mRNA_S-dermatodea_contig871.16848.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig871.16848.1
Unique NamemRNA_S-dermatodea_contig871.16848.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig871.16848.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig871contigS-dermatodea_contig871:6738..7554 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size819
Cds size462
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925360.9773526-UTR-S-dermatodea_contig871:6737..70921622925360.9773526-UTR-S-dermatodea_contig871:6737..7092Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig871 6738..7092 +
1694079881.1514847-UTR-S-dermatodea_contig871:6737..70921694079881.1514847-UTR-S-dermatodea_contig871:6737..7092Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig871 6738..7092 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925361.001292-CDS-S-dermatodea_contig871:7092..75541622925361.001292-CDS-S-dermatodea_contig871:7092..7554Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig871 7093..7554 +
1694079881.1601493-CDS-S-dermatodea_contig871:7092..75541694079881.1601493-CDS-S-dermatodea_contig871:7092..7554Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig871 7093..7554 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig871.16848.1prot_S-dermatodea_contig871.16848.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig871 7093..7554 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig871.16848.1

>prot_S-dermatodea_contig871.16848.1 ID=prot_S-dermatodea_contig871.16848.1|Name=mRNA_S-dermatodea_contig871.16848.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=154bp
MVALNSADTQHNTYERHRPRHARAQKSLDTKRPTTGADDEPNTIARLNMV
ALNSADTQHNTAYERHRPRHGQRSTRSREIPILPSNQPSFSATTIASMSL
HAPLTILRNAFLLSRSQPPRVGPKCLLKNTRVFASSSDVGPTLLIPARRA
NSQH
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mRNA from alignment at S-dermatodea_contig871:6738..7554+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig871.16848.1 ID=mRNA_S-dermatodea_contig871.16848.1|Name=mRNA_S-dermatodea_contig871.16848.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=817bp|location=Sequence derived from alignment at S-dermatodea_contig871:6738..7554+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTTCAGTGACTGGGCGCTACAAAGTACGCCGCAAAAAAACGAGGACCTTT
CCTTGAATGCCAGACTCCGGTAAGATCGAGTGCCGTTTTGAAACTCGACG
AATCACGATCCCTACCATTCGACCAGCCCAATAAATTGAGCCTGTCGGTA
CTGTGTCTAGTCCTACTCCGGTTCCGCCTGCCGAGAAGAGCGCACCCACC
ACGCGCGACACAATATTTACCGTCTGCCGAGACGAGCGCACCAACCACGC
GCGAAAAAATGTAACCGACCACTCCACGCAAGAGCGCAGAAATCGCTTGA
CACCAAACGGCCTACAACGGGAGCAGACGAGCCTAACACAATCGCCCGGT
TGAGCATGGTTGCACTCAACAGTGCGGACACCCAACATAACACCTACGAG
CGTCACCGACCCCGCCACGCCAGAGCGCAGAAATCGCTTGACACCAAACG
GCCTACAACGGGAGCAGACGACGAGCCCAACACAATTGCCCGGTTAAACA
TGGTTGCACTCAACAGTGCGGACACACAACATAACACAGCCTACGAGCGT
CACCGACCCCGCCACGGCCAGCGGTCAACTAGATCACGGGAGATACCAAT
ATTACCATCTAATCAACCAAGCTTTTCCGCCACGACGATAGCCTCGATGA
GCCTACACGCCCCCTTAACCATCTTGCGGAACGCCTTCCTCCTTTCGCGA
TCCCAGCCGCCGAGGGTGGGTCCGAAGTGTCTCCTCAAGAATACAAGGGT
GTTTGCCTCGAGCAGCGACGTGGGCCCCACTCTCCTTATCCCCGCCCGGC
GCGCGAATTCGCAACAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig871:6738..7554+

>mRNA_S-dermatodea_contig871.16848.1 ID=mRNA_S-dermatodea_contig871.16848.1|Name=mRNA_S-dermatodea_contig871.16848.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=924bp|location=Sequence derived from alignment at S-dermatodea_contig871:6738..7554+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTTGCACTCAACAGTGCGGACACCCAACATAACACCTACGAGCGTCA
CCGACCCCGCCACGCCAGAGCGCAGAAATCGCTTGACACCAAACGGCCTA
CAACGGGAGCAGACGACGAGCCCAACACAATTGCCCGGTTAAACATGGTT
GCACTCAACAGTGCGGACACACAACATAACACAGCCTACGAGCGTCACCG
ACCCCGCCACGGCCAGCGGTCAACTAGATCACGGGAGATACCAATATTAC
CATCTAATCAACCAAGCTTTTCCGCCACGACGATAGCCTCGATGAGCCTA
CACGCCCCCTTAACCATCTTGCGGAACGCCTTCCTCCTTTCGCGATCCCA
GCCGCCGAGGGTGGGTCCGAAGTGTCTCCTCAAGAATACAAGGGTGTTTG
CCTCGAGCAGCGACGTGGGCCCCACTCTCCTTATCCCCGCCCGGCGCGCG
AATTCGCAACACATGGTTGCACTCAACAGTGCGGACACCCAACATAACAC
CTACGAGCGTCACCGACCCCGCCACGCCAGAGCGCAGAAATCGCTTGACA
CCAAACGGCCTACAACGGGAGCAGACGACGAGCCCAACACAATTGCCCGG
TTAAACATGGTTGCACTCAACAGTGCGGACACACAACATAACACAGCCTA
CGAGCGTCACCGACCCCGCCACGGCCAGCGGTCAACTAGATCACGGGAGA
TACCAATATTACCATCTAATCAACCAAGCTTTTCCGCCACGACGATAGCC
TCGATGAGCCTACACGCCCCCTTAACCATCTTGCGGAACGCCTTCCTCCT
TTCGCGATCCCAGCCGCCGAGGGTGGGTCCGAAGTGTCTCCTCAAGAATA
CAAGGGTGTTTGCCTCGAGCAGCGACGTGGGCCCCACTCTCCTTATCCCC
GCCCGGCGCGCGAATTCGCAACAC
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