mRNA_S-dermatodea_contig87144.16861.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig87144.16861.1
Unique NamemRNA_S-dermatodea_contig87144.16861.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig87144.16861.1 vs. uniprot
Match: D7G1V1_ECTSI (HSPC140 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1V1_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 1.470e-18
Identity = 48/73 (65.75%), Postives = 53/73 (72.60%), Query Frame = 1
Query:    1 FHGKFGRRPLPGDVSEFSVIAEGALKENGLPADFLGGEEG------AAAVCAMATAEVSPVCAILGGILGQEV 201
            F  KFGRRPLP D  E + + E AL+ NGLP DFLG E G      AA++CA ATAEVSPVCAILGGILGQEV
Sbjct:  236 FQEKFGRRPLPADTPECAAVIESALENNGLPPDFLG-EAGPVAGGAAASLCATATAEVSPVCAILGGILGQEV 307          
BLAST of mRNA_S-dermatodea_contig87144.16861.1 vs. uniprot
Match: A0A836CJW8_9STRA (ThiF domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJW8_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.600e-12
Identity = 35/67 (52.24%), Postives = 44/67 (65.67%), Query Frame = 1
Query:    1 FHGKFGRRPLPGDVSEFSVIAEGALKENGLPADFLGGEEGAAAVCAMATAEVSPVCAILGGILGQEV 201
            F  K GRRP   D    + +A+  LK NGLP DF+  +E  A +CA A  E++PVCA+LGGILGQEV
Sbjct:  226 FEEKHGRRPGASDGDTMTSVAQQCLKRNGLPTDFIASDE-TAVLCAQAQVEINPVCAVLGGILGQEV 291          
BLAST of mRNA_S-dermatodea_contig87144.16861.1 vs. uniprot
Match: A0A7S2UZW6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZW6_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 2.750e-6
Identity = 27/56 (48.21%), Postives = 39/56 (69.64%), Query Frame = 1
Query:   34 GDVSEFSVIAEGALKENGLPADFLGGEEGAAAVCAMATAEVSPVCAILGGILGQEV 201
            GD++E   I+   L++N +P DFL  E+    +C++A  E+SPVCAI+GGI GQEV
Sbjct:  259 GDLNELVQISTRLLQDNEMPPDFLT-EDDLRILCSVANTEISPVCAIVGGIWGQEV 313          
BLAST of mRNA_S-dermatodea_contig87144.16861.1 vs. uniprot
Match: UPI0018D7C9ED (SUMO-activating enzyme subunit 1-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D7C9ED)

HSP 1 Score: 50.4 bits (119), Expect = 1.810e-5
Identity = 31/71 (43.66%), Postives = 43/71 (60.56%), Query Frame = 1
Query:    1 FHGKFGRRPLP----GDVSEFSVIAEGALKENGLPADFLGGEEGAAAVCAMATAEVSPVCAILGGILGQEV 201
            F  +FGR P P     D +E   + +  L E G+ ADF+   +  A+ CA   AE+SPVCA++GG+LGQEV
Sbjct:  249 FQQEFGRNPSPDKLENDKTELLRLRDEVLDEAGIKADFV--SDDFASHCA---AELSPVCAVVGGVLGQEV 314          
BLAST of mRNA_S-dermatodea_contig87144.16861.1 vs. uniprot
Match: UPI0014558456 (SUMO-activating enzyme subunit 1-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI0014558456)

HSP 1 Score: 50.1 bits (118), Expect = 2.480e-5
Identity = 29/71 (40.85%), Postives = 42/71 (59.15%), Query Frame = 1
Query:    1 FHGKFGRRPLPG----DVSEFSVIAEGALKENGLPADFLGGEEGAAAVCAMATAEVSPVCAILGGILGQEV 201
            F  +FGR P PG    D SE   + +  + E GL  D++   +  A+ CA   AE+SPVCAI+GG++ QE+
Sbjct:  245 FQEEFGRNPSPGNLENDKSELLKLRDEVVDELGLKTDYIVINDDFASHCA---AEISPVCAIVGGVVAQEI 312          
BLAST of mRNA_S-dermatodea_contig87144.16861.1 vs. uniprot
Match: A0A8B7XYL5_ACAPL (SUMO-activating enzyme subunit 1-like n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7XYL5_ACAPL)

HSP 1 Score: 49.7 bits (117), Expect = 3.400e-5
Identity = 31/71 (43.66%), Postives = 43/71 (60.56%), Query Frame = 1
Query:    1 FHGKFGRRPLP----GDVSEFSVIAEGALKENGLPADFLGGEEGAAAVCAMATAEVSPVCAILGGILGQEV 201
            F  +FGR P P     D +E   + +  L E G+ ADF+   +  A+ CA   AE+SPVCA++GG+LGQEV
Sbjct:  249 FQEEFGRNPSPDNLENDKTELLRLRDEVLDEVGVKADFV--SDDFASHCA---AELSPVCAVVGGVLGQEV 314          
BLAST of mRNA_S-dermatodea_contig87144.16861.1 vs. uniprot
Match: A0A7S2WPN4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WPN4_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 7.220e-5
Identity = 24/51 (47.06%), Postives = 34/51 (66.67%), Query Frame = 1
Query:   49 FSVIAEGALKENGLPADFLGGEEGAAAVCAMATAEVSPVCAILGGILGQEV 201
            FS I +  LK +GL   +LG E+    +  ++ A+VSPVCA+LGG+LG EV
Sbjct:  115 FSKITQQYLKHSGLDTQYLGDEKQLDYLYTISNAQVSPVCAVLGGVLGNEV 165          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig87144.16861.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G1V1_ECTSI1.470e-1865.75HSPC140 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1V1... [more]
A0A836CJW8_9STRA1.600e-1252.24ThiF domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S2UZW6_9STRA2.750e-648.21Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
UPI0018D7C9ED1.810e-543.66SUMO-activating enzyme subunit 1-like n=1 Tax=Pati... [more]
UPI00145584562.480e-540.85SUMO-activating enzyme subunit 1-like n=1 Tax=Aste... [more]
A0A8B7XYL5_ACAPL3.400e-543.66SUMO-activating enzyme subunit 1-like n=1 Tax=Acan... [more]
A0A7S2WPN4_9STRA7.220e-547.06Hypothetical protein (Fragment) n=2 Tax=Eucampia a... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig87144contigS-dermatodea_contig87144:277..492 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.0
Seed ortholog evalue3.8e-15
Seed eggNOG ortholog2880.D7G1V1
Preferred nameAOS1
KEGG koko:K03845,ko:K04532,ko:K10684
KEGG ReactionR06258
KEGG Pathwayko00510,ko00513,ko01100,ko04120,ko05010,map00510,map00513,map01100,map04120,map05010
KEGG ModuleM00055
GOsGO:0003674,GO:0003824,GO:0004839,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006464,GO:0006807,GO:0008022,GO:0008047,GO:0008150,GO:0008152,GO:0008641,GO:0009987,GO:0016567,GO:0016874,GO:0016877,GO:0016925,GO:0018193,GO:0018205,GO:0019538,GO:0019899,GO:0019948,GO:0030234,GO:0031510,GO:0031974,GO:0031981,GO:0032446,GO:0032991,GO:0036211,GO:0043008,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044388,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046982,GO:0046983,GO:0050790,GO:0065007,GO:0065009,GO:0070013,GO:0070647,GO:0071704,GO:0098772,GO:1901564,GO:1902494
EggNOG free text desc.SUMO activating enzyme activity
EggNOG OGsCOG0476@1,KOG2014@2759
EC2.4.1.258,6.2.1.45
COG Functional cat.H
CAZyGT58
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUbiquitin/SUMO-activating enzyme E1
Ec32 orthologEc-07_004020.1
Exons1
Model size216
Cds size216
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925361.7479515-CDS-S-dermatodea_contig87144:276..4921622925361.7479515-CDS-S-dermatodea_contig87144:276..492Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig87144 277..492 +
1694079881.626859-CDS-S-dermatodea_contig87144:276..4921694079881.626859-CDS-S-dermatodea_contig87144:276..492Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig87144 277..492 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig87144.16861.1prot_S-dermatodea_contig87144.16861.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig87144 277..492 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig87144.16861.1

>prot_S-dermatodea_contig87144.16861.1 ID=prot_S-dermatodea_contig87144.16861.1|Name=mRNA_S-dermatodea_contig87144.16861.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=72bp
FHGKFGRRPLPGDVSEFSVIAEGALKENGLPADFLGGEEGAAAVCAMATA
EVSPVCAILGGILGQEVRCVR*
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mRNA from alignment at S-dermatodea_contig87144:277..492+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig87144.16861.1 ID=mRNA_S-dermatodea_contig87144.16861.1|Name=mRNA_S-dermatodea_contig87144.16861.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=216bp|location=Sequence derived from alignment at S-dermatodea_contig87144:277..492+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTCCACGGAAAATTCGGAAGGCGACCCCTCCCTGGCGACGTCTCCGAGTT CTCCGTCATCGCGGAAGGGGCGCTGAAGGAGAACGGGTTGCCAGCGGATT TTTTGGGAGGGGAGGAGGGGGCGGCGGCTGTGTGCGCCATGGCGACGGCG GAGGTATCCCCGGTCTGCGCCATCCTGGGAGGCATTTTGGGGCAGGAGGT GCGTTGCGTGCGTTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig87144:277..492+

>mRNA_S-dermatodea_contig87144.16861.1 ID=mRNA_S-dermatodea_contig87144.16861.1|Name=mRNA_S-dermatodea_contig87144.16861.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at S-dermatodea_contig87144:277..492+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTCCACGGAAAATTCGGAAGGCGACCCCTCCCTGGCGACGTCTCCGAGTT
CTCCGTCATCGCGGAAGGGGCGCTGAAGGAGAACGGGTTGCCAGCGGATT
TTTTGGGAGGGGAGGAGGGGGCGGCGGCTGTGTGCGCCATGGCGACGGCG
GAGGTATCCCCGGTCTGCGCCATCCTGGGAGGCATTTTGGGGCAGGAGGT
GCGTTGCGTGCGTTGATTCCACGGAAAATTCGGAAGGCGACCCCTCCCTG
GCGACGTCTCCGAGTTCTCCGTCATCGCGGAAGGGGCGCTGAAGGAGAAC
GGGTTGCCAGCGGATTTTTTGGGAGGGGAGGAGGGGGCGGCGGCTGTGTG
CGCCATGGCGACGGCGGAGGTATCCCCGGTCTGCGCCATCCTGGGAGGCA
TTTTGGGGCAGGAGGTGCGTTGCGTGCGTTGA
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