mRNA_S-dermatodea_contig87063.16845.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig87063.16845.1
Unique NamemRNA_S-dermatodea_contig87063.16845.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig87063.16845.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig87063contigS-dermatodea_contig87063:68..649 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size154
Cds size153
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925360.8112428-CDS-S-dermatodea_contig87063:67..1451622925360.8112428-CDS-S-dermatodea_contig87063:67..145Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig87063 68..145 -
1694079881.0749047-CDS-S-dermatodea_contig87063:67..1451694079881.0749047-CDS-S-dermatodea_contig87063:67..145Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig87063 68..145 -
1622925360.8228352-CDS-S-dermatodea_contig87063:574..6491622925360.8228352-CDS-S-dermatodea_contig87063:574..649Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig87063 575..649 -
1694079881.0856946-CDS-S-dermatodea_contig87063:574..6491694079881.0856946-CDS-S-dermatodea_contig87063:574..649Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig87063 575..649 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig87063.16845.1prot_S-dermatodea_contig87063.16845.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig87063 68..649 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig87063.16845.1

>prot_S-dermatodea_contig87063.16845.1 ID=prot_S-dermatodea_contig87063.16845.1|Name=mRNA_S-dermatodea_contig87063.16845.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=51bp
PPVVVLPVAVTAVQKPQVIAAVADKVKTVVLEAFRQGRARMDGGASGAEA
L
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mRNA from alignment at S-dermatodea_contig87063:68..649-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig87063.16845.1 ID=mRNA_S-dermatodea_contig87063.16845.1|Name=mRNA_S-dermatodea_contig87063.16845.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=582bp|location=Sequence derived from alignment at S-dermatodea_contig87063:68..649- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCGCCCGTCGTCGTACTGCCTGTTGCCGTGACTGCAGTGCAAAAGCCGCA
AGTCATTGCTGCCGTTGCTGATAAGGTGATAGGTGGCGTAGCCCCGCCCG
CTGCCATACCGTTATTCCTTGAACCACCCTTGGTCGCGCCGCCGGTTGTA
CCGTTTGTTGTTGAACCACCTTTGGTCGCGCCGCCTGTTGTAGCACCACC
GGCGGCAGCGCCGACGGTTGTACTGCAACCAATCCCCCCAGTTGTACCAG
CAGCACGATGGGCGTACGCCAATCTTGATCTCAGACGTGTGTGGGCTATC
CCGCAACTCCCTTTTCAGGATCGTGGAGATGTAACCGAACTCGTTCACTT
TATCCAAGCAGTCACTCGCGCTGGTGAAGATATTCGCGCCGCAGGAGACC
CCGCGTATGTTTACGAAGCCGCAACCGACGTCGCTTGGACTCGCGGATGG
GAGCGTTGTTTAGAGCAACACGTTATTAATTCTTGTCGTCGCACGGTCAC
ACAGGTGAAGACGGTCGTGCTTGAAGCTTTCCGTCAGGGCAGGGCACGCA
TGGACGGAGGAGCAAGCGGAGCGGAGGCTTTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig87063:68..649-

>mRNA_S-dermatodea_contig87063.16845.1 ID=mRNA_S-dermatodea_contig87063.16845.1|Name=mRNA_S-dermatodea_contig87063.16845.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=306bp|location=Sequence derived from alignment at S-dermatodea_contig87063:68..649- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCGCCCGTCGTCGTACTGCCTGTTGCCGTGACTGCAGTGCAAAAGCCGCA
AGTCATTGCTGCCGTTGCTGATAAGCCGCCCGTCGTCGTACTGCCTGTTG
CCGTGACTGCAGTGCAAAAGCCGCAAGTCATTGCTGCCGTTGCTGATAAG
GTGAAGACGGTCGTGCTTGAAGCTTTCCGTCAGGGCAGGGCACGCATGGA
CGGAGGAGCAAGCGGAGCGGAGGCTTTGGTGAAGACGGTCGTGCTTGAAG
CTTTCCGTCAGGGCAGGGCACGCATGGACGGAGGAGCAAGCGGAGCGGAG
GCTTTG
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