prot_S-dermatodea_contig87240.16869.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig87240.16869.1
Unique Nameprot_S-dermatodea_contig87240.16869.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length42
Homology
BLAST of mRNA_S-dermatodea_contig87240.16869.1 vs. uniprot
Match: D1J733_ECTSI (30S ribosomal protein S13, chloroplastic n=6 Tax=Ectocarpales TaxID=2877 RepID=D1J733_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 7.970e-16
Identity = 38/41 (92.68%), Postives = 40/41 (97.56%), Query Frame = 0
Query:    1 MKNGSIKGRRHRAGLPVRGQRTRTNGRTKRGGKKTVAGKKK 41
            M+NGSIKGRRHRAGLPVRGQRTRTNGRT+RGGKKTVAGK K
Sbjct:   86 MENGSIKGRRHRAGLPVRGQRTRTNGRTRRGGKKTVAGKNK 126          
BLAST of mRNA_S-dermatodea_contig87240.16869.1 vs. uniprot
Match: A0A6B7EUU3_9PHAE (30S ribosomal protein S13 n=3 Tax=Phaeophyceae TaxID=2870 RepID=A0A6B7EUU3_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 7.970e-16
Identity = 38/41 (92.68%), Postives = 40/41 (97.56%), Query Frame = 0
Query:    1 MKNGSIKGRRHRAGLPVRGQRTRTNGRTKRGGKKTVAGKKK 41
            M+NGSIKGRRHRAGLPVRGQRTRTNGRT+RGGKKTVAGK K
Sbjct:   86 MENGSIKGRRHRAGLPVRGQRTRTNGRTRRGGKKTVAGKNK 126          
BLAST of mRNA_S-dermatodea_contig87240.16869.1 vs. uniprot
Match: A0A141BSM2_9PHAE (30S ribosomal protein S13, chloroplastic n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSM2_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.130e-15
Identity = 38/41 (92.68%), Postives = 40/41 (97.56%), Query Frame = 0
Query:    1 MKNGSIKGRRHRAGLPVRGQRTRTNGRTKRGGKKTVAGKKK 41
            M+NGSIKGRRHRAGLPVRGQRTRTN RT+RGGKKTVAGKKK
Sbjct:   86 MENGSIKGRRHRAGLPVRGQRTRTNARTRRGGKKTVAGKKK 126          
BLAST of mRNA_S-dermatodea_contig87240.16869.1 vs. uniprot
Match: A0A8F0JX21_9PHAE (Ribosomal protein S13 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JX21_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 2.270e-15
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 0
Query:    1 MKNGSIKGRRHRAGLPVRGQRTRTNGRTKRGGKKTVAGKKK 41
            M+NGSIKGRRHR GLPVRGQRTRTN RTKRGGKKT+AGKKK
Sbjct:   86 MENGSIKGRRHRVGLPVRGQRTRTNARTKRGGKKTIAGKKK 126          
BLAST of mRNA_S-dermatodea_contig87240.16869.1 vs. uniprot
Match: A0A0R6LUW3_UNDPI (30S ribosomal protein S13, chloroplastic n=26 Tax=Laminariales TaxID=2886 RepID=A0A0R6LUW3_UNDPI)

HSP 1 Score: 71.6 bits (174), Expect = 6.450e-15
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 0
Query:    1 MKNGSIKGRRHRAGLPVRGQRTRTNGRTKRGGKKTVAGKKK 41
            M+NGSIKGRRHRAGLPVRGQRTRTN RT+RGGKKTVAGK K
Sbjct:   86 MENGSIKGRRHRAGLPVRGQRTRTNARTRRGGKKTVAGKNK 126          
BLAST of mRNA_S-dermatodea_contig87240.16869.1 vs. uniprot
Match: A0A2R4QQ15_9PHAE (30S ribosomal protein S13 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QQ15_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 9.140e-15
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 0
Query:    1 MKNGSIKGRRHRAGLPVRGQRTRTNGRTKRGGKKTVAGKKK 41
            M+NGSIKGRRHRAGLPVRGQRTRTN RT+RG KKTVAGKKK
Sbjct:   86 MENGSIKGRRHRAGLPVRGQRTRTNARTRRGSKKTVAGKKK 126          
BLAST of mRNA_S-dermatodea_contig87240.16869.1 vs. uniprot
Match: A0A1I9LVX4_9PHAE (30S ribosomal protein S13, chloroplastic n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVX4_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 5.950e-13
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 0
Query:    1 MKNGSIKGRRHRAGLPVRGQRTRTNGRTKRGGKKTVAGKKK 41
            M+NGSIKGRRHRAGLPVRGQRTRTNGRT+RG KK V GK K
Sbjct:   86 MENGSIKGRRHRAGLPVRGQRTRTNGRTRRGVKKIVVGKNK 126          
BLAST of mRNA_S-dermatodea_contig87240.16869.1 vs. uniprot
Match: A0A8F0FB58_9PHAE (Ribosomal protein S13 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FB58_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 8.420e-13
Identity = 34/41 (82.93%), Postives = 36/41 (87.80%), Query Frame = 0
Query:    1 MKNGSIKGRRHRAGLPVRGQRTRTNGRTKRGGKKTVAGKKK 41
            M+NGSIKGRRHR GLPVRGQRTRTN RT+RG KK V GKKK
Sbjct:   86 MENGSIKGRRHRVGLPVRGQRTRTNARTRRGAKKAVVGKKK 126          
BLAST of mRNA_S-dermatodea_contig87240.16869.1 vs. uniprot
Match: UPI001FCD7C5A (ribosomal protein S13 n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=UPI001FCD7C5A)

HSP 1 Score: 65.9 bits (159), Expect = 1.190e-12
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = 0
Query:    1 MKNGSIKGRRHRAGLPVRGQRTRTNGRTKRGGKKTVAGKKK 41
            M NGSI+GRRHR GLPVRGQRTRTN RT+RG K+TVAGKKK
Sbjct:   82 MDNGSIRGRRHRNGLPVRGQRTRTNARTRRGSKRTVAGKKK 122          
BLAST of mRNA_S-dermatodea_contig87240.16869.1 vs. uniprot
Match: UPI001FCDACEB (ribosomal protein S13 n=1 Tax=Erythrolobus coxiae TaxID=362235 RepID=UPI001FCDACEB)

HSP 1 Score: 65.9 bits (159), Expect = 1.190e-12
Identity = 33/41 (80.49%), Postives = 38/41 (92.68%), Query Frame = 0
Query:    1 MKNGSIKGRRHRAGLPVRGQRTRTNGRTKRGGKKTVAGKKK 41
            M+NG I+GRRHRAGLP+RGQRTRTN RT+RG K+TVAGKKK
Sbjct:   82 MENGCIRGRRHRAGLPLRGQRTRTNARTRRGSKRTVAGKKK 122          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig87240.16869.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J733_ECTSI7.970e-1692.6830S ribosomal protein S13, chloroplastic n=6 Tax=E... [more]
A0A6B7EUU3_9PHAE7.970e-1692.6830S ribosomal protein S13 n=3 Tax=Phaeophyceae Tax... [more]
A0A141BSM2_9PHAE1.130e-1592.6830S ribosomal protein S13, chloroplastic n=14 Tax=... [more]
A0A8F0JX21_9PHAE2.270e-1590.24Ribosomal protein S13 n=1 Tax=Protohalopteris sp. ... [more]
A0A0R6LUW3_UNDPI6.450e-1590.2430S ribosomal protein S13, chloroplastic n=26 Tax=... [more]
A0A2R4QQ15_9PHAE9.140e-1590.2430S ribosomal protein S13 n=3 Tax=Fucaceae TaxID=3... [more]
A0A1I9LVX4_9PHAE5.950e-1385.3730S ribosomal protein S13, chloroplastic n=1 Tax=P... [more]
A0A8F0FB58_9PHAE8.420e-1382.93Ribosomal protein S13 n=1 Tax=Desmarestia aculeata... [more]
UPI001FCD7C5A1.190e-1282.93ribosomal protein S13 n=1 Tax=Timspurckia oligopyr... [more]
UPI001FCDACEB1.190e-1280.49ribosomal protein S13 n=1 Tax=Erythrolobus coxiae ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR02743730s ribosomal protein S13, C-terminalGENE3D4.10.910.10coord: 1..41
e-value: 2.1E-15
score: 57.9
IPR001892Ribosomal protein S13PFAMPF00416Ribosomal_S13coord: 3..28
e-value: 2.7E-7
score: 31.0
IPR001892Ribosomal protein S13PROSITEPS50159RIBOSOMAL_S13_2coord: 1..31
score: 15.065
NoneNo IPR availablePANTHERPTHR1087130S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18coord: 4..41
IPR019980Ribosomal protein S13, bacterial-typePANTHERPTHR10871:SF137S RIBOSOMAL PROTEIN SWS2, MITOCHONDRIALcoord: 4..41
IPR018269Ribosomal protein S13, conserved sitePROSITEPS00646RIBOSOMAL_S13_1coord: 7..20
IPR010979Ribosomal protein S13-like, H2THSUPERFAMILY46946S13-like H2TH domaincoord: 1..40

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig87240contigS-dermatodea_contig87240:44..169 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig87240.16869.1mRNA_S-dermatodea_contig87240.16869.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig87240 26..169 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig87240.16869.1 ID=prot_S-dermatodea_contig87240.16869.1|Name=mRNA_S-dermatodea_contig87240.16869.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=42bp
MKNGSIKGRRHRAGLPVRGQRTRTNGRTKRGGKKTVAGKKK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR02743730s_Rbsml_prot_S13_C
IPR001892Ribosomal_S13
IPR019980Ribosomal_S13_bac-type
IPR018269Ribosomal_S13_CS
IPR010979Ribosomal_S13-like_H2TH