mRNA_S-dermatodea_contig87240.16870.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig87240.16870.1 vs. uniprot
Match: A0A8F0F7M8_9PHAE (Ribosomal protein S11 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7M8_9PHAE) HSP 1 Score: 216 bits (550), Expect = 1.010e-70 Identity = 109/122 (89.34%), Postives = 117/122 (95.90%), Query Frame = 1
Query: 1 KKKNNLDIKTGIMNVHASFNNTIVTISDLNGNTLSWASSGTVDFKGSRKGTPFAAQKAAEEATLKARDEHKLNRVEVVVKGAGPGREPAIRAAYQKGIRIVSIKDDTFIPYNGCRPPKRRRI 366
KKK L IKTGIM+VHASFNNTIVTI+DLNGNTLSWASSGTV+FKGSRKGTPFAAQKAAE+A LKAR+EHKLNRVEVVVKG+GPGREPAIRA +QKGIRIVSIKDDTFIPYNGCRPPKRRR+
Sbjct: 2 KKKTKLYIKTGIMHVHASFNNTIVTITDLNGNTLSWASSGTVEFKGSRKGTPFAAQKAAEQAALKAREEHKLNRVEVVVKGSGPGREPAIRAVHQKGIRIVSIKDDTFIPYNGCRPPKRRRV 123
BLAST of mRNA_S-dermatodea_contig87240.16870.1 vs. uniprot
Match: A0A1I9LVI2_9PHAE (30S ribosomal protein S11, chloroplastic n=36 Tax=Phaeophyceae TaxID=2870 RepID=A0A1I9LVI2_9PHAE) HSP 1 Score: 191 bits (485), Expect = 8.170e-61 Identity = 97/122 (79.51%), Postives = 109/122 (89.34%), Query Frame = 1
Query: 1 KKKNNLDIKTGIMNVHASFNNTIVTISDLNGNTLSWASSGTVDFKGSRKGTPFAAQKAAEEATLKARDEHKLNRVEVVVKGAGPGREPAIRAAYQKGIRIVSIKDDTFIPYNGCRPPKRRRI 366
KKK I TG M++HA+FNNTIVTISDLNGNTLSWASSGTV+FKGSRKGTPFAAQKAAE+A L A++ + L R+EVVVKG+GPGREPAIRA YQKGIR+VSIKD TFIPYNGCRPPKRRR+
Sbjct: 2 KKKIKRTIVTGTMHIHATFNNTIVTISDLNGNTLSWASSGTVNFKGSRKGTPFAAQKAAEKAALIAKESYGLKRLEVVVKGSGPGREPAIRAVYQKGIRVVSIKDVTFIPYNGCRPPKRRRV 123
BLAST of mRNA_S-dermatodea_contig87240.16870.1 vs. uniprot
Match: A0A141BSM1_9PHAE (30S ribosomal protein S11, chloroplastic n=17 Tax=Fucales TaxID=3009 RepID=A0A141BSM1_9PHAE) HSP 1 Score: 180 bits (456), Expect = 2.150e-56 Identity = 90/122 (73.77%), Postives = 107/122 (87.70%), Query Frame = 1
Query: 1 KKKNNLDIKTGIMNVHASFNNTIVTISDLNGNTLSWASSGTVDFKGSRKGTPFAAQKAAEEATLKARDEHKLNRVEVVVKGAGPGREPAIRAAYQKGIRIVSIKDDTFIPYNGCRPPKRRRI 366
KKK I TG M+VHA+FNNTIVT+SDL+GNTLSWAS+GTV+FKGSRK TPFA+QKAAE+A L A+DE+ L R+E+ +KG+GPGRE AIRA YQKGI+IVSIKD+T IPYNGCRPPKRRR+
Sbjct: 2 KKKIKRTIVTGAMHVHATFNNTIVTVSDLDGNTLSWASAGTVNFKGSRKSTPFASQKAAEKAALVAKDEYGLKRLEISIKGSGPGREAAIRAVYQKGIKIVSIKDNTSIPYNGCRPPKRRRV 123
BLAST of mRNA_S-dermatodea_contig87240.16870.1 vs. uniprot
Match: A0A2I4Q2J0_9PHAE (30S ribosomal protein S11, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2J0_9PHAE) HSP 1 Score: 174 bits (440), Expect = 6.680e-54 Identity = 86/122 (70.49%), Postives = 106/122 (86.89%), Query Frame = 1
Query: 1 KKKNNLDIKTGIMNVHASFNNTIVTISDLNGNTLSWASSGTVDFKGSRKGTPFAAQKAAEEATLKARDEHKLNRVEVVVKGAGPGREPAIRAAYQKGIRIVSIKDDTFIPYNGCRPPKRRRI 366
KK NL TG M+VHA+FNNTIVTISD NG+T+SWAS+GTV+FKGSRKGTPFA+QKAAE+A LKA D++ + +V V++KG+GPGREP IRA +QKGIR++SI+D T IP+NGCRPPKRRRI
Sbjct: 6 KKPKNLKGFTGTMHVHATFNNTIVTISDANGDTISWASAGTVNFKGSRKGTPFASQKAAEQAILKAYDDYNVKKVNVILKGSGPGREPCIRAVHQKGIRVLSIEDITAIPHNGCRPPKRRRI 127
BLAST of mRNA_S-dermatodea_contig87240.16870.1 vs. uniprot
Match: A0A8E5XRL6_9PHAE (30S ribosomal protein S11, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRL6_9PHAE) HSP 1 Score: 170 bits (430), Expect = 1.960e-52 Identity = 87/122 (71.31%), Postives = 101/122 (82.79%), Query Frame = 1
Query: 1 KKKNNLDIKTGIMNVHASFNNTIVTISDLNGNTLSWASSGTVDFKGSRKGTPFAAQKAAEEATLKARDEHKLNRVEVVVKGAGPGREPAIRAAYQKGIRIVSIKDDTFIPYNGCRPPKRRRI 366
KKK I TG +++ A++NNTIVTISDLNG T+SW+SSG DF GSRKGTPFAAQKAAEEAT KA+D + L RV+VV+KG GPGREPA+RA +Q GIRI SIKD T IPYNGCRPPKRRR+
Sbjct: 2 KKKIKRTILTGKIHIQATYNNTIVTISDLNGKTISWSSSGNADFTGSRKGTPFAAQKAAEEATRKAKDLYGLKRVDVVIKGPGPGREPAVRAVHQNGIRINSIKDITGIPYNGCRPPKRRRV 123
BLAST of mRNA_S-dermatodea_contig87240.16870.1 vs. uniprot
Match: A0A8E5F964_9PHAE (Ribosomal protein S11 n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E5F964_9PHAE) HSP 1 Score: 152 bits (384), Expect = 2.050e-45 Identity = 72/122 (59.02%), Postives = 99/122 (81.15%), Query Frame = 1
Query: 1 KKKNNLDIKTGIMNVHASFNNTIVTISDLNGNTLSWASSGTVDFKGSRKGTPFAAQKAAEEATLKARDEHKLNRVEVVVKGAGPGREPAIRAAYQKGIRIVSIKDDTFIPYNGCRPPKRRRI 366
++KN ++ GIM +HASFNNTI+TI+DL GNTLSWAS+GTVDFK ++KGT FA+QKA E+A L A+D + + ++++V+KG+GPGRE +IR+ Y KG +I+SIKD T+ P+NGCRPP R I
Sbjct: 3 RRKNRRIVQIGIMYIHASFNNTIITITDLKGNTLSWASAGTVDFKNAKKGTSFASQKAGEKAALIAKDLYGVKQLKIVIKGSGPGRESSIRSVYHKGFQILSIKDRTYSPFNGCRPPNHRSI 124
BLAST of mRNA_S-dermatodea_contig87240.16870.1 vs. uniprot
Match: A0A7U3NQU4_9STRA (30S ribosomal protein S11, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7U3NQU4_9STRA) HSP 1 Score: 148 bits (373), Expect = 1.030e-43 Identity = 73/122 (59.84%), Postives = 97/122 (79.51%), Query Frame = 1
Query: 1 KKKNNLDIKTGIMNVHASFNNTIVTISDLNGNTLSWASSGTVDFKGSRKGTPFAAQKAAEEATLKARDEHKLNRVEVVVKGAGPGREPAIRAAYQKGIRIVSIKDDTFIPYNGCRPPKRRRI 366
KKK ++ TG+ ++ ++FNN I+TI+DL+GNTLSW S+G+ FKGSRK TP+AAQ AAE+AT++ARD + L +VEVV+KG G GRE AIR+ Y G+ I+SI D T +PYNGCRPPKRRR+
Sbjct: 6 KKKGKHNVITGVAHIKSTFNNNIITITDLDGNTLSWGSAGSAGFKGSRKSTPYAAQLAAEKATVQARD-YGLKKVEVVIKGQGSGRETAIRSLYSNGLEIISITDITAVPYNGCRPPKRRRV 126
BLAST of mRNA_S-dermatodea_contig87240.16870.1 vs. uniprot
Match: B7T1W4_VAULI (30S ribosomal protein S11, chloroplastic n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1W4_VAULI) HSP 1 Score: 146 bits (369), Expect = 4.170e-43 Identity = 75/122 (61.48%), Postives = 99/122 (81.15%), Query Frame = 1
Query: 1 KKKNNLDIKTGIMNVHASFNNTIVTISDLNGNTLSWASSGTVDFKGSRKGTPFAAQKAAEEATLKARDEHKLNRVEVVVKGAGPGREPAIRAAYQKGIRIVSIKDDTFIPYNGCRPPKRRRI 366
KKK +I +GI+++H++FNNTI+T++DL GN+++WAS+GT FKG+RKGT FAAQ AA++ATL+A D L +V+V+VKG GPGRE AIRA G++IVSIKD T IPYNGCRPP RRR+
Sbjct: 6 KKKIKRNIPSGIVHIHSTFNNTIITVTDLKGNSVAWASAGTAGFKGTRKGTSFAAQLAAKKATLQAIDSG-LKKVKVLVKGRGPGRETAIRALQTTGVKIVSIKDITPIPYNGCRPPNRRRV 126
BLAST of mRNA_S-dermatodea_contig87240.16870.1 vs. uniprot
Match: A0A662D066_9BACT (30S ribosomal protein S11 n=1 Tax=Candidatus Aerophobetes bacterium TaxID=2030807 RepID=A0A662D066_9BACT) HSP 1 Score: 144 bits (363), Expect = 3.980e-42 Identity = 68/122 (55.74%), Postives = 96/122 (78.69%), Query Frame = 1
Query: 1 KKKNNLDIKTGIMNVHASFNNTIVTISDLNGNTLSWASSGTVDFKGSRKGTPFAAQKAAEEATLKARDEHKLNRVEVVVKGAGPGREPAIRAAYQKGIRIVSIKDDTFIPYNGCRPPKRRRI 366
KKK + ++ G++ +H++FNNTI+TI++LNG+ L W+S+G V FKG++KGTPFAAQK AE+A KA+ E +L RV VVVKG G GRE AIR G++++SIK+ T IP+NGCRPPK+R++
Sbjct: 10 KKKKKIKVEEGVVYIHSTFNNTIITITNLNGDVLCWSSAGGVGFKGTKKGTPFAAQKTAEDAAKKAKGEFQLERVRVVVKGPGSGRETAIRTLQAAGLKVISIKEATPIPHNGCRPPKKRKV 131
BLAST of mRNA_S-dermatodea_contig87240.16870.1 vs. uniprot
Match: A0A523TJB4_9BACT (30S ribosomal protein S11 n=2 Tax=Candidatus Aerophobetes bacterium TaxID=2030807 RepID=A0A523TJB4_9BACT) HSP 1 Score: 143 bits (361), Expect = 8.010e-42 Identity = 70/122 (57.38%), Postives = 94/122 (77.05%), Query Frame = 1
Query: 1 KKKNNLDIKTGIMNVHASFNNTIVTISDLNGNTLSWASSGTVDFKGSRKGTPFAAQKAAEEATLKARDEHKLNRVEVVVKGAGPGREPAIRAAYQKGIRIVSIKDDTFIPYNGCRPPKRRRI 366
KKK + I+ G+ +HA+FNNTI+T+++LNG L W+S+G V FKG++KGTPFAAQK AEE T KA++ +L +V VVVKG G GRE AIR G+R+VSIK+ T IP+NGCRPPK+R++
Sbjct: 10 KKKKKISIEEGMAYIHATFNNTIITLTNLNGEVLCWSSAGQVGFKGTKKGTPFAAQKTAEEITRKAKEGFQLEKVRVVVKGPGSGRETAIRTLQAGGLRVVSIKEATPIPHNGCRPPKKRKV 131 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig87240.16870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig87240.16870.1 >prot_S-dermatodea_contig87240.16870.1 ID=prot_S-dermatodea_contig87240.16870.1|Name=mRNA_S-dermatodea_contig87240.16870.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=123bp KKKNNLDIKTGIMNVHASFNNTIVTISDLNGNTLSWASSGTVDFKGSRKGback to top mRNA from alignment at S-dermatodea_contig87240:213..581+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig87240.16870.1 ID=mRNA_S-dermatodea_contig87240.16870.1|Name=mRNA_S-dermatodea_contig87240.16870.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=369bp|location=Sequence derived from alignment at S-dermatodea_contig87240:213..581+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig87240:213..581+ >mRNA_S-dermatodea_contig87240.16870.1 ID=mRNA_S-dermatodea_contig87240.16870.1|Name=mRNA_S-dermatodea_contig87240.16870.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at S-dermatodea_contig87240:213..581+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |