mRNA_S-dermatodea_contig87037.16843.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_S-dermatodea_contig87037.16843.1
Unique Name	mRNA_S-dermatodea_contig87037.16843.1
Type	mRNA
Organism	Saccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)

Homology

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BLAST of mRNA_S-dermatodea_contig87037.16843.1 vs. uniprot
Match: D7G092_ECTSI (Smr domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G092_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 1.780e-15
Identity = 35/50 (70.00%), Postives = 40/50 (80.00%), Query Frame = 1

Query:    7 QVLARKMMDLHGLHVAEAIEVLDRELAVLLQNEIDSVRVLAGTGHHSKGP 156
            QV  RK +DLHGLHVAEA+EVLDRE+  L +  + SVRVL GTGHHSKGP
Sbjct:   27 QVFQRKTLDLHGLHVAEAVEVLDREMGALAERGLCSVRVLTGTGHHSKGP 76

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BLAST of mRNA_S-dermatodea_contig87037.16843.1 vs. uniprot
Match: A0A6H5JKG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKG2_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 5.800e-14
Identity = 36/50 (72.00%), Postives = 39/50 (78.00%), Query Frame = 1

Query:    7 QVLARKMMDLHGLHVAEAIEVLDRELAVLLQNEIDSVRVLAGTGHHSKGP 156
            QV  RK MDLHGLHVAEA+EVLDRE+  L    + SVRVL GTGHHSKGP
Sbjct:  554 QVFQRKTMDLHGLHVAEAVEVLDREMGALAARGLCSVRVLTGTGHHSKGP 603

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BLAST of mRNA_S-dermatodea_contig87037.16843.1 vs. uniprot
Match: G4ZFB7_PHYSP (Uncharacterized protein n=18 Tax=Phytophthora TaxID=4783 RepID=G4ZFB7_PHYSP)

HSP 1 Score: 60.8 bits (146), Expect = 1.740e-9
Identity = 28/52 (53.85%), Postives = 37/52 (71.15%), Query Frame = 1

Query:    1 PVQVLARKMMDLHGLHVAEAIEVLDRELAVLLQNEIDSVRVLAGTGHHSKGP 156
            P Q+   +MMDLHGLHVAEA+E L + L  L    +DS+ ++ G+GHHSKGP
Sbjct:  511 PNQLYMDRMMDLHGLHVAEAVEFLTQMLPKLADESVDSIYLVTGSGHHSKGP 562

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BLAST of mRNA_S-dermatodea_contig87037.16843.1 vs. uniprot
Match: H3GJW5_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GJW5_PHYRM)

HSP 1 Score: 60.5 bits (145), Expect = 2.380e-9
Identity = 28/52 (53.85%), Postives = 37/52 (71.15%), Query Frame = 1

Query:    1 PVQVLARKMMDLHGLHVAEAIEVLDRELAVLLQNEIDSVRVLAGTGHHSKGP 156
            P Q+   +MMDLHGLHVAEA+E L + L  L    +DS+ ++ G+GHHSKGP
Sbjct:  506 PSQLYMDRMMDLHGLHVAEAVEFLTQMLPKLADEGVDSIYLVTGSGHHSKGP 557

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BLAST of mRNA_S-dermatodea_contig87037.16843.1 vs. uniprot
Match: A0A0W8DKZ9_PHYNI (Membrane metallo-endopeptidase 1 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DKZ9_PHYNI)

HSP 1 Score: 60.1 bits (144), Expect = 3.040e-9
Identity = 28/52 (53.85%), Postives = 37/52 (71.15%), Query Frame = 1

Query:    1 PVQVLARKMMDLHGLHVAEAIEVLDRELAVLLQNEIDSVRVLAGTGHHSKGP 156
            P Q+   +MMDLHGLHVAEA+E L + L  L    +DS+ ++ G+GHHSKGP
Sbjct:  251 PNQLYMDRMMDLHGLHVAEAVEFLTQMLPKLADEGVDSIYLVTGSGHHSKGP 302

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BLAST of mRNA_S-dermatodea_contig87037.16843.1 vs. uniprot
Match: A0A0W8C524_PHYNI (NEDD4-binding protein 2 n=7 Tax=Phytophthora TaxID=4783 RepID=A0A0W8C524_PHYNI)

HSP 1 Score: 60.1 bits (144), Expect = 3.250e-9
Identity = 28/52 (53.85%), Postives = 37/52 (71.15%), Query Frame = 1

Query:    1 PVQVLARKMMDLHGLHVAEAIEVLDRELAVLLQNEIDSVRVLAGTGHHSKGP 156
            P Q+   +MMDLHGLHVAEA+E L + L  L    +DS+ ++ G+GHHSKGP
Sbjct:  481 PNQLYMDRMMDLHGLHVAEAVEFLTQMLPKLADEGVDSIYLVTGSGHHSKGP 532

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BLAST of mRNA_S-dermatodea_contig87037.16843.1 vs. uniprot
Match: M4B571_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B571_HYAAE)

HSP 1 Score: 60.1 bits (144), Expect = 3.250e-9
Identity = 28/52 (53.85%), Postives = 37/52 (71.15%), Query Frame = 1

Query:    1 PVQVLARKMMDLHGLHVAEAIEVLDRELAVLLQNEIDSVRVLAGTGHHSKGP 156
            P Q+   +MMDLHGLHVAEA+E L + L  L    +DS+ ++ G+GHHSKGP
Sbjct:  512 PSQLYMDRMMDLHGLHVAEAVEFLAQMLPKLADEGVDSIYLVTGSGHHSKGP 563

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BLAST of mRNA_S-dermatodea_contig87037.16843.1 vs. uniprot
Match: A0A662WWS8_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WWS8_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 3.250e-9
Identity = 27/52 (51.92%), Postives = 37/52 (71.15%), Query Frame = 1

Query:    1 PVQVLARKMMDLHGLHVAEAIEVLDRELAVLLQNEIDSVRVLAGTGHHSKGP 156
            P Q+   +MMDLHGLHVAEA+E L + L  L    +D++ ++ G+GHHSKGP
Sbjct:  595 PSQLYMERMMDLHGLHVAEAVEFLTQMLPKLADEGVDNIYLVTGSGHHSKGP 646

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BLAST of mRNA_S-dermatodea_contig87037.16843.1 vs. uniprot
Match: D0MT46_PHYIT (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=D0MT46_PHYIT)

HSP 1 Score: 59.7 bits (143), Expect = 4.440e-9
Identity = 28/52 (53.85%), Postives = 37/52 (71.15%), Query Frame = 1

Query:    1 PVQVLARKMMDLHGLHVAEAIEVLDRELAVLLQNEIDSVRVLAGTGHHSKGP 156
            P Q+   +MMDLHGLHVAEA+E L + L  L    +DS+ ++ G+GHHSKGP
Sbjct:  505 PNQLYMDRMMDLHGLHVAEAVEFLAQMLPKLADEGVDSIYLVTGSGHHSKGP 556

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BLAST of mRNA_S-dermatodea_contig87037.16843.1 vs. uniprot
Match: F0WYU9_9STRA (Uncharacterized protein AlNc14C400G11359 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WYU9_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 6.070e-9
Identity = 27/50 (54.00%), Postives = 37/50 (74.00%), Query Frame = 1

Query:    7 QVLARKMMDLHGLHVAEAIEVLDRELAVLLQNEIDSVRVLAGTGHHSKGP 156
            QV   ++MDLHGLHV EA+E L   L  L ++ +D+VR++ GTGHHS+GP
Sbjct:  453 QVYRDRLMDLHGLHVVEAVEFLRSWLPQLAEDGLDTVRIVTGTGHHSRGP 502

The following BLAST results are available for this feature:

BLAST of mRNA_S-dermatodea_contig87037.16843.1 vs. uniprot

BLAST of mRNA_S-dermatodea_contig87037.16843.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G092_ECTSI	1.780e-15	70.00	Smr domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A6H5JKG2_9PHAE	5.800e-14	72.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
G4ZFB7_PHYSP	1.740e-9	53.85	Uncharacterized protein n=18 Tax=Phytophthora TaxI...	[more]
H3GJW5_PHYRM	2.380e-9	53.85	Uncharacterized protein n=1 Tax=Phytophthora ramor...	[more]
A0A0W8DKZ9_PHYNI	3.040e-9	53.85	Membrane metallo-endopeptidase 1 n=1 Tax=Phytophth...	[more]
A0A0W8C524_PHYNI	3.250e-9	53.85	NEDD4-binding protein 2 n=7 Tax=Phytophthora TaxID...	[more]
M4B571_HYAAE	3.250e-9	53.85	Uncharacterized protein n=1 Tax=Hyaloperonospora a...	[more]
A0A662WWS8_9STRA	3.250e-9	51.92	Uncharacterized protein n=2 Tax=Nothophytophthora ...	[more]
D0MT46_PHYIT	4.440e-9	53.85	Uncharacterized protein n=4 Tax=Phytophthora TaxID...	[more]
F0WYU9_9STRA	6.070e-9	54.00	Uncharacterized protein AlNc14C400G11359 n=1 Tax=A...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-dermatodea_contig87037	contig	S-dermatodea_contig87037:377..532 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	no signal peptide or anchor
Exons	1
Model size	156
Cds size	132
Stop	0
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622925360.7261-CDS-S-dermatodea_contig87037:376..508	1622925360.7261-CDS-S-dermatodea_contig87037:376..508	Saccorhiza dermatodea SderLu1190fm monoicous	CDS	S-dermatodea_contig87037 377..508 -
1694079881.043468-CDS-S-dermatodea_contig87037:376..508	1694079881.043468-CDS-S-dermatodea_contig87037:376..508	Saccorhiza dermatodea SderLu1190fm monoicous	CDS	S-dermatodea_contig87037 377..508 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622925360.7422287-UTR-S-dermatodea_contig87037:508..532	1622925360.7422287-UTR-S-dermatodea_contig87037:508..532	Saccorhiza dermatodea SderLu1190fm monoicous	UTR	S-dermatodea_contig87037 509..532 -
1694079881.0550492-UTR-S-dermatodea_contig87037:508..532	1694079881.0550492-UTR-S-dermatodea_contig87037:508..532	Saccorhiza dermatodea SderLu1190fm monoicous	UTR	S-dermatodea_contig87037 509..532 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_S-dermatodea_contig87037.16843.1	prot_S-dermatodea_contig87037.16843.1	Saccorhiza dermatodea SderLu1190fm monoicous	polypeptide	S-dermatodea_contig87037 377..508 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at S-dermatodea_contig87037:377..532-
coding sequence from alignment at S-dermatodea_contig87037:377..532-

protein sequence of mRNA_S-dermatodea_contig87037.16843.1

>prot_S-dermatodea_contig87037.16843.1 ID=prot_S-dermatodea_contig87037.16843.1|Name=mRNA_S-dermatodea_contig87037.16843.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=44bp
MMDLHGLHVAEAIEVLDRELAVLLQNEIDSVRVLAGTGHHSKGP

mRNA from alignment at S-dermatodea_contig87037:377..532-

Legend: UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_S-dermatodea_contig87037.16843.1 ID=mRNA_S-dermatodea_contig87037.16843.1|Name=mRNA_S-dermatodea_contig87037.16843.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=156bp|location=Sequence derived from alignment at S-dermatodea_contig87037:377..532- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCGGTACAGGTGTTGGCGAGAAAGATGATGGACCTTCACGGGCTGCACGT
GGCCGAAGCTATCGAGGTGTTGGACAGGGAGTTGGCGGTGTTGCTCCAGA
ACGAAATCGACAGCGTCCGAGTGCTCGCCGGAACGGGTCACCACAGCAAG
GGCCCA

Coding sequence (CDS) from alignment at S-dermatodea_contig87037:377..532-

>mRNA_S-dermatodea_contig87037.16843.1 ID=mRNA_S-dermatodea_contig87037.16843.1|Name=mRNA_S-dermatodea_contig87037.16843.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=264bp|location=Sequence derived from alignment at S-dermatodea_contig87037:377..532- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATGGACCTTCACGGGCTGCACGTGGCCGAAGCTATCGAGGTGTTGGA
CAGGGAGTTGGCGGTGTTGCTCCAGAACGAAATCGACAGCGTCCGAGTGC
TCGCCGGAACGGGTCACCACAGCAAGGGCCCAATGATGGACCTTCACGGG
CTGCACGTGGCCGAAGCTATCGAGGTGTTGGACAGGGAGTTGGCGGTGTT
GCTCCAGAACGAAATCGACAGCGTCCGAGTGCTCGCCGGAACGGGTCACC
ACAGCAAGGGCCCA