mRNA_S-dermatodea_contig871.16847.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig871.16847.1
Unique NamemRNA_S-dermatodea_contig871.16847.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig871.16847.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig871contigS-dermatodea_contig871:3229..3786 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size558
Cds size387
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig871.16847.1prot_S-dermatodea_contig871.16847.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig871 3337..3723 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925360.9111073-UTR-S-dermatodea_contig871:3228..33361622925360.9111073-UTR-S-dermatodea_contig871:3228..3336Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig871 3229..3336 +
1694079881.1271152-UTR-S-dermatodea_contig871:3228..33361694079881.1271152-UTR-S-dermatodea_contig871:3228..3336Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig871 3229..3336 +
1622925360.9415495-UTR-S-dermatodea_contig871:3723..37861622925360.9415495-UTR-S-dermatodea_contig871:3723..3786Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig871 3724..3786 +
1694079881.1432383-UTR-S-dermatodea_contig871:3723..37861694079881.1432383-UTR-S-dermatodea_contig871:3723..3786Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig871 3724..3786 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925360.923049-CDS-S-dermatodea_contig871:3336..37231622925360.923049-CDS-S-dermatodea_contig871:3336..3723Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig871 3337..3723 +
1694079881.1352556-CDS-S-dermatodea_contig871:3336..37231694079881.1352556-CDS-S-dermatodea_contig871:3336..3723Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig871 3337..3723 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig871.16847.1

>prot_S-dermatodea_contig871.16847.1 ID=prot_S-dermatodea_contig871.16847.1|Name=mRNA_S-dermatodea_contig871.16847.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=129bp
MKRDTDSECYKSGRKRKQKRVFWFLKRKEKHESVRLRTDGGVVLFGKSQG
KNHKGLLLYLHKYKLRSICARPQPLRGSLHGTSANICTHGEGGVGAEVEE
IGARHRRGSFARVSFIGVANFRKHTPGR*
back to top

mRNA from alignment at S-dermatodea_contig871:3229..3786+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig871.16847.1 ID=mRNA_S-dermatodea_contig871.16847.1|Name=mRNA_S-dermatodea_contig871.16847.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=558bp|location=Sequence derived from alignment at S-dermatodea_contig871:3229..3786+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AACGAATAGTGCTTCAAGGAACTGTTAAATAATGAAGCGAAAAAAACTTG
TTGAAATAATTTATTAGCTTAGCGACGGTTGAGTATCGGTCCCCAGCGGT
GGCATTGTATGAAGAGGGATACCGATAGCGAGTGTTACAAAAGCGGAAGA
AAACGCAAGCAAAAGCGCGTGTTCTGGTTTCTCAAAAGAAAAGAAAAACA
CGAGAGCGTTCGATTGAGAACAGACGGGGGGGTTGTGTTGTTTGGAAAGT
CACAGGGCAAGAATCACAAGGGACTGTTGTTGTACCTACACAAGTATAAG
CTCAGATCTATTTGCGCGCGTCCCCAGCCGTTGCGCGGTAGTTTACACGG
AACGTCTGCAAATATTTGTACGCATGGAGAGGGCGGTGTTGGCGCTGAAG
TGGAAGAGATTGGGGCGAGACACCGCCGTGGTAGCTTCGCGCGTGTTTCC
TTTATAGGAGTAGCGAACTTTCGAAAGCACACGCCGGGGCGATGAGGGGA
TGGGGTTCGTGCATGGCCCTACACAGGATGAAAGGCCTTGTGCTGTATGC
AGGGCGGG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig871:3229..3786+

>mRNA_S-dermatodea_contig871.16847.1 ID=mRNA_S-dermatodea_contig871.16847.1|Name=mRNA_S-dermatodea_contig871.16847.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=774bp|location=Sequence derived from alignment at S-dermatodea_contig871:3229..3786+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAAGAGGGATACCGATAGCGAGTGTTACAAAAGCGGAAGAAAACGCAA
GCAAAAGCGCGTGTTCTGGTTTCTCAAAAGAAAAGAAAAACACGAGAGCG
TTCGATTGAGAACAGACGGGGGGGTTGTGTTGTTTGGAAAGTCACAGGGC
AAGAATCACAAGGGACTGTTGTTGTACCTACACAAGTATAAGCTCAGATC
TATTTGCGCGCGTCCCCAGCCGTTGCGCGGTAGTTTACACGGAACGTCTG
CAAATATTTGTACGCATGGAGAGGGCGGTGTTGGCGCTGAAGTGGAAGAG
ATTGGGGCGAGACACCGCCGTGGTAGCTTCGCGCGTGTTTCCTTTATAGG
AGTAGCGAACTTTCGAAAGCACACGCCGGGGCGATGAATGAAGAGGGATA
CCGATAGCGAGTGTTACAAAAGCGGAAGAAAACGCAAGCAAAAGCGCGTG
TTCTGGTTTCTCAAAAGAAAAGAAAAACACGAGAGCGTTCGATTGAGAAC
AGACGGGGGGGTTGTGTTGTTTGGAAAGTCACAGGGCAAGAATCACAAGG
GACTGTTGTTGTACCTACACAAGTATAAGCTCAGATCTATTTGCGCGCGT
CCCCAGCCGTTGCGCGGTAGTTTACACGGAACGTCTGCAAATATTTGTAC
GCATGGAGAGGGCGGTGTTGGCGCTGAAGTGGAAGAGATTGGGGCGAGAC
ACCGCCGTGGTAGCTTCGCGCGTGTTTCCTTTATAGGAGTAGCGAACTTT
CGAAAGCACACGCCGGGGCGATGA
back to top