mRNA_S-dermatodea_contig8707.16846.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8707.16846.1
Unique NamemRNA_S-dermatodea_contig8707.16846.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8707.16846.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8707contigS-dermatodea_contig8707:4017..5464 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size400
Cds size396
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8707.16846.1prot_S-dermatodea_contig8707.16846.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8707 4017..5462 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925360.8590174-CDS-S-dermatodea_contig8707:4016..41881622925360.8590174-CDS-S-dermatodea_contig8707:4016..4188Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8707 4017..4188 +
1694079881.0964565-CDS-S-dermatodea_contig8707:4016..41881694079881.0964565-CDS-S-dermatodea_contig8707:4016..4188Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8707 4017..4188 +
1622925360.8704875-CDS-S-dermatodea_contig8707:4777..48731622925360.8704875-CDS-S-dermatodea_contig8707:4777..4873Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8707 4778..4873 +
1694079881.1067855-CDS-S-dermatodea_contig8707:4777..48731694079881.1067855-CDS-S-dermatodea_contig8707:4777..4873Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8707 4778..4873 +
1622925360.8803527-CDS-S-dermatodea_contig8707:5334..54621622925360.8803527-CDS-S-dermatodea_contig8707:5334..5462Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8707 5335..5462 +
1694079881.116913-CDS-S-dermatodea_contig8707:5334..54621694079881.116913-CDS-S-dermatodea_contig8707:5334..5462Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8707 5335..5462 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8707.16846.1

>prot_S-dermatodea_contig8707.16846.1 ID=prot_S-dermatodea_contig8707.16846.1|Name=mRNA_S-dermatodea_contig8707.16846.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=132bp
PTRPSSTDGPRTSTSLDSLPQSVPSSAPCKAEASRSHRPTDLQSVWLFSA
NHLKSCEASKRAGLLCVSIWRNSTRTCGRRGGTSSVASAGVTRSPEESAT
TPRWKPRDCRSHHEPRGSHPWPSTSQATPTCR
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mRNA from alignment at S-dermatodea_contig8707:4017..5464+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8707.16846.1 ID=mRNA_S-dermatodea_contig8707.16846.1|Name=mRNA_S-dermatodea_contig8707.16846.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1448bp|location=Sequence derived from alignment at S-dermatodea_contig8707:4017..5464+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCAACACGACCTTCATCTACTGACGGACCAAGGACTTCGACGTCGCTGGA
TAGTCTACCCCAGTCAGTGCCCTCGTCGGCTCCGTGCAAGGCCGAAGCAA
GCAGGAGCCACCGCCCCACTGACCTACAGTCTGTCTGGCTGTTCTCGGCA
AATCATCTCAAGAGTTGCGAAGGTGAGAGGATCGGCCGGGTCTGCCGTCC
GGTGCAAGCACACGGGTCTATGGCAATGGCGATGATGTCGATGGCCTCGT
GTTGCCTTCTCAGGGCCTGTCTGGCGTGCCAGCTCTAGTGCTTGCGGAAC
CTCTCGCTGCACGAAACGGGCGCGTATAGGCGCCCCTGTCTTGACACCAA
ATGCGAGTTGATTGGTTTGGCGCCAGGGTTGTTCGATTCCGGGAGCGAGA
GGGAGGCAACGAATGAATGTGATCGGGCAATTCAAACGTTCGACCGGTTT
CCTCGAATGCTGCCATGCAGAGCTGCTGGCTTCCTCGGAGGAGACGAACG
CGCGGCGTTCCGCTAGGTTTGGCAGCGCGTGAAATAATTGGCAGGGTGTT
TTAATATAGTAGCGCACCTGAGAGAAAGTCAATGGTTGTCTCGGGCACTC
GTTGACAGCTCATACTTTACCTGAGCGCGAAGGTCAACATCAATCCTACT
ACCCTTGTGCTCACGAGGGTTGTTTTTTATTTTTCTGAAACATATCAATA
TTTTGTTCGATTCACCCCCTTCTCGAATCCTCTGTTTGCCAATGGCGTAT
GCATAAATCAGCTAGCAAGAGGGCGGGACTCCTTTGCGTATCAATATGGC
GAAATTCAACGCGGACTTGTGGACGCCGGGGCGGGACCAGTTCGGTCGCT
TCTGCTGGTGAGAATTATCTTCAATGTTGAATGTGAACGCCGAGTAGTTT
ATCAATCTCCGTCTTCGCAACTTACTTCCTGCACAAGAACCGTTACTATT
GGATGGTACTATATACGTCGCCCCGTTTACAATACTCGGATTGCGCCGTG
CGTACCACAGCCCCCCGACAATCGACCCGATCGTATCCGTGACATAAGCC
GCCCCGTACCACGGTGTCTCGGAATAATCAAGAGACGCTGTCCCTCTTCC
CCGCCGGTGCACACACGAATGTGTCACTGACGGCGTCCTCCGGGACGCAG
AGTGGGTCTTCTAGTAAAACAAAGTACAAGTGAAATTGCTATTGCTGCTC
TTGTCTCAGCAGTGAAGCTTGTCGTGTAGCAGTGAATCTTCTTGTCGTGT
ACAGTAGTTATATTACAGCTGGAAAAATAATACCGCCTCGCGGCTCCCGC
CTCATCTTGTACAAGCAGGTGTAACAAGATCTCCGGAAGAATCAGCTACA
ACCCCTCGTTGGAAACCCCGGGATTGCCGGAGCCACCACGAGCCGAGAGG
GTCGCACCCTTGGCCCTCAACTTCGCAAGCAACGCCAACGTGCCGGTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8707:4017..5464+

>mRNA_S-dermatodea_contig8707.16846.1 ID=mRNA_S-dermatodea_contig8707.16846.1|Name=mRNA_S-dermatodea_contig8707.16846.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at S-dermatodea_contig8707:4017..5464+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCAACACGACCTTCATCTACTGACGGACCAAGGACTTCGACGTCGCTGGA
TAGTCTACCCCAGTCAGTGCCCTCGTCGGCTCCGTGCAAGGCCGAAGCAA
GCAGGAGCCACCGCCCCACTGACCTACAGTCTGTCTGGCTGTTCTCGGCA
AATCATCTCAAGAGTTGCGAAGCCAACACGACCTTCATCTACTGACGGAC
CAAGGACTTCGACGTCGCTGGATAGTCTACCCCAGTCAGTGCCCTCGTCG
GCTCCGTGCAAGGCCGAAGCAAGCAGGAGCCACCGCCCCACTGACCTACA
GTCTGTCTGGCTGTTCTCGGCAAATCATCTCAAGAGTTGCGAAGCTAGCA
AGAGGGCGGGACTCCTTTGCGTATCAATATGGCGAAATTCAACGCGGACT
TGTGGACGCCGGGGCGGGACCAGTTCGGTCGCTTCTGCTGCTAGCAAGAG
GGCGGGACTCCTTTGCGTATCAATATGGCGAAATTCAACGCGGACTTGTG
GACGCCGGGGCGGGACCAGTTCGGTCGCTTCTGCTGGTGTAACAAGATCT
CCGGAAGAATCAGCTACAACCCCTCGTTGGAAACCCCGGGATTGCCGGAG
CCACCACGAGCCGAGAGGGTCGCACCCTTGGCCCTCAACTTCGCAAGCAA
CGCCAACGTGCCGGGTGTAACAAGATCTCCGGAAGAATCAGCTACAACCC
CTCGTTGGAAACCCCGGGATTGCCGGAGCCACCACGAGCCGAGAGGGTCG
CACCCTTGGCCCTCAACTTCGCAAGCAACGCCAACGTGCCGG
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