mRNA_S-dermatodea_contig87240.16870.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig87240.16870.1
Unique NamemRNA_S-dermatodea_contig87240.16870.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig87240.16870.1 vs. uniprot
Match: A0A8F0F7M8_9PHAE (Ribosomal protein S11 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7M8_9PHAE)

HSP 1 Score: 216 bits (550), Expect = 1.010e-70
Identity = 109/122 (89.34%), Postives = 117/122 (95.90%), Query Frame = 1
Query:    1 KKKNNLDIKTGIMNVHASFNNTIVTISDLNGNTLSWASSGTVDFKGSRKGTPFAAQKAAEEATLKARDEHKLNRVEVVVKGAGPGREPAIRAAYQKGIRIVSIKDDTFIPYNGCRPPKRRRI 366
            KKK  L IKTGIM+VHASFNNTIVTI+DLNGNTLSWASSGTV+FKGSRKGTPFAAQKAAE+A LKAR+EHKLNRVEVVVKG+GPGREPAIRA +QKGIRIVSIKDDTFIPYNGCRPPKRRR+
Sbjct:    2 KKKTKLYIKTGIMHVHASFNNTIVTITDLNGNTLSWASSGTVEFKGSRKGTPFAAQKAAEQAALKAREEHKLNRVEVVVKGSGPGREPAIRAVHQKGIRIVSIKDDTFIPYNGCRPPKRRRV 123          
BLAST of mRNA_S-dermatodea_contig87240.16870.1 vs. uniprot
Match: A0A1I9LVI2_9PHAE (30S ribosomal protein S11, chloroplastic n=36 Tax=Phaeophyceae TaxID=2870 RepID=A0A1I9LVI2_9PHAE)

HSP 1 Score: 191 bits (485), Expect = 8.170e-61
Identity = 97/122 (79.51%), Postives = 109/122 (89.34%), Query Frame = 1
Query:    1 KKKNNLDIKTGIMNVHASFNNTIVTISDLNGNTLSWASSGTVDFKGSRKGTPFAAQKAAEEATLKARDEHKLNRVEVVVKGAGPGREPAIRAAYQKGIRIVSIKDDTFIPYNGCRPPKRRRI 366
            KKK    I TG M++HA+FNNTIVTISDLNGNTLSWASSGTV+FKGSRKGTPFAAQKAAE+A L A++ + L R+EVVVKG+GPGREPAIRA YQKGIR+VSIKD TFIPYNGCRPPKRRR+
Sbjct:    2 KKKIKRTIVTGTMHIHATFNNTIVTISDLNGNTLSWASSGTVNFKGSRKGTPFAAQKAAEKAALIAKESYGLKRLEVVVKGSGPGREPAIRAVYQKGIRVVSIKDVTFIPYNGCRPPKRRRV 123          
BLAST of mRNA_S-dermatodea_contig87240.16870.1 vs. uniprot
Match: A0A141BSM1_9PHAE (30S ribosomal protein S11, chloroplastic n=17 Tax=Fucales TaxID=3009 RepID=A0A141BSM1_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 2.150e-56
Identity = 90/122 (73.77%), Postives = 107/122 (87.70%), Query Frame = 1
Query:    1 KKKNNLDIKTGIMNVHASFNNTIVTISDLNGNTLSWASSGTVDFKGSRKGTPFAAQKAAEEATLKARDEHKLNRVEVVVKGAGPGREPAIRAAYQKGIRIVSIKDDTFIPYNGCRPPKRRRI 366
            KKK    I TG M+VHA+FNNTIVT+SDL+GNTLSWAS+GTV+FKGSRK TPFA+QKAAE+A L A+DE+ L R+E+ +KG+GPGRE AIRA YQKGI+IVSIKD+T IPYNGCRPPKRRR+
Sbjct:    2 KKKIKRTIVTGAMHVHATFNNTIVTVSDLDGNTLSWASAGTVNFKGSRKSTPFASQKAAEKAALVAKDEYGLKRLEISIKGSGPGREAAIRAVYQKGIKIVSIKDNTSIPYNGCRPPKRRRV 123          
BLAST of mRNA_S-dermatodea_contig87240.16870.1 vs. uniprot
Match: A0A2I4Q2J0_9PHAE (30S ribosomal protein S11, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2J0_9PHAE)

HSP 1 Score: 174 bits (440), Expect = 6.680e-54
Identity = 86/122 (70.49%), Postives = 106/122 (86.89%), Query Frame = 1
Query:    1 KKKNNLDIKTGIMNVHASFNNTIVTISDLNGNTLSWASSGTVDFKGSRKGTPFAAQKAAEEATLKARDEHKLNRVEVVVKGAGPGREPAIRAAYQKGIRIVSIKDDTFIPYNGCRPPKRRRI 366
            KK  NL   TG M+VHA+FNNTIVTISD NG+T+SWAS+GTV+FKGSRKGTPFA+QKAAE+A LKA D++ + +V V++KG+GPGREP IRA +QKGIR++SI+D T IP+NGCRPPKRRRI
Sbjct:    6 KKPKNLKGFTGTMHVHATFNNTIVTISDANGDTISWASAGTVNFKGSRKGTPFASQKAAEQAILKAYDDYNVKKVNVILKGSGPGREPCIRAVHQKGIRVLSIEDITAIPHNGCRPPKRRRI 127          
BLAST of mRNA_S-dermatodea_contig87240.16870.1 vs. uniprot
Match: A0A8E5XRL6_9PHAE (30S ribosomal protein S11, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRL6_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 1.960e-52
Identity = 87/122 (71.31%), Postives = 101/122 (82.79%), Query Frame = 1
Query:    1 KKKNNLDIKTGIMNVHASFNNTIVTISDLNGNTLSWASSGTVDFKGSRKGTPFAAQKAAEEATLKARDEHKLNRVEVVVKGAGPGREPAIRAAYQKGIRIVSIKDDTFIPYNGCRPPKRRRI 366
            KKK    I TG +++ A++NNTIVTISDLNG T+SW+SSG  DF GSRKGTPFAAQKAAEEAT KA+D + L RV+VV+KG GPGREPA+RA +Q GIRI SIKD T IPYNGCRPPKRRR+
Sbjct:    2 KKKIKRTILTGKIHIQATYNNTIVTISDLNGKTISWSSSGNADFTGSRKGTPFAAQKAAEEATRKAKDLYGLKRVDVVIKGPGPGREPAVRAVHQNGIRINSIKDITGIPYNGCRPPKRRRV 123          
BLAST of mRNA_S-dermatodea_contig87240.16870.1 vs. uniprot
Match: A0A8E5F964_9PHAE (Ribosomal protein S11 n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E5F964_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 2.050e-45
Identity = 72/122 (59.02%), Postives = 99/122 (81.15%), Query Frame = 1
Query:    1 KKKNNLDIKTGIMNVHASFNNTIVTISDLNGNTLSWASSGTVDFKGSRKGTPFAAQKAAEEATLKARDEHKLNRVEVVVKGAGPGREPAIRAAYQKGIRIVSIKDDTFIPYNGCRPPKRRRI 366
            ++KN   ++ GIM +HASFNNTI+TI+DL GNTLSWAS+GTVDFK ++KGT FA+QKA E+A L A+D + + ++++V+KG+GPGRE +IR+ Y KG +I+SIKD T+ P+NGCRPP  R I
Sbjct:    3 RRKNRRIVQIGIMYIHASFNNTIITITDLKGNTLSWASAGTVDFKNAKKGTSFASQKAGEKAALIAKDLYGVKQLKIVIKGSGPGRESSIRSVYHKGFQILSIKDRTYSPFNGCRPPNHRSI 124          
BLAST of mRNA_S-dermatodea_contig87240.16870.1 vs. uniprot
Match: A0A7U3NQU4_9STRA (30S ribosomal protein S11, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7U3NQU4_9STRA)

HSP 1 Score: 148 bits (373), Expect = 1.030e-43
Identity = 73/122 (59.84%), Postives = 97/122 (79.51%), Query Frame = 1
Query:    1 KKKNNLDIKTGIMNVHASFNNTIVTISDLNGNTLSWASSGTVDFKGSRKGTPFAAQKAAEEATLKARDEHKLNRVEVVVKGAGPGREPAIRAAYQKGIRIVSIKDDTFIPYNGCRPPKRRRI 366
            KKK   ++ TG+ ++ ++FNN I+TI+DL+GNTLSW S+G+  FKGSRK TP+AAQ AAE+AT++ARD + L +VEVV+KG G GRE AIR+ Y  G+ I+SI D T +PYNGCRPPKRRR+
Sbjct:    6 KKKGKHNVITGVAHIKSTFNNNIITITDLDGNTLSWGSAGSAGFKGSRKSTPYAAQLAAEKATVQARD-YGLKKVEVVIKGQGSGRETAIRSLYSNGLEIISITDITAVPYNGCRPPKRRRV 126          
BLAST of mRNA_S-dermatodea_contig87240.16870.1 vs. uniprot
Match: B7T1W4_VAULI (30S ribosomal protein S11, chloroplastic n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1W4_VAULI)

HSP 1 Score: 146 bits (369), Expect = 4.170e-43
Identity = 75/122 (61.48%), Postives = 99/122 (81.15%), Query Frame = 1
Query:    1 KKKNNLDIKTGIMNVHASFNNTIVTISDLNGNTLSWASSGTVDFKGSRKGTPFAAQKAAEEATLKARDEHKLNRVEVVVKGAGPGREPAIRAAYQKGIRIVSIKDDTFIPYNGCRPPKRRRI 366
            KKK   +I +GI+++H++FNNTI+T++DL GN+++WAS+GT  FKG+RKGT FAAQ AA++ATL+A D   L +V+V+VKG GPGRE AIRA    G++IVSIKD T IPYNGCRPP RRR+
Sbjct:    6 KKKIKRNIPSGIVHIHSTFNNTIITVTDLKGNSVAWASAGTAGFKGTRKGTSFAAQLAAKKATLQAIDSG-LKKVKVLVKGRGPGRETAIRALQTTGVKIVSIKDITPIPYNGCRPPNRRRV 126          
BLAST of mRNA_S-dermatodea_contig87240.16870.1 vs. uniprot
Match: A0A662D066_9BACT (30S ribosomal protein S11 n=1 Tax=Candidatus Aerophobetes bacterium TaxID=2030807 RepID=A0A662D066_9BACT)

HSP 1 Score: 144 bits (363), Expect = 3.980e-42
Identity = 68/122 (55.74%), Postives = 96/122 (78.69%), Query Frame = 1
Query:    1 KKKNNLDIKTGIMNVHASFNNTIVTISDLNGNTLSWASSGTVDFKGSRKGTPFAAQKAAEEATLKARDEHKLNRVEVVVKGAGPGREPAIRAAYQKGIRIVSIKDDTFIPYNGCRPPKRRRI 366
            KKK  + ++ G++ +H++FNNTI+TI++LNG+ L W+S+G V FKG++KGTPFAAQK AE+A  KA+ E +L RV VVVKG G GRE AIR     G++++SIK+ T IP+NGCRPPK+R++
Sbjct:   10 KKKKKIKVEEGVVYIHSTFNNTIITITNLNGDVLCWSSAGGVGFKGTKKGTPFAAQKTAEDAAKKAKGEFQLERVRVVVKGPGSGRETAIRTLQAAGLKVISIKEATPIPHNGCRPPKKRKV 131          
BLAST of mRNA_S-dermatodea_contig87240.16870.1 vs. uniprot
Match: A0A523TJB4_9BACT (30S ribosomal protein S11 n=2 Tax=Candidatus Aerophobetes bacterium TaxID=2030807 RepID=A0A523TJB4_9BACT)

HSP 1 Score: 143 bits (361), Expect = 8.010e-42
Identity = 70/122 (57.38%), Postives = 94/122 (77.05%), Query Frame = 1
Query:    1 KKKNNLDIKTGIMNVHASFNNTIVTISDLNGNTLSWASSGTVDFKGSRKGTPFAAQKAAEEATLKARDEHKLNRVEVVVKGAGPGREPAIRAAYQKGIRIVSIKDDTFIPYNGCRPPKRRRI 366
            KKK  + I+ G+  +HA+FNNTI+T+++LNG  L W+S+G V FKG++KGTPFAAQK AEE T KA++  +L +V VVVKG G GRE AIR     G+R+VSIK+ T IP+NGCRPPK+R++
Sbjct:   10 KKKKKISIEEGMAYIHATFNNTIITLTNLNGEVLCWSSAGQVGFKGTKKGTPFAAQKTAEEITRKAKEGFQLEKVRVVVKGPGSGRETAIRTLQAGGLRVVSIKEATPIPHNGCRPPKKRKV 131          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig87240.16870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0F7M8_9PHAE1.010e-7089.34Ribosomal protein S11 n=1 Tax=Protohalopteris sp. ... [more]
A0A1I9LVI2_9PHAE8.170e-6179.5130S ribosomal protein S11, chloroplastic n=36 Tax=... [more]
A0A141BSM1_9PHAE2.150e-5673.7730S ribosomal protein S11, chloroplastic n=17 Tax=... [more]
A0A2I4Q2J0_9PHAE6.680e-5470.4930S ribosomal protein S11, chloroplastic n=1 Tax=D... [more]
A0A8E5XRL6_9PHAE1.960e-5271.3130S ribosomal protein S11, chloroplastic n=1 Tax=I... [more]
A0A8E5F964_9PHAE2.050e-4559.02Ribosomal protein S11 n=1 Tax=Phaeophyceae sp. Tax... [more]
A0A7U3NQU4_9STRA1.030e-4359.8430S ribosomal protein S11, chloroplastic n=1 Tax=S... [more]
B7T1W4_VAULI4.170e-4361.4830S ribosomal protein S11, chloroplastic n=1 Tax=V... [more]
A0A662D066_9BACT3.980e-4255.7430S ribosomal protein S11 n=1 Tax=Candidatus Aerop... [more]
A0A523TJB4_9BACT8.010e-4257.3830S ribosomal protein S11 n=2 Tax=Candidatus Aerop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig87240contigS-dermatodea_contig87240:213..581 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score194.9
Seed ortholog evalue2.2e-47
Seed eggNOG ortholog2880.D1J732
Preferred namerps11
KEGG rclassRC02795
KEGG koko:K03040
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020
KEGG ModuleM00183
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.rRNA binding
EggNOG OGsCOG0100@1,KOG0408@2759
EC2.7.7.6
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size369
Cds size369
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925362.170547-CDS-S-dermatodea_contig87240:212..5811622925362.170547-CDS-S-dermatodea_contig87240:212..581Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig87240 213..581 +
1694079881.8272202-CDS-S-dermatodea_contig87240:212..5811694079881.8272202-CDS-S-dermatodea_contig87240:212..581Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig87240 213..581 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig87240.16870.1prot_S-dermatodea_contig87240.16870.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig87240 213..581 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig87240.16870.1

>prot_S-dermatodea_contig87240.16870.1 ID=prot_S-dermatodea_contig87240.16870.1|Name=mRNA_S-dermatodea_contig87240.16870.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=123bp
KKKNNLDIKTGIMNVHASFNNTIVTISDLNGNTLSWASSGTVDFKGSRKG
TPFAAQKAAEEATLKARDEHKLNRVEVVVKGAGPGREPAIRAAYQKGIRI
VSIKDDTFIPYNGCRPPKRRRI*
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mRNA from alignment at S-dermatodea_contig87240:213..581+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig87240.16870.1 ID=mRNA_S-dermatodea_contig87240.16870.1|Name=mRNA_S-dermatodea_contig87240.16870.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=369bp|location=Sequence derived from alignment at S-dermatodea_contig87240:213..581+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AAAAAAAAAAATAACTTAGATATTAAAACCGGAATAATGAATGTCCATGC AAGTTTTAATAATACAATTGTAACAATAAGTGACTTAAATGGAAATACAC TATCTTGGGCATCTTCAGGTACTGTTGATTTTAAAGGATCAAGAAAAGGG ACTCCATTTGCAGCACAAAAAGCTGCAGAGGAAGCTACATTAAAGGCTCG TGATGAACATAAACTTAACAGAGTTGAAGTTGTCGTCAAAGGAGCTGGGC CAGGTCGAGAACCTGCAATTCGAGCAGCATACCAGAAAGGAATACGTATT GTATCTATTAAAGATGATACATTTATACCTTATAATGGTTGTCGTCCACC TAAGCGTCGAAGAATTTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig87240:213..581+

>mRNA_S-dermatodea_contig87240.16870.1 ID=mRNA_S-dermatodea_contig87240.16870.1|Name=mRNA_S-dermatodea_contig87240.16870.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at S-dermatodea_contig87240:213..581+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AAAAAAAAAAATAACTTAGATATTAAAACCGGAATAATGAATGTCCATGC
AAGTTTTAATAATACAATTGTAACAATAAGTGACTTAAATGGAAATACAC
TATCTTGGGCATCTTCAGGTACTGTTGATTTTAAAGGATCAAGAAAAGGG
ACTCCATTTGCAGCACAAAAAGCTGCAGAGGAAGCTACATTAAAGGCTCG
TGATGAACATAAACTTAACAGAGTTGAAGTTGTCGTCAAAGGAGCTGGGC
CAGGTCGAGAACCTGCAATTCGAGCAGCATACCAGAAAGGAATACGTATT
GTATCTATTAAAGATGATACATTTATACCTTATAATGGTTGTCGTCCACC
TAAGCGTCGAAGAATTTAAAAAAAAAAAAATAACTTAGATATTAAAACCG
GAATAATGAATGTCCATGCAAGTTTTAATAATACAATTGTAACAATAAGT
GACTTAAATGGAAATACACTATCTTGGGCATCTTCAGGTACTGTTGATTT
TAAAGGATCAAGAAAAGGGACTCCATTTGCAGCACAAAAAGCTGCAGAGG
AAGCTACATTAAAGGCTCGTGATGAACATAAACTTAACAGAGTTGAAGTT
GTCGTCAAAGGAGCTGGGCCAGGTCGAGAACCTGCAATTCGAGCAGCATA
CCAGAAAGGAATACGTATTGTATCTATTAAAGATGATACATTTATACCTT
ATAATGGTTGTCGTCCACCTAAGCGTCGAAGAATTTAA
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