mRNA_S-dermatodea_contig1276.1686.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1276.1686.1
Unique NamemRNA_S-dermatodea_contig1276.1686.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1276.1686.1 vs. uniprot
Match: A0A6H5JG00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG00_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 5.220e-22
Identity = 82/222 (36.94%), Postives = 112/222 (50.45%), Query Frame = 1 
Query:   22 EFEAVELGNCLTGVGNAALCGGR---------VGSAAAAVKATVRAVHLYPGEAAAWRCLGAALVARALSSSSENAEGRAALV-DANIIYRGVAEASSAS--RQPHSREEGMAALEANYSALLLGATQGTASSKAAKTPEAPEALAESAAISSSPDRLFATALHAARTALSSEAPPDAIAQYKRTTTLRPRALAGWRELAASFELSGQHHASGAALECGVRA 651
            E  A +LG  L+G+    LC GR          G+ + AV+AT RAVHLYPGE ++WR L  A+V  ALS   ++   R  ++ DA+ ++RG+ +  S S   +    ++ +   EA+Y  LLLG  +    S   KT   P AL              A  L A           DAI +YK      PRAL GWRELA  ++LS QH+A+ AALECG +A
Sbjct:  994 ELAAKDLGTALSGIAKTVLCSGRCSGGGGKGKAGNRSRAVRATSRAVHLYPGEPSSWRYLARAMVGEALSWVYKSPGTRDVMLRDAHSLFRGIPKPKSDSGPTRGDGSQDSLLRAEADYLQLLLGQKKTHDGSSTGKTKSFPAAL-------------MAARLAAHGGVDGHGGHEDAIKRYKLALREEPRALVGWRELAVCYQLSNQHNAATAALECGAQA 1202
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BLAST of mRNA_S-dermatodea_contig1276.1686.1 vs. uniprot
Match: D7G059_ECTSI (Similar to Tetratricopeptide repeat protein 37 (TPR repeat protein 37) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G059_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 1.760e-15
Identity = 74/219 (33.79%), Postives = 97/219 (44.29%), Query Frame = 1 
Query:   22 EFEAVELGNCLTGVGNAALCGG---------RVGSAAAAVKATVRAVHLYPGEAAAWRCLGAALVARALSSSSENAEGRAALVDANIIYRGVAEASSASRQPHSREEGMAALEANYSALLLGATQGTASSKAAKTPEAPEALAESAAISSSPDRLFATALHAARTALSSEAPPDAIAQYKRTTTLRPRALAGWRELAASFELSGQHHASGAALECGVRA 651
            E  A +L   L+G+    LC G         + G+ + AV+AT RAVHLYPGE ++WR L     ARA+S S                 RG              ++ +   EA+Y  LLLG                     + ++  S P  L A  + A           DAI +YK     +PRAL GWRELAA +ELS QHHA+ AALECG +A
Sbjct: 1422 ELAARDLATALSGIAKTVLCSGTCSGGDGKGKAGTRSRAVRATSRAVHLYPGEPSSWRYL-----ARAMSDSGPT--------------RG-----------DGSQDSLLRAEADYLQLLLGQNN----------------THDGSSTDSFPAALMAARVAARGGVDGDGGREDAIKRYKLALREQPRALVGWRELAACYELSNQHHAAAAALECGAQA 1594
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1276.1686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JG00_9PHAE5.220e-2236.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G059_ECTSI1.760e-1533.79Similar to Tetratricopeptide repeat protein 37 (TP... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1276contigS-dermatodea_contig1276:15781..17224 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.7
Seed ortholog evalue5.7e-14
Seed eggNOG ortholog2880.D7G059
Preferred nameTTC37
KEGG koko:K12600
KEGG Pathwayko03018,map03018
KEGG ModuleM00392
GOsGO:0000184,GO:0000288,GO:0000291,GO:0000785,GO:0000956,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0016070,GO:0016071,GO:0016441,GO:0016458,GO:0019222,GO:0019439,GO:0031974,GO:0031981,GO:0032991,GO:0034427,GO:0034641,GO:0034655,GO:0035327,GO:0040029,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043928,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0055087,GO:0060255,GO:0065007,GO:0070013,GO:0070478,GO:0070481,GO:0071704,GO:0090304,GO:1901360,GO:1901361,GO:1901575
EggNOG free text desc.exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
EggNOG OGsKOG1127@1,KOG1127@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Hectar predicted targeting categoryother localisation
Exons2
Model size654
Cds size651
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924260.3638878-CDS-S-dermatodea_contig1276:15782..162471622924260.3638878-CDS-S-dermatodea_contig1276:15782..16247Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1276 15783..16247 -
1694079132.3239405-CDS-S-dermatodea_contig1276:15782..162471694079132.3239405-CDS-S-dermatodea_contig1276:15782..16247Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1276 15783..16247 -
1622924260.3753252-CDS-S-dermatodea_contig1276:17038..172241622924260.3753252-CDS-S-dermatodea_contig1276:17038..17224Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1276 17039..17224 -
1694079132.339325-CDS-S-dermatodea_contig1276:17038..172241694079132.339325-CDS-S-dermatodea_contig1276:17038..17224Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1276 17039..17224 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1276.1686.1prot_S-dermatodea_contig1276.1686.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1276 15783..17224 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1276.1686.1

>prot_S-dermatodea_contig1276.1686.1 ID=prot_S-dermatodea_contig1276.1686.1|Name=mRNA_S-dermatodea_contig1276.1686.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=217bp
HATAVAAEFEAVELGNCLTGVGNAALCGGRVGSAAAAVKATVRAVHLYPG
EAAAWRCLGAALVARALSSSSENAEGRAALVDANIIYRGVAEASSASRQP
HSREEGMAALEANYSALLLGATQGTASSKAAKTPEAPEALAESAAISSSP
DRLFATALHAARTALSSEAPPDAIAQYKRTTTLRPRALAGWRELAASFEL
SGQHHASGAALECGVRA
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mRNA from alignment at S-dermatodea_contig1276:15781..17224-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1276.1686.1 ID=mRNA_S-dermatodea_contig1276.1686.1|Name=mRNA_S-dermatodea_contig1276.1686.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1444bp|location=Sequence derived from alignment at S-dermatodea_contig1276:15781..17224- (Saccorhiza dermatodea SderLu1190fm monoicous)
CACGCCACTGCTGTCGCCGCTGAGTTTGAGGCGGTGGAGCTCGGTAATTG
TCTCACCGGTGTCGGAAACGCGGCGCTGTGCGGCGGGAGAGTGGGGTCGG
CTGCTGCTGCTGTTAAGGCCACGGTTCGGGCGGTGCACTTGTACCCGGGA
GAGGCGGCTGCGTGGCGTTGCCTCGGAGCGGCGCTGGTGAGTGGGAGTAT
GCATGCATGGGTGCTGCTGAGGCTGTGCTGAAGAAGCTTGTCCGATTTGG
GTTTAATTTGTTGATCGATTTTGTTTTGTGAAGCTAAGTTTCACGCCACA
TATTGCAGCCGTCCGGGGGACGTTAATCCCGGCTTAACCCTTTTGGGACT
AACGCTTTTTTCGGGCAACTATTTGCTACTATGGTAGCCAACAGTTACTC
GAAAACAGGCTTCGTCCCCAGGCTTAGTCCCAAAAGGGTAAATAATAATA
GCAAACAGTTACCCGAAAACAGCTCTAGTCCCAAAAGGGTTAACGGTCGG
ATACGCGACTTCGAAGGGGAAGTACAACTAAGACACAAAGCTACATGCTG
TTACGAAAGAGCTCTACACATAGTGTATCAATCGTCAGAACAGATGTCCC
GTCCCGAAATATCTTGGGAGTCAAAATTGACCCATATTTGCGTTTCTTTT
GGCTTCCGGGCTTTCCTTCTGCTTGCCTTCCACCCCCAGGGCAAGTACAT
ATTATGGACCAAACCGGGGATGTTGGCGTGTCAGCAACATTCAAGACCTT
GTAGGTGCCATCGAAAAATACACGGGTTTGGGCGGTTGGTGGCGTGCCAG
CAATAATACATACTTTCACCATTGTGACTAAACAACATACAAGGTGTGCT
TCACCATGGCATCCCCATGATATATACTCTTCACGTCCGACGTACTGCAT
TATATTTCAACCGTTCGTGCGACGTGGCTTTTGACTCTTTGATTTTTGCC
CCCTTTTTTTTCCCGACACTGCCTTAGGTCGCGCGAGCCCTGTCTTCCTC
GTCTGAAAACGCCGAAGGTAGAGCTGCTCTCGTCGACGCCAACATCATCT
ACCGGGGCGTTGCGGAAGCGAGCTCCGCGTCCAGACAACCTCACAGTCGG
GAAGAAGGCATGGCAGCGTTGGAGGCTAACTACTCCGCATTGCTGCTGGG
TGCTACCCAAGGCACCGCCAGCTCGAAAGCAGCCAAAACTCCGGAAGCAC
CTGAAGCTTTGGCCGAATCTGCTGCTATCTCCTCCTCACCTGACCGTTTA
TTTGCCACCGCACTACATGCGGCCAGGACTGCGCTCAGCAGCGAAGCCCC
CCCGGATGCGATCGCGCAGTACAAGAGAACGACAACGCTGCGACCGAGAG
CGCTGGCCGGGTGGCGCGAGCTAGCGGCTTCTTTCGAGCTCTCGGGTCAG
CACCACGCCTCGGGGGCTGCGCTGGAATGCGGGGTGCGTGCGGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig1276:15781..17224-

>mRNA_S-dermatodea_contig1276.1686.1 ID=mRNA_S-dermatodea_contig1276.1686.1|Name=mRNA_S-dermatodea_contig1276.1686.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1302bp|location=Sequence derived from alignment at S-dermatodea_contig1276:15781..17224- (Saccorhiza dermatodea SderLu1190fm monoicous)
CACGCCACTGCTGTCGCCGCTGAGTTTGAGGCGGTGGAGCTCGGTAATTG
TCTCACCGGTGTCGGAAACGCGGCGCTGTGCGGCGGGAGAGTGGGGTCGG
CTGCTGCTGCTGTTAAGGCCACGGTTCGGGCGGTGCACTTGTACCCGGGA
GAGGCGGCTGCGTGGCGTTGCCTCGGAGCGGCGCTGCACGCCACTGCTGT
CGCCGCTGAGTTTGAGGCGGTGGAGCTCGGTAATTGTCTCACCGGTGTCG
GAAACGCGGCGCTGTGCGGCGGGAGAGTGGGGTCGGCTGCTGCTGCTGTT
AAGGCCACGGTTCGGGCGGTGCACTTGTACCCGGGAGAGGCGGCTGCGTG
GCGTTGCCTCGGAGCGGCGCTGGTCGCGCGAGCCCTGTCTTCCTCGTCTG
AAAACGCCGAAGGTAGAGCTGCTCTCGTCGACGCCAACATCATCTACCGG
GGCGTTGCGGAAGCGAGCTCCGCGTCCAGACAACCTCACAGTCGGGAAGA
AGGCATGGCAGCGTTGGAGGCTAACTACTCCGCATTGCTGCTGGGTGCTA
CCCAAGGCACCGCCAGCTCGAAAGCAGCCAAAACTCCGGAAGCACCTGAA
GCTTTGGCCGAATCTGCTGCTATCTCCTCCTCACCTGACCGTTTATTTGC
CACCGCACTACATGCGGCCAGGACTGCGCTCAGCAGCGAAGCCCCCCCGG
ATGCGATCGCGCAGTACAAGAGAACGACAACGCTGCGACCGAGAGCGCTG
GCCGGGTGGCGCGAGCTAGCGGCTTCTTTCGAGCTCTCGGGTCAGCACCA
CGCCTCGGGGGCTGCGCTGGAATGCGGGGTGCGTGCGGTCGCGCGAGCCC
TGTCTTCCTCGTCTGAAAACGCCGAAGGTAGAGCTGCTCTCGTCGACGCC
AACATCATCTACCGGGGCGTTGCGGAAGCGAGCTCCGCGTCCAGACAACC
TCACAGTCGGGAAGAAGGCATGGCAGCGTTGGAGGCTAACTACTCCGCAT
TGCTGCTGGGTGCTACCCAAGGCACCGCCAGCTCGAAAGCAGCCAAAACT
CCGGAAGCACCTGAAGCTTTGGCCGAATCTGCTGCTATCTCCTCCTCACC
TGACCGTTTATTTGCCACCGCACTACATGCGGCCAGGACTGCGCTCAGCA
GCGAAGCCCCCCCGGATGCGATCGCGCAGTACAAGAGAACGACAACGCTG
CGACCGAGAGCGCTGGCCGGGTGGCGCGAGCTAGCGGCTTCTTTCGAGCT
CTCGGGTCAGCACCACGCCTCGGGGGCTGCGCTGGAATGCGGGGTGCGTG
CG
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