mRNA_S-dermatodea_contig87138.16856.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig87138.16856.1
Unique NamemRNA_S-dermatodea_contig87138.16856.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig87138.16856.1 vs. uniprot
Match: A0A6H5KZX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZX0_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.380e-18
Identity = 37/44 (84.09%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:    1 FDPKTAQRFLLSPGDHFFVPVNNIYRLENHSEEAKAVIYWAILK 132
            FD KTAQRFLLSPGDHF+VPVNN+YRLENHS+ AKAVIYW I+K
Sbjct:  865 FDAKTAQRFLLSPGDHFYVPVNNVYRLENHSDRAKAVIYWTIIK 908
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BLAST of mRNA_S-dermatodea_contig87138.16856.1 vs. uniprot
Match: D8LJZ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJZ6_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 1.380e-18
Identity = 37/44 (84.09%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:    1 FDPKTAQRFLLSPGDHFFVPVNNIYRLENHSEEAKAVIYWAILK 132
            FD KTAQRFLLSPGDHF+VPVNN+YRLENHS+ AKAVIYW I+K
Sbjct:  767 FDAKTAQRFLLSPGDHFYVPVNNVYRLENHSDRAKAVIYWTIIK 810
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BLAST of mRNA_S-dermatodea_contig87138.16856.1 vs. uniprot
Match: A0A835YQ32_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ32_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.920e-13
Identity = 30/43 (69.77%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    1 FDPKTAQRFLLSPGDHFFVPVNNIYRLENHSEEAKAVIYWAIL 129
            FD  TAQR+LLSPGDHF+VP  N+YRLENH+ +A A I WAIL
Sbjct:  119 FDDATAQRYLLSPGDHFYVPPRNVYRLENHAPDADAQICWAIL 161
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BLAST of mRNA_S-dermatodea_contig87138.16856.1 vs. uniprot
Match: A0A7S2B2G0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B2G0_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 6.330e-13
Identity = 27/44 (61.36%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    1 FDPKTAQRFLLSPGDHFFVPVNNIYRLENHSEEAKAVIYWAILK 132
            F+P TAQRF+LS GDHFF+P  N+YRLENHS+     +YW I+K
Sbjct:  137 FEPATAQRFILSAGDHFFIPPGNVYRLENHSKHKTCKLYWTIIK 180
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BLAST of mRNA_S-dermatodea_contig87138.16856.1 vs. uniprot
Match: A0A7S0GGP7_9STRA (Hypothetical protein n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GGP7_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.620e-11
Identity = 26/44 (59.09%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:    1 FDPKTAQRFLLSPGDHFFVPVNNIYRLENHSEEAKAVIYWAILK 132
            +DP TAQRFLLSPGD F VP NN YRL+NHS      ++W I++
Sbjct:   46 YDPTTAQRFLLSPGDFFQVPPNNSYRLQNHSTTTDCEVFWTIIR 89
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BLAST of mRNA_S-dermatodea_contig87138.16856.1 vs. uniprot
Match: A0A7S2SRM5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SRM5_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 9.990e-11
Identity = 28/44 (63.64%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    1 FDPKTAQRFLLSPGDHFFVPVNNIYRLENHSEEAKAVIYWAILK 132
            FD  TAQRFLLS GD F++P  NIYRLENHSE+    I+WAI++
Sbjct:  405 FDRATAQRFLLSSGDQFYIPPFNIYRLENHSEDQDCKIFWAIIQ 448
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BLAST of mRNA_S-dermatodea_contig87138.16856.1 vs. uniprot
Match: K0RFD6_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RFD6_THAOC)

HSP 1 Score: 63.5 bits (153), Expect = 1.360e-10
Identity = 25/44 (56.82%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    1 FDPKTAQRFLLSPGDHFFVPVNNIYRLENHSEEAKAVIYWAILK 132
            FDP+TAQR+LLS GD F +P  N+YR+ENHS   +A ++W I+K
Sbjct:  341 FDPRTAQRYLLSKGDMFQIPPGNVYRIENHSRSDRATLFWTIVK 384
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BLAST of mRNA_S-dermatodea_contig87138.16856.1 vs. uniprot
Match: K0TMS8_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TMS8_THAOC)

HSP 1 Score: 63.5 bits (153), Expect = 1.370e-10
Identity = 25/44 (56.82%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    1 FDPKTAQRFLLSPGDHFFVPVNNIYRLENHSEEAKAVIYWAILK 132
            FDP+TAQR+LLS GD F +P  N+YR+ENHS+  +A ++W I+K
Sbjct:  551 FDPRTAQRYLLSKGDMFQIPPGNVYRIENHSKTDRATLFWTIVK 594
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BLAST of mRNA_S-dermatodea_contig87138.16856.1 vs. uniprot
Match: A0A7S2FXX0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FXX0_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.630e-10
Identity = 24/44 (54.55%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    1 FDPKTAQRFLLSPGDHFFVPVNNIYRLENHSEEAKAVIYWAILK 132
            F+P++AQR+LLSPGD FFV   N+YRL+NHS++    ++W I+K
Sbjct:  202 FEPESAQRYLLSPGDQFFVAPGNVYRLQNHSKKVDCKLFWTIIK 245
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BLAST of mRNA_S-dermatodea_contig87138.16856.1 vs. uniprot
Match: A0A418B930_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418B930_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 3.580e-8
Identity = 25/44 (56.82%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:    1 FDPKTAQRFLLSPGDHFFVPVNNIYRLENHSEEAKAVIYWAILK 132
            FD +TAQRFLLSPGD +FVP  N Y L NHS+  +A + + I+K
Sbjct:  256 FDHETAQRFLLSPGDEYFVPPQNAYYLRNHSKTVEAEVRFVIMK 299
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig87138.16856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6H5KZX0_9PHAE1.380e-1884.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJZ6_ECTSI1.380e-1884.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YQ32_9STRA1.920e-1369.77Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2B2G0_9STRA6.330e-1361.36Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S0GGP7_9STRA1.620e-1159.09Hypothetical protein n=2 Tax=Proboscia inermis Tax... [more]
A0A7S2SRM5_9STRA9.990e-1163.64Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
K0RFD6_THAOC1.360e-1056.82Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
K0TMS8_THAOC1.370e-1056.82Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A7S2FXX0_9STRA1.630e-1054.55Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A418B930_9STRA3.580e-856.82Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig87138contigS-dermatodea_contig87138:195..326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.0
Seed ortholog evalue2.3e-15
Seed eggNOG ortholog2880.D8LJZ6
KEGG koko:K11497
EggNOG OGs29KWX@1,2RU66@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size132
Cds size132
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925361.5273116-CDS-S-dermatodea_contig87138:194..3261622925361.5273116-CDS-S-dermatodea_contig87138:194..326Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig87138 195..326 +
1694079881.5138257-CDS-S-dermatodea_contig87138:194..3261694079881.5138257-CDS-S-dermatodea_contig87138:194..326Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig87138 195..326 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig87138.16856.1prot_S-dermatodea_contig87138.16856.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig87138 195..326 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig87138.16856.1

>prot_S-dermatodea_contig87138.16856.1 ID=prot_S-dermatodea_contig87138.16856.1|Name=mRNA_S-dermatodea_contig87138.16856.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=44bp
FDPKTAQRFLLSPGDHFFVPVNNIYRLENHSEEAKAVIYWAILK
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mRNA from alignment at S-dermatodea_contig87138:195..326+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig87138.16856.1 ID=mRNA_S-dermatodea_contig87138.16856.1|Name=mRNA_S-dermatodea_contig87138.16856.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=132bp|location=Sequence derived from alignment at S-dermatodea_contig87138:195..326+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTCGACCCGAAGACTGCCCAGCGATTCCTCCTGTCGCCGGGGGACCACTT
TTTTGTGCCCGTGAACAATATCTACCGCCTCGAGAATCACTCCGAGGAGG
CTAAGGCAGTCATCTACTGGGCCATCCTCAAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig87138:195..326+

>mRNA_S-dermatodea_contig87138.16856.1 ID=mRNA_S-dermatodea_contig87138.16856.1|Name=mRNA_S-dermatodea_contig87138.16856.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=264bp|location=Sequence derived from alignment at S-dermatodea_contig87138:195..326+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTCGACCCGAAGACTGCCCAGCGATTCCTCCTGTCGCCGGGGGACCACTT
TTTTGTGCCCGTGAACAATATCTACCGCCTCGAGAATCACTCCGAGGAGG
CTAAGGCAGTCATCTACTGGGCCATCCTCAAGTTCGACCCGAAGACTGCC
CAGCGATTCCTCCTGTCGCCGGGGGACCACTTTTTTGTGCCCGTGAACAA
TATCTACCGCCTCGAGAATCACTCCGAGGAGGCTAAGGCAGTCATCTACT
GGGCCATCCTCAAG
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