mRNA_S-dermatodea_contig87111.16852.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig87111.16852.1
Unique NamemRNA_S-dermatodea_contig87111.16852.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig87111.16852.1 vs. uniprot
Match: D7G4L4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4L4_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 2.770e-13
Identity = 37/45 (82.22%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    1 IESVELALKGNGVYLGITDKDKLLGQLEVLQTKEAQLQRKELFIM 135
            IESVE+AL G GVYLGITDKD LL QL+VLQ KEAQLQ KELFIM
Sbjct:   25 IESVEMALSGQGVYLGITDKDTLLSQLDVLQKKEAQLQTKELFIM 69
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BLAST of mRNA_S-dermatodea_contig87111.16852.1 vs. uniprot
Match: A0A6H5KKE2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKE2_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 2.660e-10
Identity = 32/40 (80.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:   16 LALKGNGVYLGITDKDKLLGQLEVLQTKEAQLQRKELFIM 135
            +AL G GVYLGITDKD LL QL+VLQ KEAQLQ KELFIM
Sbjct:    1 MALSGQGVYLGITDKDTLLSQLDVLQKKEAQLQTKELFIM 40
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig87111.16852.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4L4_ECTSI2.770e-1382.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KKE2_9PHAE2.660e-1080.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig87111contigS-dermatodea_contig87111:325..459 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size135
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925361.327615-CDS-S-dermatodea_contig87111:324..4591622925361.327615-CDS-S-dermatodea_contig87111:324..459Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig87111 325..459 -
1694079881.3922384-CDS-S-dermatodea_contig87111:324..4591694079881.3922384-CDS-S-dermatodea_contig87111:324..459Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig87111 325..459 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig87111.16852.1prot_S-dermatodea_contig87111.16852.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig87111 325..459 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig87111.16852.1

>prot_S-dermatodea_contig87111.16852.1 ID=prot_S-dermatodea_contig87111.16852.1|Name=mRNA_S-dermatodea_contig87111.16852.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=45bp
IESVELALKGNGVYLGITDKDKLLGQLEVLQTKEAQLQRKELFIM
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mRNA from alignment at S-dermatodea_contig87111:325..459-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig87111.16852.1 ID=mRNA_S-dermatodea_contig87111.16852.1|Name=mRNA_S-dermatodea_contig87111.16852.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=135bp|location=Sequence derived from alignment at S-dermatodea_contig87111:325..459- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATCGAGAGCGTGGAGCTGGCCTTGAAGGGGAATGGCGTCTACCTCGGGAT
CACGGACAAGGATAAGCTGCTGGGCCAGCTGGAGGTGCTTCAGACGAAAG
AAGCACAGCTGCAAAGGAAGGAGCTCTTCATCATG
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Coding sequence (CDS) from alignment at S-dermatodea_contig87111:325..459-

>mRNA_S-dermatodea_contig87111.16852.1 ID=mRNA_S-dermatodea_contig87111.16852.1|Name=mRNA_S-dermatodea_contig87111.16852.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=270bp|location=Sequence derived from alignment at S-dermatodea_contig87111:325..459- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATCGAGAGCGTGGAGCTGGCCTTGAAGGGGAATGGCGTCTACCTCGGGAT
CACGGACAAGGATAAGCTGCTGGGCCAGCTGGAGGTGCTTCAGACGAAAG
AAGCACAGCTGCAAAGGAAGGAGCTCTTCATCATGATCGAGAGCGTGGAG
CTGGCCTTGAAGGGGAATGGCGTCTACCTCGGGATCACGGACAAGGATAA
GCTGCTGGGCCAGCTGGAGGTGCTTCAGACGAAAGAAGCACAGCTGCAAA
GGAAGGAGCTCTTCATCATG
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