prot_S-dermatodea_contig87007.16839.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig87007.16839.1
Unique Nameprot_S-dermatodea_contig87007.16839.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length130
Homology
BLAST of mRNA_S-dermatodea_contig87007.16839.1 vs. uniprot
Match: Q8QN66_ESV1K (EsV-1-224 n=2 Tax=root TaxID=1 RepID=Q8QN66_ESV1K)

HSP 1 Score: 147 bits (370), Expect = 9.250e-41
Identity = 73/125 (58.40%), Postives = 99/125 (79.20%), Query Frame = 0
Query:    8 VPWVERYRPSRLVDVGGNAHVIDALRSYSSIDDMPHLLLHGPPGSGKTSAILAIARQFYGGTVLSSMVLELNASDVRGVHTMRNQIQPFTKCLSVTDAT--AVKLVVLDEADSLTNLSQCALRHL 130
            V W E++RP+RL DV GN HVI AL+S++S++  P+++LHGPPGSGKTS+I+++A+ F+G T +S M LELNA D R + TMR+QI  FT+C SVTD +  A+KLV+LDEAD LT+ +Q ALRHL
Sbjct:    2 VSWTEKHRPTRLQDVSGNDHVIRALQSFTSMETTPNMILHGPPGSGKTSSIISMAKSFFGRTNISIMTLELNAGDSRSIGTMRDQIHFFTRCSSVTDRSTNALKLVILDEADGLTSCAQRALRHL 126          
BLAST of mRNA_S-dermatodea_contig87007.16839.1 vs. uniprot
Match: A0A6H5KU33_9PHAE (MEP9 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU33_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 4.080e-38
Identity = 73/125 (58.40%), Postives = 99/125 (79.20%), Query Frame = 0
Query:    8 VPWVERYRPSRLVDVGGNAHVIDALRSYSSIDDMPHLLLHGPPGSGKTSAILAIARQFYGGTVLSSMVLELNASDVRGVHTMRNQIQPFTKCLSVTDAT--AVKLVVLDEADSLTNLSQCALRHL 130
            V W E++RP+RL DV GN  VI AL+++ S++  P+L+LHGPPGSGKTS+IL++A+ F+GGT +S+M LELNA D R + TMR+QI  FT+C SV+D +  A+KLV+LDEAD LT+ +Q ALRHL
Sbjct:    2 VSWTEKHRPTRLQDVSGNDQVIRALQTFKSMEATPNLILHGPPGSGKTSSILSMAKSFFGGTNISTMTLELNAGDSRSIGTMRDQINFFTRCSSVSDKSTNALKLVILDEADGLTSCAQRALRHL 126          
BLAST of mRNA_S-dermatodea_contig87007.16839.1 vs. uniprot
Match: A0A5D3CEZ2_CUCME (Replication factor C subunit 5 n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3CEZ2_CUCME)

HSP 1 Score: 122 bits (307), Expect = 6.300e-33
Identity = 64/125 (51.20%), Postives = 88/125 (70.40%), Query Frame = 0
Query:    7 AVPWVERYRPSRLVDVGGNAHVIDALRSYSSIDDMPHLLLHGPPGSGKTSAILAIARQFYGGTVLSSMVLELNASDVRGVHTMRNQIQPF--TKCLSVTDATAVKLVVLDEADSLTNLSQCALRH 129
            A+PWVE++RP  L DV  +  ++D +   +S + +PHLLL+GPPG+GKTS ILA+AR+ YG T   +M+LELNASD RG+  +R QIQ F  T+  S     +VKLV+LDEAD++T  +Q ALR 
Sbjct:   39 AIPWVEKFRPKSLADVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG-TNYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRR 162          
BLAST of mRNA_S-dermatodea_contig87007.16839.1 vs. uniprot
Match: A0A2V0P166_9CHLO (Replication factor C subunit 5 n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P166_9CHLO)

HSP 1 Score: 126 bits (317), Expect = 1.480e-32
Identity = 67/123 (54.47%), Postives = 85/123 (69.11%), Query Frame = 0
Query:    7 AVPWVERYRPSRLVDVGGNAHVIDALRSYSSIDDMPHLLLHGPPGSGKTSAILAIARQFYGGTVLSSMVLELNASDVRGVHTMRNQIQPFTKCLSVTDATAVKLVVLDEADSLTNLSQCALRH 129
            A PWVE+YRP  L DV  ++ +ID +R  +S + +PHLLL+GPPG+GKTS ILA+ARQ YG   L +M LELNASD RG+  +R QIQ F    SV   T  KLV+LDE D++T  +Q ALR 
Sbjct:   41 AAPWVEKYRPKTLDDVAAHSEIIDTIRRLTSENRLPHLLLYGPPGTGKTSTILAVARQIYG-KALQNMTLELNASDERGIDVVRQQIQDFASTRSVFSNT-FKLVILDECDAMTKDAQFALRR 161          
BLAST of mRNA_S-dermatodea_contig87007.16839.1 vs. uniprot
Match: A0A1V2L724_CYBFA (Replication factor C subunit 3 n=2 Tax=Cyberlindnera fabianii TaxID=36022 RepID=A0A1V2L724_CYBFA)

HSP 1 Score: 125 bits (315), Expect = 1.480e-32
Identity = 63/129 (48.84%), Postives = 88/129 (68.22%), Query Frame = 0
Query:    2 RHTHTAVPWVERYRPSRLVDVGGNAHVIDALRSYSSIDDMPHLLLHGPPGSGKTSAILAIARQFYGGTVLSSMVLELNASDVRGVHTMRNQIQPFTKCLSVTDATAVKLVVLDEADSLTNLSQCALRHL 130
            + T   +PWVE+YRPS L DV G   V+D +R +     +PHLL +GPPG+GKTS I+A+AR+ YG     +MVLELNASD RG+  +RNQI+ F   + +      KL++LDEAD++TN++Q ALR +
Sbjct:    4 QRTEENLPWVEKYRPSSLDDVYGQPEVVDTVRKFVHDGRLPHLLFYGPPGTGKTSTIIALAREIYGSNY-KNMVLELNASDDRGIDVVRNQIKDFASTMQIFSK-GFKLIILDEADAMTNVAQNALRRI 130          
BLAST of mRNA_S-dermatodea_contig87007.16839.1 vs. uniprot
Match: A0A376B591_9ASCO (Probable Replication factor C subunit 3 n=1 Tax=Saccharomycodes ludwigii TaxID=36035 RepID=A0A376B591_9ASCO)

HSP 1 Score: 125 bits (315), Expect = 1.700e-32
Identity = 59/130 (45.38%), Postives = 89/130 (68.46%), Query Frame = 0
Query:    1 TRHTHTAVPWVERYRPSRLVDVGGNAHVIDALRSYSSIDDMPHLLLHGPPGSGKTSAILAIARQFYGGTVLSSMVLELNASDVRGVHTMRNQIQPFTKCLSVTDATAVKLVVLDEADSLTNLSQCALRHL 130
            T+ T   +PW+E+YRP  L DV G  +V++ +R + +   +PHLL +GPPG+GKTS ILA+A++ YG     +M+LELNASD RG+  +RNQI+ F     +    + KL++LDEAD++T+ +Q ALR +
Sbjct:    6 TKSTTENLPWIEKYRPESLDDVYGQTNVVETVRRFVTEGKLPHLLFYGPPGTGKTSTILALAKEIYGPKHYKNMILELNASDDRGIDVVRNQIKDFASTRQIFAQKSFKLIILDEADAMTSAAQNALRRI 135          
BLAST of mRNA_S-dermatodea_contig87007.16839.1 vs. uniprot
Match: UPI0006265908 (replication factor C subunit 5 isoform X1 n=2 Tax=Orussus abietinus TaxID=222816 RepID=UPI0006265908)

HSP 1 Score: 125 bits (315), Expect = 2.860e-32
Identity = 62/126 (49.21%), Postives = 88/126 (69.84%), Query Frame = 0
Query:    5 HTAVPWVERYRPSRLVDVGGNAHVIDALRSYSSIDDMPHLLLHGPPGSGKTSAILAIARQFYGGTVLSSMVLELNASDVRGVHTMRNQIQPFTKCLSVTDATAVKLVVLDEADSLTNLSQCALRHL 130
            H  +PWVE+YRPS+LVD+  +  +ID +  +  ++ +PHLL +GPPG+GKTS ILA A+Q Y     +SMVLELNASD RG+  +R QI  F    ++ +A   KL++LDEAD++TN +Q ALR +
Sbjct:   41 HKNLPWVEKYRPSKLVDLISHEEIIDTINKFIRVNQLPHLLFYGPPGTGKTSTILACAKQLYTPAQFTSMVLELNASDDRGIGIVRGQILSFASTRTIFNA-GFKLIILDEADAMTNDAQNALRRI 165          
BLAST of mRNA_S-dermatodea_contig87007.16839.1 vs. uniprot
Match: A0A5J4XVJ0_9CHLO (Replication factor C subunit 5-like n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XVJ0_9CHLO)

HSP 1 Score: 125 bits (313), Expect = 3.690e-32
Identity = 65/129 (50.39%), Postives = 89/129 (68.99%), Query Frame = 0
Query:    1 TRHTHTAVPWVERYRPSRLVDVGGNAHVIDALRSYSSIDDMPHLLLHGPPGSGKTSAILAIARQFYGGTVLSSMVLELNASDVRGVHTMRNQIQPFTKCLSVTDATAVKLVVLDEADSLTNLSQCALRH 129
            T H+    PWVE++RP  L +V  +  +ID +R   + + +PHLLL+GPPG+GKTS ILA+ARQ YGG+ + SMVLELNASD RG+  +R QIQ F    ++  +T  KLV+LDE D++T  +Q ALR 
Sbjct:   12 TSHSKQDAPWVEKFRPKSLDEVAAHKEIIDTIRRLVNENRLPHLLLYGPPGTGKTSTILAVARQMYGGS-MGSMVLELNASDDRGIGIVRQQIQDFVSTRTIF-STKFKLVILDECDAMTKDAQFALRR 138          
BLAST of mRNA_S-dermatodea_contig87007.16839.1 vs. uniprot
Match: A0A835DJA5_9MAGN (AAA domain-containing protein n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A835DJA5_9MAGN)

HSP 1 Score: 122 bits (305), Expect = 4.220e-32
Identity = 64/125 (51.20%), Postives = 86/125 (68.80%), Query Frame = 0
Query:    7 AVPWVERYRPSRLVDVGGNAHVIDALRSYSSIDDMPHLLLHGPPGSGKTSAILAIARQFYGGTVLSSMVLELNASDVRGVHTMRNQIQPF--TKCLSVTDATAVKLVVLDEADSLTNLSQCALRH 129
            A PWVE+YRP  L DV  +  ++D +   +S + +PHLLL+GPPG+GKTS ILA+AR+ YG     +M+LELNASD RG+  +R QIQ F  T+  S     +VKLV+LDEAD++T  +Q ALR 
Sbjct:   37 ATPWVEKYRPQSLADVAAHRDIVDTIDRLTSENKLPHLLLYGPPGTGKTSTILAVARKLYGAQ-FHNMILELNASDDRGIDVVRKQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRR 160          
BLAST of mRNA_S-dermatodea_contig87007.16839.1 vs. uniprot
Match: A0A834LAP3_RHOSS (AAA domain-containing protein n=3 Tax=Ericales TaxID=41945 RepID=A0A834LAP3_RHOSS)

HSP 1 Score: 126 bits (317), Expect = 4.600e-32
Identity = 66/125 (52.80%), Postives = 89/125 (71.20%), Query Frame = 0
Query:    7 AVPWVERYRPSRLVDVGGNAHVIDALRSYSSIDDMPHLLLHGPPGSGKTSAILAIARQFYGGTVLSSMVLELNASDVRGVHTMRNQIQPF--TKCLSVTDATAVKLVVLDEADSLTNLSQCALRH 129
            A PWVE+YRP  L DV  +  ++D +   +S + +PHLLL+GPPG+GKTS ILA+AR+ YG T + +MVLELNASD RG+  +R QIQ F  T+  S    ++VKLV+LDEAD++T  +Q ALR 
Sbjct:   39 ATPWVEKYRPQSLADVAAHRDIVDTIDRLTSENKLPHLLLYGPPGTGKTSTILAVARKLYG-TQMHNMVLELNASDERGIDVVRQQIQDFASTQSFSFGPKSSVKLVLLDEADAMTKDAQFALRR 162          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig87007.16839.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q8QN66_ESV1K9.250e-4158.40EsV-1-224 n=2 Tax=root TaxID=1 RepID=Q8QN66_ESV1K[more]
A0A6H5KU33_9PHAE4.080e-3858.40MEP9 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A5D3CEZ2_CUCME6.300e-3351.20Replication factor C subunit 5 n=1 Tax=Cucumis mel... [more]
A0A2V0P166_9CHLO1.480e-3254.47Replication factor C subunit 5 n=1 Tax=Raphidoceli... [more]
A0A1V2L724_CYBFA1.480e-3248.84Replication factor C subunit 3 n=2 Tax=Cyberlindne... [more]
A0A376B591_9ASCO1.700e-3245.38Probable Replication factor C subunit 3 n=1 Tax=Sa... [more]
UPI00062659082.860e-3249.21replication factor C subunit 5 isoform X1 n=2 Tax=... [more]
A0A5J4XVJ0_9CHLO3.690e-3250.39Replication factor C subunit 5-like n=1 Tax=Trebou... [more]
A0A835DJA5_9MAGN4.220e-3251.20AAA domain-containing protein n=1 Tax=Tetracentron... [more]
A0A834LAP3_RHOSS4.600e-3252.80AAA domain-containing protein n=3 Tax=Ericales Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.300coord: 2..130
e-value: 4.9E-29
score: 103.3
NoneNo IPR availablePANTHERPTHR11669REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNITcoord: 4..129
NoneNo IPR availablePANTHERPTHR11669:SF9REPLICATION FACTOR C SUBUNIT 5coord: 4..129
IPR003959ATPase, AAA-type, corePFAMPF00004AAAcoord: 44..121
e-value: 3.9E-10
score: 40.3
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 8..128

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig87007contigS-dermatodea_contig87007:2..391 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig87007.16839.1mRNA_S-dermatodea_contig87007.16839.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig87007 2..391 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig87007.16839.1 ID=prot_S-dermatodea_contig87007.16839.1|Name=mRNA_S-dermatodea_contig87007.16839.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=130bp
TRHTHTAVPWVERYRPSRLVDVGGNAHVIDALRSYSSIDDMPHLLLHGPP
GSGKTSAILAIARQFYGGTVLSSMVLELNASDVRGVHTMRNQIQPFTKCL
SVTDATAVKLVVLDEADSLTNLSQCALRHL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003959ATPase_AAA_core
IPR027417P-loop_NTPase