mRNA_S-dermatodea_contig87240.16869.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig87240.16869.1
Unique NamemRNA_S-dermatodea_contig87240.16869.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig87240.16869.1 vs. uniprot
Match: D1J733_ECTSI (30S ribosomal protein S13, chloroplastic n=6 Tax=Ectocarpales TaxID=2877 RepID=D1J733_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 1.370e-18
Identity = 42/47 (89.36%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:    1 LSINRLMKNGSIKGRRHRAGLPVRGQRTRTNGRTKRGGKKTVAGKKK 141
            L+I RLM+NGSIKGRRHRAGLPVRGQRTRTNGRT+RGGKKTVAGK K
Sbjct:   80 LNIKRLMENGSIKGRRHRAGLPVRGQRTRTNGRTRRGGKKTVAGKNK 126
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BLAST of mRNA_S-dermatodea_contig87240.16869.1 vs. uniprot
Match: A0A6B7EUU3_9PHAE (30S ribosomal protein S13 n=3 Tax=Phaeophyceae TaxID=2870 RepID=A0A6B7EUU3_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 1.370e-18
Identity = 42/47 (89.36%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:    1 LSINRLMKNGSIKGRRHRAGLPVRGQRTRTNGRTKRGGKKTVAGKKK 141
            L+I RLM+NGSIKGRRHRAGLPVRGQRTRTNGRT+RGGKKTVAGK K
Sbjct:   80 LNIKRLMENGSIKGRRHRAGLPVRGQRTRTNGRTRRGGKKTVAGKNK 126
[Close]
BLAST of mRNA_S-dermatodea_contig87240.16869.1 vs. uniprot
Match: A0A8F0JX21_9PHAE (Ribosomal protein S13 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JX21_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 1.370e-18
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:    1 LSINRLMKNGSIKGRRHRAGLPVRGQRTRTNGRTKRGGKKTVAGKKK 141
            LSI RLM+NGSIKGRRHR GLPVRGQRTRTN RTKRGGKKT+AGKKK
Sbjct:   80 LSIKRLMENGSIKGRRHRVGLPVRGQRTRTNARTKRGGKKTIAGKKK 126
[Close]
BLAST of mRNA_S-dermatodea_contig87240.16869.1 vs. uniprot
Match: A0A141BSM2_9PHAE (30S ribosomal protein S13, chloroplastic n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSM2_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.940e-18
Identity = 42/47 (89.36%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:    1 LSINRLMKNGSIKGRRHRAGLPVRGQRTRTNGRTKRGGKKTVAGKKK 141
            L+I RLM+NGSIKGRRHRAGLPVRGQRTRTN RT+RGGKKTVAGKKK
Sbjct:   80 LNIKRLMENGSIKGRRHRAGLPVRGQRTRTNARTRRGGKKTVAGKKK 126
[Close]
BLAST of mRNA_S-dermatodea_contig87240.16869.1 vs. uniprot
Match: A0A0R6LUW3_UNDPI (30S ribosomal protein S13, chloroplastic n=26 Tax=Laminariales TaxID=2886 RepID=A0A0R6LUW3_UNDPI)

HSP 1 Score: 79.0 bits (193), Expect = 1.110e-17
Identity = 41/47 (87.23%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:    1 LSINRLMKNGSIKGRRHRAGLPVRGQRTRTNGRTKRGGKKTVAGKKK 141
            L+I RLM+NGSIKGRRHRAGLPVRGQRTRTN RT+RGGKKTVAGK K
Sbjct:   80 LNIKRLMENGSIKGRRHRAGLPVRGQRTRTNARTRRGGKKTVAGKNK 126
[Close]
BLAST of mRNA_S-dermatodea_contig87240.16869.1 vs. uniprot
Match: A0A2R4QQ15_9PHAE (30S ribosomal protein S13 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QQ15_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 1.580e-17
Identity = 41/47 (87.23%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:    1 LSINRLMKNGSIKGRRHRAGLPVRGQRTRTNGRTKRGGKKTVAGKKK 141
            L+I RLM+NGSIKGRRHRAGLPVRGQRTRTN RT+RG KKTVAGKKK
Sbjct:   80 LNIKRLMENGSIKGRRHRAGLPVRGQRTRTNARTRRGSKKTVAGKKK 126
[Close]
BLAST of mRNA_S-dermatodea_contig87240.16869.1 vs. uniprot
Match: A0A1I9LVX4_9PHAE (30S ribosomal protein S13, chloroplastic n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVX4_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.030e-15
Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:    1 LSINRLMKNGSIKGRRHRAGLPVRGQRTRTNGRTKRGGKKTVAGKKK 141
            L+I RLM+NGSIKGRRHRAGLPVRGQRTRTNGRT+RG KK V GK K
Sbjct:   80 LNIKRLMENGSIKGRRHRAGLPVRGQRTRTNGRTRRGVKKIVVGKNK 126
[Close]
BLAST of mRNA_S-dermatodea_contig87240.16869.1 vs. uniprot
Match: A0A8F0FB58_9PHAE (Ribosomal protein S13 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FB58_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.470e-15
Identity = 38/47 (80.85%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:    1 LSINRLMKNGSIKGRRHRAGLPVRGQRTRTNGRTKRGGKKTVAGKKK 141
            L+I RLM+NGSIKGRRHR GLPVRGQRTRTN RT+RG KK V GKKK
Sbjct:   80 LNIKRLMENGSIKGRRHRVGLPVRGQRTRTNARTRRGAKKAVVGKKK 126
[Close]
BLAST of mRNA_S-dermatodea_contig87240.16869.1 vs. uniprot
Match: A0A4D6WPX9_9FLOR (Ribosomal protein S13 n=1 Tax=Bornetia secundiflora TaxID=2575637 RepID=A0A4D6WPX9_9FLOR)

HSP 1 Score: 73.2 bits (178), Expect = 2.080e-15
Identity = 38/47 (80.85%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:    1 LSINRLMKNGSIKGRRHRAGLPVRGQRTRTNGRTKRGGKKTVAGKKK 141
            LSI RLM+ GS KGRRHR GLP+RGQRTRTN RT+RGGKKT+AGKKK
Sbjct:   76 LSIKRLMEIGSYKGRRHRLGLPLRGQRTRTNARTRRGGKKTIAGKKK 122
[Close]
BLAST of mRNA_S-dermatodea_contig87240.16869.1 vs. uniprot
Match: UPI001FCD7C5A (ribosomal protein S13 n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=UPI001FCD7C5A)

HSP 1 Score: 73.2 bits (178), Expect = 2.080e-15
Identity = 38/47 (80.85%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:    1 LSINRLMKNGSIKGRRHRAGLPVRGQRTRTNGRTKRGGKKTVAGKKK 141
            L+I RLM NGSI+GRRHR GLPVRGQRTRTN RT+RG K+TVAGKKK
Sbjct:   76 LNIKRLMDNGSIRGRRHRNGLPVRGQRTRTNARTRRGSKRTVAGKKK 122
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig87240.16869.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J733_ECTSI1.370e-1889.3630S ribosomal protein S13, chloroplastic n=6 Tax=E... [more]
A0A6B7EUU3_9PHAE1.370e-1889.3630S ribosomal protein S13 n=3 Tax=Phaeophyceae Tax... [more]
A0A8F0JX21_9PHAE1.370e-1889.36Ribosomal protein S13 n=1 Tax=Protohalopteris sp. ... [more]
A0A141BSM2_9PHAE1.940e-1889.3630S ribosomal protein S13, chloroplastic n=14 Tax=... [more]
A0A0R6LUW3_UNDPI1.110e-1787.2330S ribosomal protein S13, chloroplastic n=26 Tax=... [more]
A0A2R4QQ15_9PHAE1.580e-1787.2330S ribosomal protein S13 n=3 Tax=Fucaceae TaxID=3... [more]
A0A1I9LVX4_9PHAE1.030e-1582.9830S ribosomal protein S13, chloroplastic n=1 Tax=P... [more]
A0A8F0FB58_9PHAE1.470e-1580.85Ribosomal protein S13 n=1 Tax=Desmarestia aculeata... [more]
A0A4D6WPX9_9FLOR2.080e-1580.85Ribosomal protein S13 n=1 Tax=Bornetia secundiflor... [more]
UPI001FCD7C5A2.080e-1580.85ribosomal protein S13 n=1 Tax=Timspurckia oligopyr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig87240contigS-dermatodea_contig87240:26..169 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.3
Seed ortholog evalue1.5e-11
Seed eggNOG ortholog2880.D1J733
Preferred namerps13
KEGG rclassRC02795
KEGG koko:K02952,ko:K03040
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03010,ko03020,map00230,map00240,map01100,map03010,map03020
KEGG ModuleM00178,M00179,M00183
GOsGO:0000313,GO:0000314,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005763,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022613,GO:0031967,GO:0031974,GO:0031975,GO:0032543,GO:0032991,GO:0034641,GO:0034645,GO:0042254,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:0071840,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.rRNA binding
EggNOG OGsCOG0099@1,KOG3311@2759
EC2.7.7.6
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,br01611,ko00000,ko00001,ko00002,ko01000,ko03011,ko03021,ko03400
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size144
Cds size126
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925362.1114502-UTR-S-dermatodea_contig87240:25..431622925362.1114502-UTR-S-dermatodea_contig87240:25..43Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig87240 26..43 +
1694079881.8057425-UTR-S-dermatodea_contig87240:25..431694079881.8057425-UTR-S-dermatodea_contig87240:25..43Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig87240 26..43 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925362.1248157-CDS-S-dermatodea_contig87240:43..1691622925362.1248157-CDS-S-dermatodea_contig87240:43..169Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig87240 44..169 +
1694079881.8174143-CDS-S-dermatodea_contig87240:43..1691694079881.8174143-CDS-S-dermatodea_contig87240:43..169Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig87240 44..169 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig87240.16869.1prot_S-dermatodea_contig87240.16869.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig87240 44..169 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig87240.16869.1

>prot_S-dermatodea_contig87240.16869.1 ID=prot_S-dermatodea_contig87240.16869.1|Name=mRNA_S-dermatodea_contig87240.16869.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=42bp
MKNGSIKGRRHRAGLPVRGQRTRTNGRTKRGGKKTVAGKKK*
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mRNA from alignment at S-dermatodea_contig87240:26..169+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig87240.16869.1 ID=mRNA_S-dermatodea_contig87240.16869.1|Name=mRNA_S-dermatodea_contig87240.16869.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=144bp|location=Sequence derived from alignment at S-dermatodea_contig87240:26..169+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTAAGTATAAACCGGTTAATGAAAAATGGTTCTATTAAAGGACGACGCCA
TCGTGCAGGATTACCTGTTCGAGGTCAAAGAACACGCACAAATGGTAGAA
CAAAACGTGGAGGGAAAAAAACCGTGGCAGGAAAGAAAAAATAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig87240:26..169+

>mRNA_S-dermatodea_contig87240.16869.1 ID=mRNA_S-dermatodea_contig87240.16869.1|Name=mRNA_S-dermatodea_contig87240.16869.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=252bp|location=Sequence derived from alignment at S-dermatodea_contig87240:26..169+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAAAAATGGTTCTATTAAAGGACGACGCCATCGTGCAGGATTACCTGT
TCGAGGTCAAAGAACACGCACAAATGGTAGAACAAAACGTGGAGGGAAAA
AAACCGTGGCAGGAAAGAAAAAATAAATGAAAAATGGTTCTATTAAAGGA
CGACGCCATCGTGCAGGATTACCTGTTCGAGGTCAAAGAACACGCACAAA
TGGTAGAACAAAACGTGGAGGGAAAAAAACCGTGGCAGGAAAGAAAAAAT
AA
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