mRNA_S-dermatodea_contig1276.1687.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1276.1687.1
Unique NamemRNA_S-dermatodea_contig1276.1687.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1276.1687.1 vs. uniprot
Match: D7G059_ECTSI (Similar to Tetratricopeptide repeat protein 37 (TPR repeat protein 37) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G059_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 1.200e-36
Identity = 82/133 (61.65%), Postives = 97/133 (72.93%), Query Frame = 1 
Query:   43 ISDAAVRFRKGDTGGAVKAAAALIERHPTNRRVLHTALSLGALAGNVPLVKSACRSLQVLPKRSSTSDPDGHRART-LAEEALWASHLAMRAAGAPDSRSRRELCKAVHTAPASIRSWTRLGAFTADSAASTD 438
            IS AAVR+ +GD  GA  AA   + + P +RRVLHT +SL ALAG+  LV+ A R+LQ LPKR+++SDP G  AR   AEE LWA HLAMRA G PDS SRR L KAVH +P+SI SW RLGA TADSAA+TD
Sbjct: 1247 ISGAAVRYLRGDASGAAAAAGTFMAQRPGDRRVLHTVVSLAALAGDSGLVQQASRALQTLPKRATSSDPGGSLARQHAAEEDLWAIHLAMRATGVPDSESRRALLKAVHLSPSSITSWARLGAATADSAAATD 1379
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1276.1687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G059_ECTSI1.200e-3661.65Similar to Tetratricopeptide repeat protein 37 (TP... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1276contigS-dermatodea_contig1276:17339..18986 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.1
Seed ortholog evalue5.8e-32
Seed eggNOG ortholog2880.D7G059
Preferred nameTTC37
KEGG koko:K12600
KEGG Pathwayko03018,map03018
KEGG ModuleM00392
GOsGO:0000184,GO:0000288,GO:0000291,GO:0000785,GO:0000956,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0016070,GO:0016071,GO:0016441,GO:0016458,GO:0019222,GO:0019439,GO:0031974,GO:0031981,GO:0032991,GO:0034427,GO:0034641,GO:0034655,GO:0035327,GO:0040029,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043928,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0055087,GO:0060255,GO:0065007,GO:0070013,GO:0070478,GO:0070481,GO:0071704,GO:0090304,GO:1901360,GO:1901361,GO:1901575
EggNOG free text desc.exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
EggNOG OGsKOG1127@1,KOG1127@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Hectar predicted targeting categoryother localisation
Exons2
Model size481
Cds size480
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924260.4020917-CDS-S-dermatodea_contig1276:17338..176021622924260.4020917-CDS-S-dermatodea_contig1276:17338..17602Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1276 17339..17602 -
1694079132.3513293-CDS-S-dermatodea_contig1276:17338..176021694079132.3513293-CDS-S-dermatodea_contig1276:17338..17602Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1276 17339..17602 -
1622924260.414429-CDS-S-dermatodea_contig1276:18770..189861622924260.414429-CDS-S-dermatodea_contig1276:18770..18986Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1276 18771..18986 -
1694079132.3717558-CDS-S-dermatodea_contig1276:18770..189861694079132.3717558-CDS-S-dermatodea_contig1276:18770..18986Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1276 18771..18986 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1276.1687.1prot_S-dermatodea_contig1276.1687.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1276 17339..18986 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1276.1687.1

>prot_S-dermatodea_contig1276.1687.1 ID=prot_S-dermatodea_contig1276.1687.1|Name=mRNA_S-dermatodea_contig1276.1687.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=160bp
MQAPAQGVQGVGRAISDAAVRFRKGDTGGAVKAAAALIERHPTNRRVLHT
ALSLGALAGNVPLVKSACRSLQVLPKRSSTSDPDGHRARTLAEEALWASH
LAMRAAGAPDSRSRRELCKAVHTAPASIRSWTRLGAFTADSAASTDRSPL
GDGNGTAPSC
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mRNA from alignment at S-dermatodea_contig1276:17339..18986-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1276.1687.1 ID=mRNA_S-dermatodea_contig1276.1687.1|Name=mRNA_S-dermatodea_contig1276.1687.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1648bp|location=Sequence derived from alignment at S-dermatodea_contig1276:17339..18986- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCAGGCTCCTGCTCAAGGTGTGCAAGGCGTTGGCCGAGCGATTTCCGA
CGCTGCTGTGCGATTCCGTAAGGGGGACACAGGCGGGGCGGTCAAAGCCG
CTGCCGCGCTCATAGAGCGACACCCAACCAACCGACGCGTTCTGCACACG
GCGTTATCTTTGGGAGCTCTAGCCGGAAACGTCCCGCTGGTGAAAAGCGC
ATGCCGCTCGTTGCAGGCGAGTGCTTTCTTCGGGCGCACAGCGGAGGAGC
CATGTTGTGTACCCGGCCGCGATTACAGGCGTCGAGGGTTGTGTCGCGTC
ACTTTGCCTTGCACCGAAATGGAGACCCGAGGGCCCCGGTTTTTACCGGG
TACTTCCCTTTTCAAGCACAGCTCCCCCTCACGATAGGTGCACGTATTAC
GATACATATTATGGCGAAGGTCCGAATGGTGACGTCTAGTACCGTCGTCG
CCAAATTCCTCACTTGCCACGAGTTCATTCGGTCATGCTTATAGCAAAGC
AAGGAACAAGCGTTAAGCCTTGGTCGACACAGTCCCTCATTTAGGCCCCT
AAGGTGCTGCTGACGCGAGTCGCTTCTCTCGGCGTAATGGCTATTAATAG
GCATGCTATTTAGGTTGCACTCCTCTGACGCAAAAACTCAGTCGGTTTCC
TCGGTCCAGCTTCCTCGGACATGCTGTCGCCTGTCCCTGGCGGGAAAAAT
GAAAAAAACCGCACCATCGAACTCCCGACCGCTGCTGGGGTTTGAGACCA
GTTAACGCGACAACAATAACACAACAGTAGCAGCAGCAACAGCAACAGGA
TTGACAACTCGCGCGCTTCGGTAAAGAACCAATCGAGTAATACAAAAACA
GGGGAGGATCAGAAACATCGCATTTTGCCTGTCGCGCAGGAGTAAGGAGG
CGTTTTTCCGTTTGCTGTTCTCGCGCGTGATTGGCCAACCCATCCATCTA
CGATTCCTTTTCCGAGGTTACCAGTGTTCAACCAATATGTTCCGGGTTGC
ACCACTGTTAATATTACGGGGGACTATACCATAATTAACAGGTCCAAATT
TGCCAGAGAGTCTCAACCTAGAAAAATCAAAAGAGGCTGGAATTATCGAG
ATTTTGAGGTTGATGTTCTTTTGTATGACCGTATCTCGTGTCCCTTTTTG
TCTTTTGTTTTTTCATGAGGTTTTTGTCGTTGTTTGGGATATTTATGGCC
GGAACAGTTTAGTTGGGTACTTATGGTCGTGAGATTTGGTCCTGATTACT
TGATTACTGTGTACCTCCGTAATAGTATTATAATAGTATTACAGTATAGT
GTTGCGTGCAGGCCGACAACCCCTACTCCCTCCCATCTTTGGATTGCTCA
ATAATCCTCTCCTGCTTGCGCTCGTAACCCACAGGTCCTTCCGAAGCGGT
CCTCCACGAGCGATCCCGACGGCCACCGGGCGCGGACCCTCGCAGAGGAA
GCGCTTTGGGCATCCCACCTGGCCATGCGGGCGGCAGGAGCGCCGGACTC
ACGAAGCAGACGAGAGCTATGCAAAGCTGTTCACACCGCACCCGCTTCCA
TTCGGTCGTGGACAAGGCTCGGAGCGTTCACGGCGGACTCCGCGGCAAGC
ACGGACCGCTCCCCCCTCGGCGACGGAAACGGAACAGCACCGAGTTGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig1276:17339..18986-

>mRNA_S-dermatodea_contig1276.1687.1 ID=mRNA_S-dermatodea_contig1276.1687.1|Name=mRNA_S-dermatodea_contig1276.1687.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=960bp|location=Sequence derived from alignment at S-dermatodea_contig1276:17339..18986- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCAGGCTCCTGCTCAAGGTGTGCAAGGCGTTGGCCGAGCGATTTCCGA
CGCTGCTGTGCGATTCCGTAAGGGGGACACAGGCGGGGCGGTCAAAGCCG
CTGCCGCGCTCATAGAGCGACACCCAACCAACCGACGCGTTCTGCACACG
GCGTTATCTTTGGGAGCTCTAGCCGGAAACGTCCCGCTGGTGAAAAGCGC
ATGCCGCTCGTTGCAGATGCAGGCTCCTGCTCAAGGTGTGCAAGGCGTTG
GCCGAGCGATTTCCGACGCTGCTGTGCGATTCCGTAAGGGGGACACAGGC
GGGGCGGTCAAAGCCGCTGCCGCGCTCATAGAGCGACACCCAACCAACCG
ACGCGTTCTGCACACGGCGTTATCTTTGGGAGCTCTAGCCGGAAACGTCC
CGCTGGTGAAAAGCGCATGCCGCTCGTTGCAGGTCCTTCCGAAGCGGTCC
TCCACGAGCGATCCCGACGGCCACCGGGCGCGGACCCTCGCAGAGGAAGC
GCTTTGGGCATCCCACCTGGCCATGCGGGCGGCAGGAGCGCCGGACTCAC
GAAGCAGACGAGAGCTATGCAAAGCTGTTCACACCGCACCCGCTTCCATT
CGGTCGTGGACAAGGCTCGGAGCGTTCACGGCGGACTCCGCGGCAAGCAC
GGACCGCTCCCCCCTCGGCGACGGAAACGGAACAGCACCGAGTTGCGTCC
TTCCGAAGCGGTCCTCCACGAGCGATCCCGACGGCCACCGGGCGCGGACC
CTCGCAGAGGAAGCGCTTTGGGCATCCCACCTGGCCATGCGGGCGGCAGG
AGCGCCGGACTCACGAAGCAGACGAGAGCTATGCAAAGCTGTTCACACCG
CACCCGCTTCCATTCGGTCGTGGACAAGGCTCGGAGCGTTCACGGCGGAC
TCCGCGGCAAGCACGGACCGCTCCCCCCTCGGCGACGGAAACGGAACAGC
ACCGAGTTGC
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