434 (66.13%), Postives = 342/434 (78.80%), Query Frame = 1
Query:   52 AMSALATAPAGTSDRVAALRSLACIRARCGVILEAAKSDSLSHFRVNLAKVDHVATFVQGLMDRDYASYDDVPYHSRWRHFEAGAIDRTAGLKERWESSKDCGGLEQARRLVDLVTTSVLLDAGAGDLWKYKEAGTGYEVGRSEGLGVASFHMFDEGAFSSDPGNFPHRADSTGLKGLADDSVRRAFQV-DDAANPLVGCDGRTQVLKRLGTALDQHPEYFETGGVFRPGNMVDYLLAQAAPGTKTVSIEKVWEVVMYGFEAIWPA--GRTELDGRSMGDVWEHSALPDDGSGWSNLVPFHKLSQWMTYSLMEPLQQEAGLVLTDKKIMTGLPEYRNGGLLLDLGLLEAKYPGVTEEPHRPEEEVIVEWRALTVGLLDEVAVALRKKLGKTEEEFPLVKMLEGGTWKAGRAMAKKLRPETCAPPIQIVSDGTVF 1344
            A +A    P G S+ VA LR+L C+R RC  IL  AK+D L HF++N AK+D VA FV+GLMD+DY SYD VP+HSR RHFEAG IDR   L   W     CG +E+ARRL+DLV  SVLLDAGAG+ W+Y E GT ++ GRSEGLGVASFHMF  GAFSSD  N PHRAD+ GL+ L DD+VR+AFQ  ++AANPLVGCDGRTQVLKRLG+AL QHP+YFE  G+FRPGNMVDYL AQA     +VS+  +WEVVMYGFEA+WPA  GR  LDGRSMGDVW+HSALP+DG+ W  L+PFHKLSQW+T+SLMEPL + AG+ L +  +MTGLPEYRNGGLL+D+G+LE +YP V  +PH P+EEVIVEWRALTV LLDE+  ALR K+G++EEEFPLVKMLE GTWKAGR +A++  P T APPIQI+SDGTVF
Sbjct:    2 AEAAAMAGPQGASEGVATLRTLQCVRERCNAILALAKADKLKHFKLNEAKIDAVADFVKGLMDKDYPSYDAVPFHSRLRHFEAGGIDRVTPLTNSWA----CGPMEEARRLIDLVVVSVLLDAGAGNKWRYTEKGTNFKAGRSEGLGVASFHMFYSGAFSSDVTN-PHRADAVGLQRLPDDAVRKAFQATNEAANPLVGCDGRTQVLKRLGSALLQHPQYFEREGLFRPGNMVDYLFAQAGEDG-SVSLTSLWEVVMYGFEAMWPADGGRVSLDGRSMGDVWKHSALPEDGTNWGQLIPFHKLSQWLTFSLMEPLMR-AGMKLKNTTLMTGLPEYRNGGLLVDMGVLEPQYPEVVSKPHTPDEEVIVEWRALTVALLDEIYAALRAKIGQSEEEFPLVKMLECGTWKAGRVVAQQRDPATSAPPIQIISDGTVF 428          
BLAST of mRNA_S-dermatodea_contig873.16873.1 vs. uniprot
Match: W7TK87_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TK87_9STRA)

HSP 1 Score: 432 bits (1110), Expect = 1.360e-140
Identity = 246/451 (54.55%), Postives = 297/451 (65.85%), Query Frame = 1
Query:   91 DRVAALRSLACIRARCGVILEAAKSDSLSHFRVNLAKVDHVATFVQGLMDRDY-ASYDDVPYHSRWRHFEAGAIDRTAGLKERWESSKDCGGLEQARRLVDLVTTSVLLDAGAGDLWKYKEAGTGYEVGRSEGLGVASFHMFDEGAFSSDPGNFPHR---ADSTGLKGLADDSVRRAFQVDDAANPLVGCDGRTQVLKRLGTALDQHPEYF----------ETGG--VFRPGNMVDYLLAQAAPGTK--TVSIEKVWEVVMYGFEAIWPAGRTELDGRSMGDVWEHSALP---------DDGSGWSN-----LVPFHKLSQWMTYSLMEPLQQEAGLVLTDKKIMTGLPEYRNGGLLLDLGLLEAKYPGVTEEP-HRPEEEVIVEWRALTVGLLDEVAVALRKKLGKTEEEFPLVKMLEGGTWKAGRAMAKKLRPETCAPPIQIVSDGTVF 1344
            D V  LR+L  IR RC  I  A +   L HF ++  K+  V  +VQ +++  +    D VP HSR+RHFE G +DR + L+    + KD    E ARRLVDLV  SVLLDAGAGD WKY E  TG  + RSEGLGVASF MF +GAFSSD      +   AD+ GL+ L    VR  FQV + +NPLVG +GR  +L+RLG AL++HPE+F          E GG  +FRPG +VDYL AQA PGT   +V +  +W VVM G E+IWPAGRT + GR MGDVW HSAL          D G G        LVPFHKLSQW+TYSLMEPL  EAGL LT+ + MTGLPEYRNGGL +DLG+LEAK P + +   H P  EVIVEWRALTV LLDEVA  LR+KLG +E+  PLVK+LEGGTW AGR +A++ RP++C PPI IVSDGTVF
Sbjct:   33 DPVDKLRALPTIRERCQQIYAAGQRGELKHFALHEDKIGEVVDYVQSVIEERFPGGMDMVPNHSRYRHFEPGNVDRLSQLRS---ACKDVDKREVARRLVDLVVVSVLLDAGAGDKWKYVEKETGLTIDRSEGLGVASFRMFMDGAFSSDAEQAKGKRLQADAVGLQALTSQRVREGFQVKEDSNPLVGTEGRAALLRRLGKALEEHPEFFSSRLASKGADEDGGAEIFRPGYLVDYLFAQANPGTDPASVPVHDLWRVVMDGLESIWPAGRTSVGGRPMGDVWPHSALALGGKVAEEGDGGLGEEKEAGACLVPFHKLSQWLTYSLMEPLA-EAGLALTETRHMTGLPEYRNGGLFVDLGVLEAKRPELLDPAGHAPGSEVIVEWRALTVVLLDEVARRLREKLGASEKSLPLVKVLEGGTWTAGRKIAREKRPDSCGPPIVIVSDGTVF 479          
BLAST of mRNA_S-dermatodea_contig873.16873.1 vs. uniprot
Match: A0A8K1CFN5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CFN5_PYTOL)

HSP 1 Score: 416 bits (1070), Expect = 1.710e-135
Identity = 224/422 (53.08%), Postives = 277/422 (65.64%), Query Frame = 1
Query:   88 SDRVAALRSLACIRARCGVILEAAKSDSLSHFRVNLAKVDHVATFVQGLMDRDYASYD-DVPYHSRWRHFEAGAIDRTAGLKERWESSKDCGGLEQARRLVDLVTTSVLLDAGAGDLWKYKEAGTGYEVGRSEGLGVASFHMFDEGAFSSDPGNFPHRADSTGLKGLADDSVRRAFQVDDAANPLVGCDGRTQVLKRLGTALDQHPEYFE--TGGVFRPGNMVDYLLAQAAPGTKTVSIEKVWEVVMYGFEAIWPAGRTELDGRSMGDVWEHSALPDDGSGWSNLVPFHKLSQWMTYSLMEPLQQEAGLVLTDKKIMTGLPEYRNGGLLLDLGLLEAKYPGVTEEPHRPEEEVIVEWRALTVGLLDEVAVALRKKLGKTEEEFPLVKMLEGGTWKAGRAMAKKLRPETCAPPIQIVSDGTVF 1344
            +D V  LRSL  +R  C  +   AK D L HFRV+  K+   A +V  ++   Y   +  VP+HSRWRHFE G  +R   L   W     C   E+ARRL+DL   SVLLDAGAG  WK+KE GT     RSEGLG+ASFHMF  GAFSSDP   PHR D+  L  L  D++ +AFQVDD++NPLVGC GRT +LKRLG ++  HPE+F    G V RPGN+VDYL A      + +SI  +W+ V+YG + IWPA RT++ G++MGDVWE S LP       + V FHKLSQW+TYSLMEPLQ +AGL +TD ++MTGLPEYRNGGLL+D G+L  K   +  +   P  EVIVEWRALTV LLDE+   +  +L    + FPLVKMLEGG+WKAGR +AK  R +   PPI I SDGTVF
Sbjct:    5 ADLVTYLRSLPSVRETCQRVYALAKEDRLPHFRVDQDKIPQAADYVIEVIRESYPGNEAGVPFHSRWRHFETGNPERVPELTATWT----CDAKEKARRLIDLALVSVLLDAGAGPTWKFKEPGTEDYYSRSEGLGIASFHMFVNGAFSSDPAAHPHRVDAEALIQLRSDAIAKAFQVDDSSNPLVGCAGRTDLLKRLGLSVKGHPEFFAGPVGSVARPGNLVDYLFALKNDKNE-ISITALWKAVIYGLQEIWPASRTQIAGQNMGDVWELSYLPASERAGKH-VSFHKLSQWLTYSLMEPLQ-DAGLKITDLELMTGLPEYRNGGLLVDFGVLVPKTDNILTDAFDPSSEVIVEWRALTVALLDEIHKVILARLNLKADVFPLVKMLEGGSWKAGRVIAKSKRADG-GPPITIQSDGTVF 418          
BLAST of mRNA_S-dermatodea_contig873.16873.1 vs. uniprot
Match: W2QCQ7_PHYPN (Uncharacterized protein n=20 Tax=Phytophthora TaxID=4783 RepID=W2QCQ7_PHYPN)

HSP 1 Score: 418 bits (1074), Expect = 1.810e-135
Identity = 228/430 (53.02%), Postives = 287/430 (66.74%), Query Frame = 1
Query:   64 LATAPAGTSDRVAALRSLACIRARCGVILEAAKSDSLSHFRVNLAKVDHVATFVQGLMDRDYASYDD--VPYHSRWRHFEAGAIDRTAGLKERWESSKDCGGLEQARRLVDLVTTSVLLDAGAGDLWKYKEAGTGYEVGRSEGLGVASFHMFDEGAFSSDPGNFPHRADSTGLKGLADDSVRRAFQVDDAANPLVGCDGRTQVLKRLGTALDQHPEYFE-TGGVFRPGNMVDYLLAQAAPGTKTVSIEKVWEVVMYGFEAIWPAGRTELDGRSMGDVWEHSALPDDGSGWSNLVPFHKLSQWMTYSLMEPLQQEAGLVLTDKKIMTGLPEYRNGGLLLDLGLLEAKYPGVTEEPHRPEEEVIVEWRALTVGLLDEVAVALRKKLGKTEEEFPLVKMLEGGTWKAGRAMAKKLRPETCAPPIQIVSDGTVF 1344
            L T P   +D+VA LRSL  IR  C  +L   K D L HF V  +KV  +A +V  +  + Y + ++  VP+HSRWRHFE G   R   +   W     C  LE+ARRL+DL   SVLLDAGAG  WKYKE GT     RSEGLG+ASFHMF  G FSSDP N PHR D+  L  LAD+++ +AFQV +  NPLVGC GRT +LK LG ++  +PE+F+   G  RPGNMVDYL  +    +  VSI  +W+VV+YG + IWPA RT++DG++MGDVWE S LP+        V FHKLSQW+TYSLMEPLQ +AG  +TD K+MTGLPEYRNGGLL+D G+L  K   +  +   P  EVI+EWRALTV +LDE+   + ++L  T + FPLVKMLEGG+WKAGR +AK+ R +   PPI+I SDGTVF
Sbjct:   41 LQTMPLSPADQVAYLRSLPSIRDGCHRVLALGKQDKLPHFSVVESKVPALADYVINVFRQSYPTPNEANVPFHSRWRHFETGNPQRVEKMTATWS----CDKLEKARRLLDLALVSVLLDAGAGPTWKYKEPGTEDFYSRSEGLGIASFHMFLAGNFSSDPENDPHRVDAAALANLADEAISKAFQVTEE-NPLVGCAGRTDLLKGLGKSIANYPEFFKGADGSIRPGNMVDYL-TKHQNSSGEVSITDLWKVVLYGLQDIWPASRTQIDGQNMGDVWELSYLPEHEKA-GKFVSFHKLSQWLTYSLMEPLQ-DAGFKITDLKLMTGLPEYRNGGLLVDFGVLVPKSASILTDEFDPSTEVIIEWRALTVAILDELHKVILERLNFTADFFPLVKMLEGGSWKAGRVIAKEKRADG-GPPIKIKSDGTVF 461          
BLAST of mRNA_S-dermatodea_contig873.16873.1 vs. uniprot
Match: A0A5D6Y127_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y127_9STRA)

HSP 1 Score: 415 bits (1066), Expect = 6.550e-135
Identity = 230/424 (54.25%), Postives = 281/424 (66.27%), Query Frame = 1
Query:   88 SDRVAALRSLACIRARCGVILEAAKSDSLSHFRVNLAKVDHVATFVQGLMDRDYASYDDV---PYHSRWRHFEAGAIDRTAGLKERWESSKDCGGLEQARRLVDLVTTSVLLDAGAGDLWKYKEAGTGYEVGRSEGLGVASFHMFDEGAFSSDPGNFPHRADSTGLKGLADDSVRRAFQVDDAANPLVGCDGRTQVLKRLGTALDQHPEYFE--TGGVFRPGNMVDYLLAQAAPGTKTVSIEKVWEVVMYGFEAIWPAGRTELDGRSMGDVWEHSALPDDGSGWSNLVPFHKLSQWMTYSLMEPLQQEAGLVLTDKKIMTGLPEYRNGGLLLDLGLLEAKYPGVTEEPHRPEEEVIVEWRALTVGLLDEVAVALRKKLGKTEEEFPLVKMLEGGTWKAGRAMAKKLRPETCAPPIQIVSDGTVF 1344
            S+RV  LRSL  +R  C  +L  A+ D+L  F+V+  KV   A +V  ++ + YA  DDV   P+HSRWRHFE G   R   +   W    DC  LE+ARRL+DL   SVLLDAGAG  WKY+E GT     RSEGLGVAS HMF +GAFSSD  N PH +D+  L  L  DS+ +AFQVD+A NPLVGC GRT +LKRLG +L  HPE+F    G   RPGN+VDYLL       + VSI ++W VV+YG + IWP  RT L G++MGDVWE S LP+D       V FHKLSQW+TYSLMEPLQ + G  +TD  +MTGLPEYRNGGLL+D G+L  K   +  +   P  EVI+EWRALTV LLDE+   + ++L  T E FPLVKMLEGG+WKAGR +AK+ R +   PPI I SDGTVF
Sbjct:    5 SERVEYLRSLPSVREGCRRVLALARDDALPSFKVDFDKVPSAADYVINVIRQTYA--DDVASVPFHSRWRHFETGNPKRVENMTASW----DCDALEKARRLIDLALVSVLLDAGAGPTWKYEEPGTEDTYSRSEGLGVASLHMFLQGAFSSDLLN-PHCSDADALANLPSDSIAKAFQVDEATNPLVGCAGRTDLLKRLGQSLKAHPEFFAGTVGSSNRPGNLVDYLLKHKNEQNE-VSITELWRVVVYGLQDIWPDSRTRLGGQNMGDVWELSYLPEDEKA-GKFVSFHKLSQWLTYSLMEPLQ-DYGFKITDLGLMTGLPEYRNGGLLVDFGVLIPKDGKILTDEFEPSSEVIIEWRALTVALLDEIHKVILERLSFTAEAFPLVKMLEGGSWKAGRVIAKEKRADG-GPPITIKSDGTVF 417          
BLAST of mRNA_S-dermatodea_contig873.16873.1 vs. uniprot
Match: A0A3F2RKM4_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RKM4_9STRA)

HSP 1 Score: 414 bits (1065), Expect = 9.570e-135
Identity = 226/421 (53.68%), Postives = 281/421 (66.75%), Query Frame = 1
Query:   91 DRVAALRSLACIRARCGVILEAAKSDSLSHFRVNLAKVDHVATFVQGLMDRDYAS-YDDVPYHSRWRHFEAGAIDRTAGLKERWESSKDCGGLEQARRLVDLVTTSVLLDAGAGDLWKYKEAGTGYEVGRSEGLGVASFHMFDEGAFSSDPGNFPHRADSTGLKGLADDSVRRAFQVDDAANPLVGCDGRTQVLKRLGTALDQHPEYF--ETGGVFRPGNMVDYLLAQAAPGTKTVSIEKVWEVVMYGFEAIWPAGRTELDGRSMGDVWEHSALPDDGSGWSNLVPFHKLSQWMTYSLMEPLQQEAGLVLTDKKIMTGLPEYRNGGLLLDLGLLEAKYPGVTEEPHRPEEEVIVEWRALTVGLLDEVAVALRKKLGKTEEEFPLVKMLEGGTWKAGRAMAKKLRPETCAPPIQIVSDGTVF 1344
            D+V  LRSL  +R  C  +   AK D L +F V   K+  +A +V  ++ + Y +    VP+HSRWRHFE G   R   +   W     C  LE+AR+L+DL   SVLLDAGAG  WKYKE GT     RSEGLGVASFHMF +G FSSDP N PHR D+  L  L DD++ +AFQV DA NPLVGC GRT +LKRLG ++  +PE+F  E G   RPGNMVDYL       ++ VSI  +W+VV+YG + IWPA RT + G++MGDVWE S LP+        V FHKLSQW+TYSLMEPLQ +AG  +TD K+MTGLPEYRNGGLL+D G+L  K P +  +   P  EVIVEWRALTV +LD+V   + ++L  T + FPLVKMLEGG+WKAGR +AK+ R +   PPI+I SDGTVF
Sbjct:    7 DQVEYLRSLPSVREGCHRVYALAKEDKLPNFSVVQDKIPELADYVIAIIRQSYPTDVASVPFHSRWRHFETGNPLRVQQMTASWH----CDKLEKARKLLDLALVSVLLDAGAGPTWKYKEPGTEDFYNRSEGLGVASFHMFLQGNFSSDPVNDPHRVDAEALANLPDDAIAKAFQVSDA-NPLVGCAGRTDLLKRLGKSIANYPEFFKAEDGKSVRPGNMVDYLTKHQNASSE-VSIADLWKVVLYGLQDIWPASRTRVGGQNMGDVWELSYLPEHEKA-GKFVSFHKLSQWLTYSLMEPLQ-DAGFKITDLKLMTGLPEYRNGGLLVDFGVLTPKSPNILTDEFDPSSEVIVEWRALTVAILDDVHKVILERLNFTADVFPLVKMLEGGSWKAGRVIAKEKRADG-GPPIKIKSDGTVF 418          
BLAST of mRNA_S-dermatodea_contig873.16873.1 vs. uniprot
Match: G4YF62_PHYSP (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=G4YF62_PHYSP)

HSP 1 Score: 408 bits (1048), Expect = 3.340e-132
Identity = 220/426 (51.64%), Postives = 285/426 (66.90%), Query Frame = 1
Query:   79 AGTSDRVAALRSLACIRARCGVILEAAKSDSLSHFRVNLAKVDHVATFVQGLMDRDYASYDD--VPYHSRWRHFEAGAIDRTAGLKERWESSKDCGGLEQARRLVDLVTTSVLLDAGAGDLWKYKEAGTGYEVGRSEGLGVASFHMFDEGAFSSDPGNFPHRADSTGLKGLADDSVRRAFQVDDAANPLVGCDGRTQVLKRLGTALDQHPEYFE-TGGVFRPGNMVDYLLA-QAAPGTKTVSIEKVWEVVMYGFEAIWPAGRTELDGRSMGDVWEHSALPDDGSGWSNLVPFHKLSQWMTYSLMEPLQQEAGLVLTDKKIMTGLPEYRNGGLLLDLGLLEAKYPGVTEEPHRPEEEVIVEWRALTVGLLDEVAVALRKKLGKTEEEFPLVKMLEGGTWKAGRAMAKKLRPETCAPPIQIVSDGTVF 1344
            A   ++VA LRSL  +R  C  +L     D L HF V   ++  +A +V G++ + Y + ++  VP+HSRWRHFE G   R   +   W     C  LE+ARRL+DL   SVLLDAGAG  W +KE G+     RSEGLG+ASFHMF +G+FS+ P   PHR D+  L  L DD++ +AFQV D+ NPLVGC GRT +LKRLG ++  +PE+F+   G  RPGN+VDYL   Q A G   VSI ++W+VV+YG + IWP  RT + G++MGDVWE S LP+       LV FHKLSQW+TYSLMEPLQ +AG  +TD K+MTGLPEYRNGGLL+D G+L  K P +  +   P  EVI+EWRALTV +LDE+   + ++L  T + FPLVKMLEGG+WKAGR +AK+ R +   PPI+I SDGTVF
Sbjct:    3 ASPEEQVAFLRSLPSVRDGCHRVLALGLQDKLPHFSVAKDQIPALADYVLGVIRQSYPTPNEANVPFHSRWRHFETGKPQRVQQMTAAWS----CDALEKARRLLDLALVSVLLDAGAGPTWTFKEPGSEDVYSRSEGLGIASFHMFLDGSFSAQPDKDPHRVDAAALANLPDDAIAKAFQVSDS-NPLVGCAGRTDLLKRLGKSIANYPEFFQGEDGSIRPGNVVDYLKKHQNASGE--VSITQLWKVVLYGLQDIWPESRTRIGGQNMGDVWELSYLPEHEKA-GKLVSFHKLSQWLTYSLMEPLQ-DAGFKITDLKLMTGLPEYRNGGLLVDFGVLVPKSPNILTDEFDPSTEVIIEWRALTVAILDELHKVILERLNFTADFFPLVKMLEGGSWKAGRVIAKEKRADG-GPPIKIKSDGTVF 418          
BLAST of mRNA_S-dermatodea_contig873.16873.1 vs. uniprot
Match: D0MYM3_PHYIT (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=D0MYM3_PHYIT)

HSP 1 Score: 406 bits (1044), Expect = 1.320e-131
Identity = 225/427 (52.69%), Postives = 283/427 (66.28%), Query Frame = 1
Query:   76 PAGTSDRVAALRSLACIRARCGVILEAAKSDSLSHFRVNLAKVDHVATFVQGLMDRDYASYDD--VPYHSRWRHFEAGAIDRTAGLKERWESSKDCGGLEQARRLVDLVTTSVLLDAGAGDLWKYKEAGTGYEVGRSEGLGVASFHMFDEGAFSSDPGNFPHRADSTGLKGLADDSVRRAFQVDDAANPLVGCDGRTQVLKRLGTALDQHPEYFE-TGGVFRPGNMVDYLLA-QAAPGTKTVSIEKVWEVVMYGFEAIWPAGRTELDGRSMGDVWEHSALPDDGSGWSNLVPFHKLSQWMTYSLMEPLQQEAGLVLTDKKIMTGLPEYRNGGLLLDLGLLEAKYPGVTEEPHRPEEEVIVEWRALTVGLLDEVAVALRKKLGKTEEEFPLVKMLEGGTWKAGRAMAKKLRPETCAPPIQIVSDGTVF 1344
            P   +++V+ LRSL  IR  C  +L+  K D L +F V  +KV  +A +V  ++ + Y + ++  VP+HSRWRHFE G   R   +   W     C  LE+ARRL+DL   SVLLDAGAG  WKYKE GT     RSEGLG+ASFHMF  G FS DP   PHR D+T L  L D+++  AFQV DA NPLVGC GRT +LKRLG ++  +PE+F    G  RPGNMVDYL   Q A G   VS+  +W+ V+ G + IWPA RT++DG++MGDVWE S LP+        V FHKLSQWMTYSLMEPLQ +AG  +TD K+MTGLPEYRNGGLL+D G+L  K   +  +   P  EVI+EWRALTV +LDE+   +  +L  T + FPLVKMLEGG+WKAGR +AK+ R +   PPI+I SDGTVF
Sbjct:    2 PLTPANQVSYLRSLPSIREGCHRVLDLGKQDKLPNFSVVESKVPALADYVISVIRQLYPTPNEANVPFHSRWRHFETGNPQRVEKMTSTWH----CDKLEKARRLLDLALVSVLLDAGAGPTWKYKEPGTEDFYSRSEGLGIASFHMFVAGNFSVDPEKDPHRVDATALANLPDEAISDAFQVTDA-NPLVGCAGRTDLLKRLGKSISNYPEFFSGADGSIRPGNMVDYLTKHQNASGE--VSVTDLWKAVLNGLQDIWPASRTQIDGQNMGDVWELSYLPEHEKA-GKFVSFHKLSQWMTYSLMEPLQ-DAGFKITDLKLMTGLPEYRNGGLLVDFGVLVPKSANILTDEFDPSTEVIIEWRALTVAILDELHKVILGRLNFTADLFPLVKMLEGGSWKAGRVIAKEKRADG-GPPIKIKSDGTVF 418          
BLAST of mRNA_S-dermatodea_contig873.16873.1 vs. uniprot
Match: M4BXD1_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BXD1_HYAAE)

HSP 1 Score: 402 bits (1033), Expect = 5.830e-130
Identity = 223/427 (52.22%), Postives = 278/427 (65.11%), Query Frame = 1
Query:   76 PAGTSDRVAALRSLACIRARCGVILEAAKSDSLSHFRVNLAKVDHVATFVQGLMDRDYASYDDV--PYHSRWRHFEAGAIDRTAGLKERWESSKDCGGLEQARRLVDLVTTSVLLDAGAGDLWKYKEAGTGYEVGRSEGLGVASFHMFDEGAFSSDPGNFPHRADSTGLKGLADDSVRRAFQVDDAANPLVGCDGRTQVLKRLGTALDQHPEYFE-TGGVFRPGNMVDYLLA-QAAPGTKTVSIEKVWEVVMYGFEAIWPAGRTELDGRSMGDVWEHSALPDDGSGWSNLVPFHKLSQWMTYSLMEPLQQEAGLVLTDKKIMTGLPEYRNGGLLLDLGLLEAKYPGVTEEPHRPEEEVIVEWRALTVGLLDEVAVALRKKLGKTEEEFPLVKMLEGGTWKAGRAMAKKLRPETCAPPIQIVSDGTVF 1344
            P    D+V  LRSL  +R  C  +   A++D L HF V  +K+  +A +V  ++ + Y S ++V  P+HSRWRHFE G   R   +   W     C  LE+ARRLVDL   SVLLDAGAG  W+Y+E  T     RSEGLGVAS HMF  G+FS+DP N PHR D+  L  L DD++  AFQV +  N L+GC GRT +LKRLGT++  +PE+F+ T G  RPGNMVDYL   Q A G   VSI  +W+VV+YG + IWP  RT +DG++MGDVWE   L +        V FHKLSQW+TYSLMEPLQ EAG  +TD  +MTGLPEYRNGGLL+D G+L  K      +   P  EVI+EWRALTV +LDE+   + K+L  T E FPLVKMLEGGTWKAGR +A + R +   PPI+I SDGTVF
Sbjct:    2 PVSPHDQVEYLRSLPSVRDSCHRVFRLAEADKLPHFSVVESKISALADYVINVIRQSYPSPNEVHVPFHSRWRHFETGDPHRVEKMTSSWH----CDQLEKARRLVDLAIVSVLLDAGAGPSWRYQEPETDDVYRRSEGLGVASLHMFQAGSFSADPINEPHRVDARALAHLPDDAITTAFQVTET-NSLLGCVGRTDLLKRLGTSIANYPEFFKGTDGSVRPGNMVDYLKERQTASGE--VSITDLWKVVVYGLQDIWPESRTRIDGQNMGDVWELPYLAEHEKA-GRFVSFHKLSQWLTYSLMEPLQ-EAGFKITDLHLMTGLPEYRNGGLLVDFGVLVPKSSSTLVDEFSPSAEVIIEWRALTVSILDELHAVILKRLNFTAEVFPLVKMLEGGTWKAGRVIASEKRTDG-GPPIKIKSDGTVF 418          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig873.16873.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRJ8_ECTSI1.800e-25582.83Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZFF8_9STRA2.740e-19666.13Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TK87_9STRA1.360e-14054.55Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A8K1CFN5_PYTOL1.710e-13553.08Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
W2QCQ7_PHYPN1.810e-13553.02Uncharacterized protein n=20 Tax=Phytophthora TaxI... [more]
A0A5D6Y127_9STRA6.550e-13554.25Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A3F2RKM4_9STRA9.570e-13553.68Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
G4YF62_PHYSP3.340e-13251.64Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]
D0MYM3_PHYIT1.320e-13152.69Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
M4BXD1_HYAAE5.830e-13052.22Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig873contigS-dermatodea_contig873:3782..10868 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score725.3
Seed ortholog evalue1.6e-206
Seed eggNOG ortholog2880.D7FRJ8
GOsGO:0003674,GO:0003824
EggNOG free text desc.Protein of unknown function (DUF1688)
EggNOG OGs28IT5@1,2QR4F@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein of unknown function DUF1688
Ec32 orthologEc-09_000190.1
Exons6
Model size2331
Cds size1293
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig873.16873.1prot_S-dermatodea_contig873.16873.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig873 3836..9884 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925362.2939289-UTR-S-dermatodea_contig873:3781..38351622925362.2939289-UTR-S-dermatodea_contig873:3781..3835Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig873 3782..3835 +
1694079881.8725924-UTR-S-dermatodea_contig873:3781..38351694079881.8725924-UTR-S-dermatodea_contig873:3781..3835Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig873 3782..3835 +
1622925362.3711443-UTR-S-dermatodea_contig873:9884..108681622925362.3711443-UTR-S-dermatodea_contig873:9884..10868Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig873 9885..10868 +
1694079881.9519281-UTR-S-dermatodea_contig873:9884..108681694079881.9519281-UTR-S-dermatodea_contig873:9884..10868Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig873 9885..10868 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925362.3065748-CDS-S-dermatodea_contig873:3835..44441622925362.3065748-CDS-S-dermatodea_contig873:3835..4444Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig873 3836..4444 +
1694079881.8865902-CDS-S-dermatodea_contig873:3835..44441694079881.8865902-CDS-S-dermatodea_contig873:3835..4444Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig873 3836..4444 +
1622925362.3184905-CDS-S-dermatodea_contig873:5718..58381622925362.3184905-CDS-S-dermatodea_contig873:5718..5838Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig873 5719..5838 +
1694079881.8974807-CDS-S-dermatodea_contig873:5718..58381694079881.8974807-CDS-S-dermatodea_contig873:5718..5838Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig873 5719..5838 +
1622925362.3279464-CDS-S-dermatodea_contig873:6681..68881622925362.3279464-CDS-S-dermatodea_contig873:6681..6888Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig873 6682..6888 +
1694079881.909006-CDS-S-dermatodea_contig873:6681..68881694079881.909006-CDS-S-dermatodea_contig873:6681..6888Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig873 6682..6888 +
1622925362.337478-CDS-S-dermatodea_contig873:7586..77301622925362.337478-CDS-S-dermatodea_contig873:7586..7730Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig873 7587..7730 +
1694079881.922116-CDS-S-dermatodea_contig873:7586..77301694079881.922116-CDS-S-dermatodea_contig873:7586..7730Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig873 7587..7730 +
1622925362.3497086-CDS-S-dermatodea_contig873:7903..80081622925362.3497086-CDS-S-dermatodea_contig873:7903..8008Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig873 7904..8008 +
1694079881.9328191-CDS-S-dermatodea_contig873:7903..80081694079881.9328191-CDS-S-dermatodea_contig873:7903..8008Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig873 7904..8008 +
1622925362.3591835-CDS-S-dermatodea_contig873:9776..98841622925362.3591835-CDS-S-dermatodea_contig873:9776..9884Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig873 9777..9884 +
1694079881.9424145-CDS-S-dermatodea_contig873:9776..98841694079881.9424145-CDS-S-dermatodea_contig873:9776..9884Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig873 9777..9884 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig873.16873.1

>prot_S-dermatodea_contig873.16873.1 ID=prot_S-dermatodea_contig873.16873.1|Name=mRNA_S-dermatodea_contig873.16873.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=431bp
MSALATAPAGTSDRVAALRSLACIRARCGVILEAAKSDSLSHFRVNLAKV
DHVATFVQGLMDRDYASYDDVPYHSRWRHFEAGAIDRTAGLKERWESSKD
CGGLEQARRLVDLVTTSVLLDAGAGDLWKYKEAGTGYEVGRSEGLGVASF
HMFDEGAFSSDPGNFPHRADSTGLKGLADDSVRRAFQVDDAANPLVGCDG
RTQVLKRLGTALDQHPEYFETGGVFRPGNMVDYLLAQAAPGTKTVSIEKV
WEVVMYGFEAIWPAGRTELDGRSMGDVWEHSALPDDGSGWSNLVPFHKLS
QWMTYSLMEPLQQEAGLVLTDKKIMTGLPEYRNGGLLLDLGLLEAKYPGV
TEEPHRPEEEVIVEWRALTVGLLDEVAVALRKKLGKTEEEFPLVKMLEGG
TWKAGRAMAKKLRPETCAPPIQIVSDGTVF*
back to top

mRNA from alignment at S-dermatodea_contig873:3782..10868+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig873.16873.1 ID=mRNA_S-dermatodea_contig873.16873.1|Name=mRNA_S-dermatodea_contig873.16873.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=7087bp|location=Sequence derived from alignment at S-dermatodea_contig873:3782..10868+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTTCAGTCTAGGAGCTGGTGCCTGCTCGAACTGTGCTGGTGCCACGACAC AGCGATGTCAGCTCTTGCCACCGCTCCCGCGGGAACCAGCGATCGCGTCG CGGCTCTTCGCTCCCTCGCTTGCATCCGCGCCCGATGCGGTGTGATCCTC GAGGCGGCGAAATCCGACAGCCTCTCTCACTTCCGAGTAAACCTTGCCAA GGTGGACCACGTCGCGACCTTCGTGCAAGGCCTGATGGATCGAGACTACG CCAGCTACGACGATGTTCCTTATCACTCCCGCTGGAGGCACTTCGAGGCC GGCGCGATCGACCGCACGGCGGGGCTCAAGGAGCGCTGGGAGAGCAGCAA AGATTGCGGCGGTTTGGAGCAGGCGCGGCGGCTTGTCGACTTGGTCACCA CCTCCGTCTTGCTTGACGCGGGGGCGGGGGATCTGTGGAAGTACAAGGAA GCCGGCACGGGGTACGAGGTCGGGCGAAGCGAGGGGCTCGGCGTGGCGAG CTTCCACATGTTCGACGAGGGAGCGTTTTCGAGCGACCCTGGGAATTTCC CGCACCGCGCGGACTCGACTGGGCTGAAGGGCCTTGCGGACGATTCCGTG AGACGGGCCTTTCAGGTCGATGATGCGGCTAACCCCCTCGTCGGGTGCGA TGGTAGAACTCAGGTAAGAGTAAGTGCATAGAGATACGGCTTGATGGACT AACGATGAATACTGCTGTGCCGTGGTGGTTGTTTCCGCTGCTTGGTGGTG ATGGTGGTGGTGGTTGTGGTATTACTCTCGTAGAGTCGATGAATCATGCG CACAGACTGATCTGCTGATGCTGACGATCTGGCGAATGAGCGGGTATAGA TATGATAGGGTCCGCTGACCGCCTTGTCGATAGTCGATCGAACATTGGGT TTGATATTAGGTGTGTCGTTGGTAAAAGCCCATCCCCTCCTGTCACGACA ATGTGCAGTTTGTTGCTGGCACGTAGTTGAACTGTGCAAGACATGCCTCG GTATCTGCGTGGGTCACCACTGCTACTGCTGTAGTGGTGCCTATCATCGC TGTACTATTGTATCGTGCTACATGGCGATATTACAGGCACTGCCCCTCCT TGCGGCTTGTTCGATAAGGTTGAAGTCGAAACTAATGGTTCGTTGATATC GTACACGCATTTGCGTGGTGACTACTCTATACATGTACCTCCTAAAGATC TCAGCGATTTTCCTGGATGTTCTCCTGGATTCTTCTGGATTCTCCTGGGT TCTTTTCATGTTTTCCCCAACGAACTTGAACATAAATACGGCCGTACAAT TAGCTGTAAGCGAGGTTTTTTGTTTTCGCCGCCGCGACAGTTTCAACCCT GGTCACTGTTGGCATCGGCGTTGCGTCGTAGGCGCGAAGTCCCACTATCC AGATGTTACGAGGAGGGTCCTTAATTAGTTGGTCCTGTTGCGGGCGCCAG AGTCTCATCCCGCGTGGGGCAAGACACATGGGCCATTTTACAGTCGTTAC AGCAGTCAGTGACGGGGAAAGTGGTGGTTTGTTGTTTGTGGCGACATTTG CTATTTGGCGATGTCGTCGATCCCTATAGGTGTATGTAAAGACGGCACAT GTCAAGTTGAAGCTGGTGCGTGTTGATGGTGGCTGCGGCACCATACTTCC GTCGGCAATGCATCCGGTGGCCCCACAGCAGTTCCTTCTACACGGAGAGC GGCGACGGCCTAGATTCGGCCCGTTGGAGGTGCTGCAATGTTAAAACGCC AACACGGAACAAGACAGAAGGACTAGACACTGGTGGACCTGTCGTCACTT GGAGCGTAATTGTGTCTCACACGCCACTCGTTGTCCACTCTGCACCAAGT ATGGAATACTGGAACATTGCAAATCACTATAACGGTTCTCTTGTTCCTAA CCCGGAAAATACTGACAATCGGTGCTCGCATATCCAGGTACTAAAGCGGC TCGGGACGGCACTAGATCAACACCCGGAGTACTTCGAGACCGGAGGCGTT TTTAGGCCGGGAAATATGGTGGACTACCTCCTGGCCCAAGCTGCGCCCGG CACAAAGGTAGGTGGATTACCCGCGTGTCGCCTAGGGCGGGTGGCGTTGA AATCTGCGAATACGTTGGCCCCGAGATCTTTCCCGGACACTCCGACGTGG GATGAGCATGGCGAGTTTTGGTACAAGTTGATCGGGCCCATCGAAGTGCA GTCGTAATCGCTCCCGGCGCGGTTGCTCTTTCAAGGAGACGTTTCGAGGA TAGATGCAGTTACGAACACACGTCGCAACATCGGTCCTCCGGTGGAGGCG ACGAATTATCTCATGCCACCATCCATACCACTGTTCTTGATATTACTGTC CCCCTCTCCGCCTTTGCGGCGAAAAGTGGTGAAAGCCTGCATCGTCGCAC AACCTCTGGAGTGCCAGTCCTTCAATTGTCATATCCCCCCCCCCCCCCCT AATCAACCCGTGGCATACCGTTTGGCGTCGCAAACGCAAGGATGATGACT AGCAGCTGGTATGATCCTTGTGAAACGCAGCCTGGCCGGCGAAAACCCTG CATATCGCTCCGTCCCGGCATTGTTGGAACGCGTGGTTTATGTCCTTATG GATACGACATGCGTTTAACATAAGTATAAGTACATCCCCCCCTGAAGACA GTATATATTTATGAACACAGAACTATTAATAGCATTGGGGTCCAACCAAT GTTTTTGGTAGAGAAACAAAGATGACCCAATCTAACTCAGTGGAAGCCTA CATTTTATGCTTCGAAGTACGATGCTATCACCCCCCCCCCCCCCCTGCCC CCAAGGAGCTTCACAATTGAATACGGAGAGTCCTATCATTTTTTTGTGCA AAGCCGCCGTTGCACCCGACCCCCCCCCGCCCCCCCCACCTGCCGCGCAG ACCGTGTCCATCGAGAAGGTGTGGGAAGTGGTGATGTACGGGTTCGAGGC AATATGGCCAGCGGGTAGGACGGAGCTCGACGGACGAAGCATGGGGGACG TGTGGGAGCACTCGGCCCTGCCCGATGATGGCAGCGGCTGGTCGAACCTC GTCCCTTTTCACAAGCTGTCGCAGTGGATGACGTACTCGCTGATGGAGCC GCTGCAGGTGGATGTGCTGCGGGGCCTTGGAGACTAAAGCCGACTGCGTG TGCGGCAGTATGTAGTAATCCGGCGTGGTGTTTTTTGTGCTGGTGGAGAG TGCATACCGCACAGGCGAATCGCATGACCGCATCACGTACCGTTCGTTTC GGTCGGGCGGTCGCAGCTGCCTGCGTGGCACGCTTCCTGCGTTCTGCGAA AAGGTTGTCGGCGTTGTGTAAGTGGTGGCAACTATGTTACCTTCCGTGGA ACCCCCTACGGTGTCCTGGCTGTATGCTGGTTGTTCGCTGGAGCCTGCTG TGTGCAGGCTGGGATGCATTTTTCGTGTGTATGATCGATGACGGATGCTA TGATAAGGCTTGCATAGCGTTGGTCCCTGCGGGGCGGAGCCATTCAGGGC GATCAAACCGGCCTGGCACACCCGGCGGCCTACGCTACATATAACACCAT CTTCTGTAAGGTGGTGGGAAGAAACAGCGGACGAAATATGGCGAGCACTT TGCCCTGTCAATATTTGCCACCTTGAGGTGCCCCCCCCCCGGCATGTTTG CCCGCCTAGCTGCTAGCACTTTGTCAGGAGCACTGCTCATAACCGCCCTT CCCACACAGCTCTTCGGCTTCGCGAGCAAGCCGCGTGTCCCGGCCTACTT TCCCACCCTGCACTCCCCCGTCGATTGTCGCCCCTCTGTGCGCTCCCCGC TGCAGCAAGAGGCTGGGCTCGTCCTCACGGACAAGAAGATTATGACTGGT CTTCCCGAGTATCGCAACGGAGGTCTGCTGCTAGACCTGGGATTGCTCGA GGCTAAGTACCCGGGGGTGACGGAAGAGCCTCACCGCCCGGAGGAGGAGG TGAGCGGTTGAAATCATTGCGGTGTCCTCCCTCTTTTTCACAGCAATAAT TGTGCATTGCTCCCCCCCTCGGTAACGACGCTGTCGGATTTATCGATGTA CTGTTTGAGGAGTGTCTGGATCTAACCACCGAAGCTTCTCCCGTTCGGAA CGCGTGCCGCACGCAACTGCAGGTGATCGTTGAGTGGAGAGCGCTGACGG TGGGCCTACTGGACGAGGTGGCAGTTGCGCTGCGAAAGAAACTGGGCAAG ACCGAAGAAGAGTTCCCATTGGTCAAGGTGCGTCTTTTCTGATACATGAT TGGGCCGATCTGTTAAGCGCTTAAACCACGTACCTTGTGAGTCATTGCTG GTGTTACTTGCTTTTACTGTATGCATACCAGGGCCGTTTTTGTGGTTCTG GTTAACCCTGTTGGTACTGAGTCCAAAAAGGGAGTCATTCGCCCACACCG ATTTGCGCATCGAACAGGTAGAGTGTTAATATTATAGTACAGTATCAATA GTGCATTCTTAATATTAACTAGTAGGTAGCCACGGCGACGCCCGTGAGGT GAGCGACCGCACTAAAAAATCACAAAATCGTATAGAATTTTAGTATACGA AATCGGCCTAAAACATCACAAAAAATCGTATACTTCGAAGTAGGAGTTTT GTGATAAATCGGGCTCAAATCACTACTCTAAATCGCAATTAAAAATGGTT CCTTGTTGTATTAATTGTTAGTATAGTACAGCAGTATTACTAGTACAGTA TGAATAGTACCCGGTCGGTGACTTCTCCTTGCCGTAGTGGCGGCGAAAAC GTGACACCGACCTACAGTGCCACGCTTAGCTCGCACGCACGGCTGTTATC CAACTGTACACATGCCACCGCAATATACCCGTATTAATAGTTGTGACGAT AATTGGCGCTAAAACGGACTCAGTATAGGTTAAATGGCTGCTTTCGCCCC TTTTCGTGAGAGGGCCGGCTTTGCTTCTGTACCAGACCAAACACTACTCA ATCTTGTTTTTAATCGCCGCGATTGTTGCACCGATGGATCTGCTACCAGT GTACGGCTAGCATAAAACACTCCAACTATAGCAGCACCCGGTGTCGCTCA GTATTTGCAACCATCCCGATACGTCGAGGGCGTACCCCAAAGCGTAGGCG TCGTTCCCTGCCCCGAAACAGACGTACTTGACATAAATAATATCACGGGG CGGACCGTTTCTCTTCAACATCTTCCCACATTTTGTCGTTTTCGAATGTA GGATTCAGAAAATACATTTCGTATCCTTAGCGTCCGCATTGACTTATTTG CGCCGTACAATTTTCCCCAAGACTGTGACTGGTGTGGTGGTGTTATCCCG CACGAAGTCCGGTTGGGCAGCTTTGGCGACTAGCGGTGCGGAAAATTCCA TCGGTGTATTGGAGGAGTGCCTGGCGACAGTGGTCTTGCTCATGCTCCTG CTCCACGGCGGACGCTTGGAGTTTGTGTCTTGTCACATAACGACCTTGCT TGGCTTTCTCGGTAGACATGCCATTACCTACCTTTAATATTGCGGAGGTA CAGTAGACAGTTTCTGTAGCAATCAGGACCAAATGTCCCAAAACGTATAC TGTATCCAACATAACTAATCAGAAATGACTGTGATCTGGCCTTGCAGCAC AACGTCCGCAATCTTCCGGCCTGAAATGTCAGTAAAATATACTGGTATAT ACCGTACTTGTATATGTGTTAGAGGTATTCGGGCCAACGTTTAACACAAG AGTTGAGTACGCAATTTTAGCAGAGATTTGGTCCTGATTACTAATATACT AATATTACTGTGTACCTCCATAATAATATAGAGCTACTGTAGTGACTCGA CAAAAACGCCGGACCATTTGACAGACCTTATCCCTCGTACACGTACGAAG GTCACCATGATATGATGATGGGTCTCACATTAACTGATATCATAACCCAG TTGTGGGAGAATTGTAGCACGGGCGATAAAACACGATCCTTTTGTTGTCC GCCCTTTCGCATCCTCCCGCCGCTCCCTTGTCGCGACCGAAACAGATGCT CGAAGGAGGCACTTGGAAGGCAGGGAGAGCGATGGCTAAGAAACTACGGC CAGAAACTTGCGCTCCGCCTATCCAGATAGTCAGCGACGGTACTGTGTTC TGATTGGTAAAAAAAACTTGTTCCGACCAGTGGAGTGTAGTCGAGGCTGC CGCGATGTTGATTTTGTACATGAGGTACGGTCCTCGAAAGGTTTGTGTAT GTTAGGTTTAACCCTCTGCTGTTTTTGGCTGGTCGCGCGGGAACTGGAGG GTGTTATCGAGCAGGCACCTCGTGCAATCCTACCGGGGCGTTTTCGACCG TCCCTTACGTAAGAGGGCAGCCCAATCACGCGTTTTCTGGGAACGTTTGG TATCGTCTAAGAACAATGTCAGCCGAAGTAAGTGATATTTTTGGTACCTT CTGATAACGTTTTGTAACGTCTCACAGGACCTTCTCAGACATGAGTTTGT CGGCCAGTGGGTACGCCCATTTGTGAACAAGATATTTTTATTTTTTCCGA CAGAAACATGTTCGGTGCTGTTCGACATGTTCCGTTCCTCGCTCAGTAGA TCTTCCCGATATCTTTGATGCGATTGTTTCTTTACGATTAGGTGCTCAGT AGTACACGGCTTTCAAAACGACACTATGGCTTGCGAGTTGTTTGACGCTA AGGATTTTGCGGCTAGATCCCTTCCGATGTCTTGATAAGATCGTTGTTTG GGGGTTAGGCCGCGGTAGACATCTCGGCTTCGACAAGGAAGACAGAGTTT TGCGAGGCTGGTAATGCATGCATTTCAGAGTTAGATAGATGTCTACGGTA CACCGCTTTAGACAGGCCGAATCTGCCGTCAGTCCAGGTTCCACTTCACC TTAGAAACGTATCATACCATATCGCTCATCAGATGCCTCCCAGACGATTT TTCCAATATTTGTCTGATCAATTCACAGTCGTATTTGAGAAATCTGGAAA CTTCTCAGACGGTTCTTGAGAATTATGAGAACATATTAATAAAAATGTAT GATTGAAGCTCTGCCGTTATACACATGATGTGAGTGACGGCCTAGGGCAA AGGTTGGCGATTTAACACGCGATTAAGACAGGATGCC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig873:3782..10868+

>mRNA_S-dermatodea_contig873.16873.1 ID=mRNA_S-dermatodea_contig873.16873.1|Name=mRNA_S-dermatodea_contig873.16873.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2586bp|location=Sequence derived from alignment at S-dermatodea_contig873:3782..10868+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCAGCTCTTGCCACCGCTCCCGCGGGAACCAGCGATCGCGTCGCGGC
TCTTCGCTCCCTCGCTTGCATCCGCGCCCGATGCGGTGTGATCCTCGAGG
CGGCGAAATCCGACAGCCTCTCTCACTTCCGAGTAAACCTTGCCAAGGTG
GACCACGTCGCGACCTTCGTGCAAGGCCTGATGGATCGAGACTACGCCAG
CTACGACGATGTTCCTTATCACTCCCGCTGGAGGCACTTCGAGGCCGGCG
CGATCGACCGCACGGCGGGGCTCAAGGAGCGCTGGGAGAGCAGCAAAGAT
TGCGGCGGTTTGGAGCAGGCGCGGCGGCTTGTCGACTTGGTCACCACCTC
CGTCTTGCTTGACGCGGGGGCGGGGGATCTGTGGAAGTACAAGGAAGCCG
GCACGGGGTACGAGGTCGGGCGAAGCGAGGGGCTCGGCGTGGCGAGCTTC
CACATGTTCGACGAGGGAGCGTTTTCGAGCGACCCTGGGAATTTCCCGCA
CCGCGCGGACTCGACTGGGCTGAAGGGCCTTGCGGACGATTCCGTGAGAC
GGGCCTTTCAGGTCGATGATGCGGCTAACCCCCTCGTCGGGTGCGATGGT
AGAACTCAGATGTCAGCTCTTGCCACCGCTCCCGCGGGAACCAGCGATCG
CGTCGCGGCTCTTCGCTCCCTCGCTTGCATCCGCGCCCGATGCGGTGTGA
TCCTCGAGGCGGCGAAATCCGACAGCCTCTCTCACTTCCGAGTAAACCTT
GCCAAGGTGGACCACGTCGCGACCTTCGTGCAAGGCCTGATGGATCGAGA
CTACGCCAGCTACGACGATGTTCCTTATCACTCCCGCTGGAGGCACTTCG
AGGCCGGCGCGATCGACCGCACGGCGGGGCTCAAGGAGCGCTGGGAGAGC
AGCAAAGATTGCGGCGGTTTGGAGCAGGCGCGGCGGCTTGTCGACTTGGT
CACCACCTCCGTCTTGCTTGACGCGGGGGCGGGGGATCTGTGGAAGTACA
AGGAAGCCGGCACGGGGTACGAGGTCGGGCGAAGCGAGGGGCTCGGCGTG
GCGAGCTTCCACATGTTCGACGAGGGAGCGTTTTCGAGCGACCCTGGGAA
TTTCCCGCACCGCGCGGACTCGACTGGGCTGAAGGGCCTTGCGGACGATT
CCGTGAGACGGGCCTTTCAGGTCGATGATGCGGCTAACCCCCTCGTCGGG
TGCGATGGTAGAACTCAGGTACTAAAGCGGCTCGGGACGGCACTAGATCA
ACACCCGGAGTACTTCGAGACCGGAGGCGTTTTTAGGCCGGGAAATATGG
TGGACTACCTCCTGGCCCAAGCTGCGCCCGGCACAAAGGTACTAAAGCGG
CTCGGGACGGCACTAGATCAACACCCGGAGTACTTCGAGACCGGAGGCGT
TTTTAGGCCGGGAAATATGGTGGACTACCTCCTGGCCCAAGCTGCGCCCG
GCACAAAGACCGTGTCCATCGAGAAGGTGTGGGAAGTGGTGATGTACGGG
TTCGAGGCAATATGGCCAGCGGGTAGGACGGAGCTCGACGGACGAAGCAT
GGGGGACGTGTGGGAGCACTCGGCCCTGCCCGATGATGGCAGCGGCTGGT
CGAACCTCGTCCCTTTTCACAAGCTGTCGCAGTGGATGACGTACTCGCTG
ATGGAGCCGCTGCAGACCGTGTCCATCGAGAAGGTGTGGGAAGTGGTGAT
GTACGGGTTCGAGGCAATATGGCCAGCGGGTAGGACGGAGCTCGACGGAC
GAAGCATGGGGGACGTGTGGGAGCACTCGGCCCTGCCCGATGATGGCAGC
GGCTGGTCGAACCTCGTCCCTTTTCACAAGCTGTCGCAGTGGATGACGTA
CTCGCTGATGGAGCCGCTGCAGCAAGAGGCTGGGCTCGTCCTCACGGACA
AGAAGATTATGACTGGTCTTCCCGAGTATCGCAACGGAGGTCTGCTGCTA
GACCTGGGATTGCTCGAGGCTAAGTACCCGGGGGTGACGGAAGAGCCTCA
CCGCCCGGAGGAGGAGCAAGAGGCTGGGCTCGTCCTCACGGACAAGAAGA
TTATGACTGGTCTTCCCGAGTATCGCAACGGAGGTCTGCTGCTAGACCTG
GGATTGCTCGAGGCTAAGTACCCGGGGGTGACGGAAGAGCCTCACCGCCC
GGAGGAGGAGGTGATCGTTGAGTGGAGAGCGCTGACGGTGGGCCTACTGG
ACGAGGTGGCAGTTGCGCTGCGAAAGAAACTGGGCAAGACCGAAGAAGAG
TTCCCATTGGTCAAGGTGATCGTTGAGTGGAGAGCGCTGACGGTGGGCCT
ACTGGACGAGGTGGCAGTTGCGCTGCGAAAGAAACTGGGCAAGACCGAAG
AAGAGTTCCCATTGGTCAAGATGCTCGAAGGAGGCACTTGGAAGGCAGGG
AGAGCGATGGCTAAGAAACTACGGCCAGAAACTTGCGCTCCGCCTATCCA
GATAGTCAGCGACGGTACTGTGTTCTGAATGCTCGAAGGAGGCACTTGGA
AGGCAGGGAGAGCGATGGCTAAGAAACTACGGCCAGAAACTTGCGCTCCG
CCTATCCAGATAGTCAGCGACGGTACTGTGTTCTGA
back to top