mRNA_S-dermatodea_contig87273.16871.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig87273.16871.1
Unique NamemRNA_S-dermatodea_contig87273.16871.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig87273.16871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig87273contigS-dermatodea_contig87273:2..438 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size256
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925362.2131639-CDS-S-dermatodea_contig87273:3..511622925362.2131639-CDS-S-dermatodea_contig87273:3..51Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig87273 4..51 -
1694079881.840214-CDS-S-dermatodea_contig87273:3..511694079881.840214-CDS-S-dermatodea_contig87273:3..51Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig87273 4..51 -
1622925362.2247834-CDS-S-dermatodea_contig87273:234..4381622925362.2247834-CDS-S-dermatodea_contig87273:234..438Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig87273 235..438 -
1694079881.850345-CDS-S-dermatodea_contig87273:234..4381694079881.850345-CDS-S-dermatodea_contig87273:234..438Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig87273 235..438 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig87273.16871.1prot_S-dermatodea_contig87273.16871.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig87273 4..438 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig87273.16871.1

>prot_S-dermatodea_contig87273.16871.1 ID=prot_S-dermatodea_contig87273.16871.1|Name=mRNA_S-dermatodea_contig87273.16871.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=84bp
HVDYVDNNVYGKLEGAHHELLVHGATFKGQADPGARLVAPHEYFRRVPQQ
GNGNCVLTVLLNGAYKTEEFFKKEGDLATARAMF
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mRNA from alignment at S-dermatodea_contig87273:2..438-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig87273.16871.1 ID=mRNA_S-dermatodea_contig87273.16871.1|Name=mRNA_S-dermatodea_contig87273.16871.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=437bp|location=Sequence derived from alignment at S-dermatodea_contig87273:2..438- (Saccorhiza dermatodea SderLu1190fm monoicous)
CACGTCGATTACGTCGACAACAACGTTTACGGGAAACTGGAAGGTGCGCA
CCACGAACTTCTAGTTCATGGCGCCACATTCAAAGGGCAAGCGGACCCCG
GCGCAAGACTTGTTGCACCTCACGAGTATTTTCGTCGTGTGCCGCAACAA
GGGAATGGTAATTGTGTACTTACCGTGCTTCTGAACGGAGCATACAAAAC
CGAGGTACGTCGCCTGAACTGTTTTTCAGGAGTACGACAGGAGTAGGTAG
CAACTGATATTTGTGGTGCTGGAAGCATACGTTGGGTATTTCCTACGCGA
GGTGTACTCGTTTCCTAGCCGCGGAGATTGGAGTGATACATTTATTGAAA
CATATATTCTCCCACTTATCGGCTGTGCGTACTGTAGGAATTCTTCAAGA
AAGAGGGGGACTTGGCGACAGCGAGGGCTATGTTTCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig87273:2..438-

>mRNA_S-dermatodea_contig87273.16871.1 ID=mRNA_S-dermatodea_contig87273.16871.1|Name=mRNA_S-dermatodea_contig87273.16871.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at S-dermatodea_contig87273:2..438- (Saccorhiza dermatodea SderLu1190fm monoicous)
CACGTCGATTACGTCGACAACAACGTTTACGGGAAACTGGAAGGTGCGCA
CCACGAACTTCTAGTTCATGGCGCCACATTCAAAGGGCAAGCGGACCCCG
GCGCAAGACTTGTTGCACCTCACGAGTATTTTCGTCGTGTGCCGCAACAA
GGGAATGGTAATTGTGTACTTACCGTGCTTCTGAACGGAGCATACAAAAC
CGAGCACGTCGATTACGTCGACAACAACGTTTACGGGAAACTGGAAGGTG
CGCACCACGAACTTCTAGTTCATGGCGCCACATTCAAAGGGCAAGCGGAC
CCCGGCGCAAGACTTGTTGCACCTCACGAGTATTTTCGTCGTGTGCCGCA
ACAAGGGAATGGTAATTGTGTACTTACCGTGCTTCTGAACGGAGCATACA
AAACCGAGGAATTCTTCAAGAAAGAGGGGGACTTGGCGACAGCGAGGGCT
ATGTTTGAATTCTTCAAGAAAGAGGGGGACTTGGCGACAGCGAGGGCTAT
GTTT
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