mRNA_S-dermatodea_contig8691.16834.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig8691.16834.1 vs. uniprot
Match: B7ZGM7_9PHAE (60S ribosomal protein L36 (Fragment) n=3 Tax=Phaeophyceae TaxID=2870 RepID=B7ZGM7_9PHAE) HSP 1 Score: 163 bits (412), Expect = 3.230e-50 Identity = 90/102 (88.24%), Postives = 96/102 (94.12%), Query Frame = 1
Query: 1 MAPAPQQATGGA-EKRARKAKPSHQKGRLGKRVKMVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKYAKRRLGTHKRALAKREDIKEVYSKMRARQAM 303
MAP P+Q G + +KRA+KA+PSH KGRLGKRVKMVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYK+AKRRLGTHKRALAKREDIKEVYSKMRARQAM
Sbjct: 8 MAPVPKQIAGSSTQKRAQKARPSHHKGRLGKRVKMVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRLGTHKRALAKREDIKEVYSKMRARQAM 109
BLAST of mRNA_S-dermatodea_contig8691.16834.1 vs. uniprot
Match: A0A6V1KD91_HETAK (60S ribosomal protein L36 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1KD91_HETAK) HSP 1 Score: 130 bits (328), Expect = 1.850e-37 Identity = 64/89 (71.91%), Postives = 80/89 (89.89%), Query Frame = 1
Query: 37 EKRARKAKPSHQKGRLGKRVKMVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKYAKRRLGTHKRALAKREDIKEVYSKMRARQAM 303
EKR +K +P H+KG+ GKRV +VREV+REV+GLMPYE+R+LDM+KTGG +EKRIYK+AKRRLGTHKRALAKRE++K +Y K+RARQAM
Sbjct: 18 EKREKKTRPKHRKGKKGKRVAVVREVIREVSGLMPYERRMLDMVKTGGVGSEKRIYKFAKRRLGTHKRALAKREEVKGIYGKIRARQAM 106
BLAST of mRNA_S-dermatodea_contig8691.16834.1 vs. uniprot
Match: F0YH51_AURAN (60S ribosomal protein L36 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YH51_AURAN) HSP 1 Score: 129 bits (324), Expect = 5.590e-37 Identity = 66/89 (74.16%), Postives = 80/89 (89.89%), Query Frame = 1
Query: 37 EKRARKAKPSHQKGRLGKRVKMVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKYAKRRLGTHKRALAKREDIKEVYSKMRARQAM 303
EK A+ +P H+KGRL R K+VREVVREVAGL+PYEKRILDMIKTGGAS+EKR+YK+AK RLGTHKRA+ KRED+K++Y++MRARQAM
Sbjct: 7 EKLAKAQRPKHRKGRLSARTKVVREVVREVAGLVPYEKRILDMIKTGGASSEKRMYKFAKMRLGTHKRAIKKREDMKDIYAQMRARQAM 95
BLAST of mRNA_S-dermatodea_contig8691.16834.1 vs. uniprot
Match: A0A835YST3_9STRA (60S ribosomal protein L36 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YST3_9STRA) HSP 1 Score: 127 bits (320), Expect = 2.720e-36 Identity = 66/83 (79.52%), Postives = 77/83 (92.77%), Query Frame = 1
Query: 49 RKAKPSHQKGRLGKRVKMVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKYAKRRLGTHKRALAKREDIKEVYSKMRARQ 297
+K KPS +KGRLGKRV +VR+VVREVAGLMPYEKRILDMIK GGASAEKR+YK+AK+RLGTHKRALAKR+DIK++Y+K RA Q
Sbjct: 18 KKPKPSARKGRLGKRVSVVRQVVREVAGLMPYEKRILDMIKVGGASAEKRMYKFAKKRLGTHKRALAKRDDIKDMYAKQRAHQ 100
BLAST of mRNA_S-dermatodea_contig8691.16834.1 vs. uniprot
Match: B8BZT3_THAPS (60S ribosomal protein L36 n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZT3_THAPS) HSP 1 Score: 125 bits (314), Expect = 2.440e-35 Identity = 66/88 (75.00%), Postives = 77/88 (87.50%), Query Frame = 1
Query: 37 EKRARKAKPSHQKGRLGKRVKMVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKYAKRRLGTHKRALAKREDIKEVYSKMRARQA 300
E++ R A+PS KGRLGKR + RE+ REVAGL PYE+RILDMIKTGG+SA+KRIYK+AKRRLG+HKRALAKREDIK V SKMRA+QA
Sbjct: 17 EQKERAARPSQSKGRLGKRTALCREIAREVAGLSPYERRILDMIKTGGSSADKRIYKFAKRRLGSHKRALAKREDIKAVNSKMRAKQA 104
BLAST of mRNA_S-dermatodea_contig8691.16834.1 vs. uniprot
Match: A0A7R9WHM3_9STRA (60S ribosomal protein L36 n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WHM3_9STRA) HSP 1 Score: 124 bits (311), Expect = 8.090e-35 Identity = 65/88 (73.86%), Postives = 76/88 (86.36%), Query Frame = 1
Query: 37 EKRARKAKPSHQKGRLGKRVKMVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKYAKRRLGTHKRALAKREDIKEVYSKMRARQA 300
EK AR AKPSH+KG+ GKR M RE+ REV GL PYE+RILDMIKTGG++A+KRIYK+AK+RLG+HKRALAKREDIKEV + RARQA
Sbjct: 22 EKLARSAKPSHKKGKKGKRTAMCREIAREVCGLSPYERRILDMIKTGGSAADKRIYKFAKKRLGSHKRALAKREDIKEVNAAQRARQA 109
BLAST of mRNA_S-dermatodea_contig8691.16834.1 vs. uniprot
Match: K0T5I4_THAOC (60S ribosomal protein L36 n=2 Tax=Thalassiosirales TaxID=33847 RepID=K0T5I4_THAOC) HSP 1 Score: 123 bits (309), Expect = 1.410e-34 Identity = 64/88 (72.73%), Postives = 77/88 (87.50%), Query Frame = 1
Query: 37 EKRARKAKPSHQKGRLGKRVKMVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKYAKRRLGTHKRALAKREDIKEVYSKMRARQA 300
E+R R AKPS KG+LGKR + RE+ REVAGL PYE+RILDMIKTGG++A+KRIYK+AKRRLG+HKRA+AKREDIK + SKMRA+QA
Sbjct: 17 EQRERAAKPSRTKGKLGKRTALCREIAREVAGLSPYERRILDMIKTGGSAADKRIYKFAKRRLGSHKRAVAKREDIKAINSKMRAKQA 104
BLAST of mRNA_S-dermatodea_contig8691.16834.1 vs. uniprot
Match: A0A7S2ICR1_9STRA (60S ribosomal protein L36 n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2ICR1_9STRA) HSP 1 Score: 122 bits (305), Expect = 5.710e-34 Identity = 63/86 (73.26%), Postives = 77/86 (89.53%), Query Frame = 1
Query: 43 RARKAKPSHQKGRLGKRVKMVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKYAKRRLGTHKRALAKREDIKEVYSKMRARQA 300
R R AKPS++KG LGKRV + RE+ REVAGL PYE+RILDMIKTGG++A+KRIYK+AK+RLG+HKRALAKREDIKEV ++ RA+QA
Sbjct: 19 RERAAKPSYRKGALGKRVSLCREIAREVAGLSPYERRILDMIKTGGSAADKRIYKFAKKRLGSHKRALAKREDIKEVNAQQRAKQA 104
BLAST of mRNA_S-dermatodea_contig8691.16834.1 vs. uniprot
Match: A0A7S1ZCQ6_9STRA (60S ribosomal protein L36 n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZCQ6_9STRA) HSP 1 Score: 120 bits (302), Expect = 6.130e-33 Identity = 63/86 (73.26%), Postives = 75/86 (87.21%), Query Frame = 1
Query: 43 RARKAKPSHQKGRLGKRVKMVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKYAKRRLGTHKRALAKREDIKEVYSKMRARQA 300
R R AKPS +KG LGKRV + R + REVAGL PYE+RILDMIKTGG++A+KRIYKYAK+RLG+HKRALAKREDIKEV ++ RA+QA
Sbjct: 64 RERAAKPSQRKGALGKRVSLCRSIAREVAGLSPYERRILDMIKTGGSAADKRIYKYAKKRLGSHKRALAKREDIKEVNAQQRAKQA 149
BLAST of mRNA_S-dermatodea_contig8691.16834.1 vs. uniprot
Match: K8YZ07_NANGC (60S ribosomal protein L36 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YZ07_NANGC) HSP 1 Score: 118 bits (296), Expect = 1.340e-32 Identity = 60/81 (74.07%), Postives = 74/81 (91.36%), Query Frame = 1
Query: 58 KPSHQKGRLGKRVKMVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKYAKRRLGTHKRALAKREDIKEVYSKMRARQA 300
+P+ +KG L K+VK+VREVVR+V GLMPYEKRILD+IKTGG+ AEK++YK+AKRRLGTH+RAL KRE+IKE YSK+RARQA
Sbjct: 24 RPAGRKGTLVKKVKLVREVVRDVVGLMPYEKRILDVIKTGGSGAEKKVYKFAKRRLGTHRRALKKREEIKEYYSKLRARQA 104 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8691.16834.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig8691.16834.1 >prot_S-dermatodea_contig8691.16834.1 ID=prot_S-dermatodea_contig8691.16834.1|Name=mRNA_S-dermatodea_contig8691.16834.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=103bp MAPAPQQATGGAEKRARKAKPSHQKGRLGKRVKMVREVVREVAGLMPYEKback to top mRNA from alignment at S-dermatodea_contig8691:1866..8102+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig8691.16834.1 ID=mRNA_S-dermatodea_contig8691.16834.1|Name=mRNA_S-dermatodea_contig8691.16834.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=6237bp|location=Sequence derived from alignment at S-dermatodea_contig8691:1866..8102+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig8691:1866..8102+ >mRNA_S-dermatodea_contig8691.16834.1 ID=mRNA_S-dermatodea_contig8691.16834.1|Name=mRNA_S-dermatodea_contig8691.16834.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at S-dermatodea_contig8691:1866..8102+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |