mRNA_S-dermatodea_contig8714.16858.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8714.16858.1
Unique NamemRNA_S-dermatodea_contig8714.16858.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8714.16858.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8714contigS-dermatodea_contig8714:3319..4120 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size802
Cds size588
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8714.16858.1prot_S-dermatodea_contig8714.16858.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8714 3405..3992 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925361.614513-UTR-S-dermatodea_contig8714:3318..34041622925361.614513-UTR-S-dermatodea_contig8714:3318..3404Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8714 3319..3404 +
1694079881.5624156-UTR-S-dermatodea_contig8714:3318..34041694079881.5624156-UTR-S-dermatodea_contig8714:3318..3404Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8714 3319..3404 +
1622925361.6427066-UTR-S-dermatodea_contig8714:3992..41201622925361.6427066-UTR-S-dermatodea_contig8714:3992..4120Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8714 3993..4120 +
1694079881.5957344-UTR-S-dermatodea_contig8714:3992..41201694079881.5957344-UTR-S-dermatodea_contig8714:3992..4120Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8714 3993..4120 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925361.631471-CDS-S-dermatodea_contig8714:3404..39921622925361.631471-CDS-S-dermatodea_contig8714:3404..3992Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8714 3405..3992 +
1694079881.5749922-CDS-S-dermatodea_contig8714:3404..39921694079881.5749922-CDS-S-dermatodea_contig8714:3404..3992Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8714 3405..3992 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8714.16858.1

>prot_S-dermatodea_contig8714.16858.1 ID=prot_S-dermatodea_contig8714.16858.1|Name=mRNA_S-dermatodea_contig8714.16858.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=196bp
MLSPRLSLISIPTARPLFSQNYFPPYPLAPRVHHRHTVPTVLINGFPTMA
REISPSSTSSSSTTFGRIDDVEATSPPDEVDPPPRPQIAPGSSQPPPPLS
LDLFLPEPSSSFIPSVSATGTEQSDRFPFPPPPEPSSKLLVPFVARTGGS
CRAATFETSPFVEIPPPRCTLRRFSALLRSSSPPEPEPEPEPDDA*
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mRNA from alignment at S-dermatodea_contig8714:3319..4120+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8714.16858.1 ID=mRNA_S-dermatodea_contig8714.16858.1|Name=mRNA_S-dermatodea_contig8714.16858.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=802bp|location=Sequence derived from alignment at S-dermatodea_contig8714:3319..4120+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TATAGTCTTGTTAGAATCCTTAACCAATCATCCTCGTTCCTCTTACGTGC
GAGGGCGATAAAAAAATTCGTTTCGCCAAAAAAAGCATGCTCTCCCCTCG
TCTCTCTCTTATCTCTATCCCAACAGCCCGGCCGCTCTTTTCACAAAACT
ACTTTCCTCCCTATCCCCTCGCACCGCGCGTGCATCATCGTCACACCGTG
CCAACGGTCCTCATCAACGGCTTCCCAACGATGGCCAGAGAGATCTCCCC
ATCCTCGACCTCATCATCTTCAACTACGTTCGGCAGGATAGACGACGTCG
AAGCCACATCACCGCCCGACGAAGTCGATCCACCACCACGGCCACAGATA
GCGCCCGGCTCGTCCCAGCCGCCGCCGCCGCTCAGTCTCGACCTCTTCTT
GCCAGAACCTTCGTCCTCCTTCATCCCGTCGGTATCGGCCACGGGCACAG
AGCAGAGCGACCGCTTCCCTTTCCCGCCGCCCCCGGAGCCCTCGTCAAAG
CTGCTCGTCCCGTTCGTCGCGCGCACGGGGGGGAGCTGCCGCGCGGCCAC
ATTCGAAACAAGCCCGTTCGTCGAAATCCCCCCGCCGCGATGCACCCTGA
GGCGTTTTTCGGCGCTGCTCAGGTCGTCGTCGCCACCAGAGCCAGAGCCA
GAACCCGAACCCGACGACGCCTGATGCGCGCTCGCCGCGGCCAGGCTCTC
CCGAGACCTCTTGCCGTTCTGCGACCCGTCGTCGCTTCCGCCAGACTCCG
TACCACTGCCGCCCGCGGCGAAAGTTCTCGGGTGCGGCGTGGTCGGCGGG
CG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8714:3319..4120+

>mRNA_S-dermatodea_contig8714.16858.1 ID=mRNA_S-dermatodea_contig8714.16858.1|Name=mRNA_S-dermatodea_contig8714.16858.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1176bp|location=Sequence derived from alignment at S-dermatodea_contig8714:3319..4120+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTCTCCCCTCGTCTCTCTCTTATCTCTATCCCAACAGCCCGGCCGCT
CTTTTCACAAAACTACTTTCCTCCCTATCCCCTCGCACCGCGCGTGCATC
ATCGTCACACCGTGCCAACGGTCCTCATCAACGGCTTCCCAACGATGGCC
AGAGAGATCTCCCCATCCTCGACCTCATCATCTTCAACTACGTTCGGCAG
GATAGACGACGTCGAAGCCACATCACCGCCCGACGAAGTCGATCCACCAC
CACGGCCACAGATAGCGCCCGGCTCGTCCCAGCCGCCGCCGCCGCTCAGT
CTCGACCTCTTCTTGCCAGAACCTTCGTCCTCCTTCATCCCGTCGGTATC
GGCCACGGGCACAGAGCAGAGCGACCGCTTCCCTTTCCCGCCGCCCCCGG
AGCCCTCGTCAAAGCTGCTCGTCCCGTTCGTCGCGCGCACGGGGGGGAGC
TGCCGCGCGGCCACATTCGAAACAAGCCCGTTCGTCGAAATCCCCCCGCC
GCGATGCACCCTGAGGCGTTTTTCGGCGCTGCTCAGGTCGTCGTCGCCAC
CAGAGCCAGAGCCAGAACCCGAACCCGACGACGCCTGAATGCTCTCCCCT
CGTCTCTCTCTTATCTCTATCCCAACAGCCCGGCCGCTCTTTTCACAAAA
CTACTTTCCTCCCTATCCCCTCGCACCGCGCGTGCATCATCGTCACACCG
TGCCAACGGTCCTCATCAACGGCTTCCCAACGATGGCCAGAGAGATCTCC
CCATCCTCGACCTCATCATCTTCAACTACGTTCGGCAGGATAGACGACGT
CGAAGCCACATCACCGCCCGACGAAGTCGATCCACCACCACGGCCACAGA
TAGCGCCCGGCTCGTCCCAGCCGCCGCCGCCGCTCAGTCTCGACCTCTTC
TTGCCAGAACCTTCGTCCTCCTTCATCCCGTCGGTATCGGCCACGGGCAC
AGAGCAGAGCGACCGCTTCCCTTTCCCGCCGCCCCCGGAGCCCTCGTCAA
AGCTGCTCGTCCCGTTCGTCGCGCGCACGGGGGGGAGCTGCCGCGCGGCC
ACATTCGAAACAAGCCCGTTCGTCGAAATCCCCCCGCCGCGATGCACCCT
GAGGCGTTTTTCGGCGCTGCTCAGGTCGTCGTCGCCACCAGAGCCAGAGC
CAGAACCCGAACCCGACGACGCCTGA
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