mRNA_S-dermatodea_contig8686.16830.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8686.16830.1
Unique NamemRNA_S-dermatodea_contig8686.16830.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8686.16830.1 vs. uniprot
Match: A0A6H5L4E4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4E4_9PHAE)

HSP 1 Score: 199 bits (507), Expect = 1.960e-59
Identity = 91/127 (71.65%), Postives = 106/127 (83.46%), Query Frame = 1 
Query:    4 AATHETGPWADVVPRRLSEFFSRRCPLEDENEGLVTLFLDKSAEHICWCPPGAVELVPDDRYRVNVRRLVEVVPGDQPHPRFLSLRASGRPNPLVIELDSDELYDTVSKGIVRILERNHVRDTLMTD 384
            + +  T  W DVVP+R+ EF SR CPLEDENEGLVTLFLDK  E++CWCPPGA ELVPD+RY ++VR LVEVVPGD  HPR LSLR++GR NPLV ELDSD+LYD +S+GIVRILERNH+RDTLM D
Sbjct:  326 STSESTQQWVDVVPKRIKEFLSRTCPLEDENEGLVTLFLDKERENLCWCPPGAAELVPDERYSLSVRSLVEVVPGDSVHPRVLSLRSTGRANPLVFELDSDDLYDILSEGIVRILERNHLRDTLMVD 452
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BLAST of mRNA_S-dermatodea_contig8686.16830.1 vs. uniprot
Match: D8LGU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGU4_ECTSI)

HSP 1 Score: 199 bits (505), Expect = 2.510e-59
Identity = 91/122 (74.59%), Postives = 104/122 (85.25%), Query Frame = 1 
Query:   19 TGPWADVVPRRLSEFFSRRCPLEDENEGLVTLFLDKSAEHICWCPPGAVELVPDDRYRVNVRRLVEVVPGDQPHPRFLSLRASGRPNPLVIELDSDELYDTVSKGIVRILERNHVRDTLMTD 384
            T  W DVVP+R+ EF SR CPLEDENEGLVTLFLDK  E++CWCPPGA ELVPD+RY ++VR LVEVVPGD  HPR LSLR++GR NPLV ELDSD+LYD +S+GIVRILERNH+RDTLM D
Sbjct:  312 TQQWVDVVPKRIKEFLSRSCPLEDENEGLVTLFLDKERENLCWCPPGAAELVPDERYSLSVRSLVEVVPGDSVHPRVLSLRSAGRANPLVFELDSDDLYDILSQGIVRILERNHLRDTLMVD 433
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8686.16830.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L4E4_9PHAE1.960e-5971.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGU4_ECTSI2.510e-5974.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8686contigS-dermatodea_contig8686:760..4592 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-28_001220.1
Hectar predicted targeting categoryother localisation
Exons4
Model size463
Cds size408
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8686.16830.1prot_S-dermatodea_contig8686.16830.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8686 760..4537 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925359.2844572-CDS-S-dermatodea_contig8686:759..8591622925359.2844572-CDS-S-dermatodea_contig8686:759..859Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8686 760..859 +
1694079879.9543707-CDS-S-dermatodea_contig8686:759..8591694079879.9543707-CDS-S-dermatodea_contig8686:759..859Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8686 760..859 +
1622925359.297391-CDS-S-dermatodea_contig8686:1973..20891622925359.297391-CDS-S-dermatodea_contig8686:1973..2089Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8686 1974..2089 +
1694079879.965873-CDS-S-dermatodea_contig8686:1973..20891694079879.965873-CDS-S-dermatodea_contig8686:1973..2089Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8686 1974..2089 +
1622925359.3099997-CDS-S-dermatodea_contig8686:3650..37641622925359.3099997-CDS-S-dermatodea_contig8686:3650..3764Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8686 3651..3764 +
1694079879.9742575-CDS-S-dermatodea_contig8686:3650..37641694079879.9742575-CDS-S-dermatodea_contig8686:3650..3764Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8686 3651..3764 +
1622925359.3236277-CDS-S-dermatodea_contig8686:4459..45371622925359.3236277-CDS-S-dermatodea_contig8686:4459..4537Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8686 4460..4537 +
1694079879.9826937-CDS-S-dermatodea_contig8686:4459..45371694079879.9826937-CDS-S-dermatodea_contig8686:4459..4537Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8686 4460..4537 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925359.3367195-UTR-S-dermatodea_contig8686:4537..45921622925359.3367195-UTR-S-dermatodea_contig8686:4537..4592Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8686 4538..4592 +
1694079879.9928625-UTR-S-dermatodea_contig8686:4537..45921694079879.9928625-UTR-S-dermatodea_contig8686:4537..4592Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8686 4538..4592 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8686.16830.1

>prot_S-dermatodea_contig8686.16830.1 ID=prot_S-dermatodea_contig8686.16830.1|Name=mRNA_S-dermatodea_contig8686.16830.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=136bp
MAATHETGPWADVVPRRLSEFFSRRCPLEDENEGLVTLFLDKSAEHICWC
PPGAVELVPDDRYRVNVRRLVEVVPGDQPHPRFLSLRASGRPNPLVIELD
SDELYDTVSKGIVRILERNHVRDTLMTDSPIPDAV*
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mRNA from alignment at S-dermatodea_contig8686:760..4592+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8686.16830.1 ID=mRNA_S-dermatodea_contig8686.16830.1|Name=mRNA_S-dermatodea_contig8686.16830.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3833bp|location=Sequence derived from alignment at S-dermatodea_contig8686:760..4592+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCAGCTACTCACGAGACGGGTCCGTGGGCGGACGTGGTCCCGAGACG
CCTTTCCGAGTTCTTCTCCCGGAGGTGCCCTCTCGAAGACGAAAACGAAG
GTGCGGTGTGGTGTCATGATGATTTTTTTAATTTCGGCTGATGGGGTCGA
TTTTACACACAAGACAGTTATTACTAATTATAGTAATTCCCGAGGTAGAC
AGTAACTAGGACCAAGCTTACTGCTATCTTCATTGATTAATACCGCTTTG
AACGTGTTTTCCACACTATTTCCTATACGAATTTTGAGGCCGATTTGTAC
GCTAAACTCCTATACGATTTTGAGTGATTTCAAAGAACTTGATGTTTGTG
TTGAGCGCCAAACAACTTGATTTTAGAGTTGAGCGACCACGCACACCTCA
CGGGCTAGCGTACCAGCCGTCGCTACCTACTGCAAGCAGTACAGTAGTTT
CTGCTGAATTAGCGTACTTGTGGTGAAGTCTTTTTTTTTTTAACGCTGAC
CCGACCACCTTGAAATGGTTTTCTTTTCTTTGCACAAGAGTTGGAGTCCC
ATATTTTTGGTAGAGGAGAAAGATGGCTAACTCAGTGGAAGCCTACGTTG
TATACGATGCTACGTTATTGTATGATATTAATGTTAACCCTTATTGTGAC
TAAGGCTGTTTTTGGGTAACTGGTTGCTATTATTAGGGTAGCCAGCATTT
ACCCGAAAACAGGCTTTGTCCCCGGCTTAGTCCCAAAAGGGTAAATAGTA
TTTACCCTAACAGTTTTAGTCCCAAAAGGGTTAAGAACCTGTCTACAGGT
GTGTACTAGTTACTACAATACAATTATAAGTGTAACTCTGGGAATGGGGT
ACCCCCCCCCCCTTTATTAGTGGCGGACCGCACGTTTTATAAAAAGGAGA
GAGAGCTGTACATGGCTGAGCTAGGAAAATTGAAGGCTACGACAGAGAGA
CTTTTGAAGCATGGGGCAGCCAGGCGAAGGCGGTAGCTATACTGGGGGAT
AAGAAGTAGCCTGAGAAGGCGAGAAGGGATGTAGACCGGATAGGAAAAAC
ATTTTTGCGCCACCTTTGGCAAAGTAGGAAGGAACGATTGGAAATCGGCG
ATCGATCGACCTATGGGAGCAAATGTTTCGATTGGTCAATCCATCAATCA
ATCAATCAATCAATCACCCAGCGCTGCCAACGCTCCCACCCCCGCCCCCC
CTGTTCGTTTTCAGGCCTGGTAACCCTGTTCCTCGACAAGAGCGCCGAGC
ATATATGCTGGTGTCCTCCCGGGGCTGTGGAGCTGGTACCGGATGATCGA
TACCGTGTCAACGTCCGCCGTCTCGTCGAGGTGATTATCATGATGATTTT
GATTTTGGTTGTGCGTCTTCCATGGCGATGAGGACGATGATCGATTGCCG
ATACTGTGTAGCCCTATTCGTGTACAAGTACAACGAGCCATTACGGAGGT
ACCCAGTATTCGGTATAATAGTACCAGGTAATCGGTATAACAGTAATCAG
TTATAACAGTAATCGGTATAACAGTACAACGAGCCATTACGGAGGTACCC
AGTAATCGGTATAATAGTACCAGGTAATCAGTATAGTAGTAATCAGTATA
GTGTAATCAGTTATAACAGTAATCAATATAATTGTCATCAGTGTAACAGT
TTTCAGTGTAACAGTAATCAGTATAACAGTAATCGGTATAACAGTAATGA
GGACCAAATATTTCATTAGTTAATAACCGCCCTGACCGATCTTTAATAGC
GAATTTTTGGAGAACGATATTGTGTCACCGGAAACCTATAGGAAAAGTGA
TGCCAAACAACTTGATGTTTGTGTTGAGCGCCAAGTGTTGAAAGAGTAGG
ATTGTTCACCTCACGGGCGTAGCCTAGCCGTGGCTATTAATACCTACTAG
TTTATTTGGTCCGCAACACCTTGTTGGCACACATATGATAGATTTGCTTT
TCCGAGGTCCGTCTGTTGTCACAAGGGATTGATCATCCCATCTCTCTTAT
CTTATCCCCGGTTTTCACCTTTGATTTTTATCGCGAATGCATTGGGTTCG
GCACTCCCACAGCTCTATAGCCGATTTCTTGATTTTTTTTGCGAATACTA
TAACTACCAGTACTCTTGTCTTTTTTCGGTTCGGCACTGTCAGATTCTAA
ATTGTCACAATCGGCACTGGTTGGGAACTGTGAGAGTCTTGACTTTTCTA
ATCGGCAGATGGCCTAAACCCGAAAACGATCTCGTTTCCGAAAGGGTTAA
ACCCGGGAAATTTCACATGCCCGGCACGTGCACATGTATTTTCGCAGCAC
CAGTGCCGGAACCGGTTTTCGGTACTGTACGGCACTGTAATATTCTAAAT
TATATAAACCGGCACTGGTTCGGAACTGTGAGAGTCTCGACTTTTCTAAT
CGGCAGATGGCCTAAGCCCGAAAACGAACTCAGTTCCGAAAGGGTGAACT
AAACCCGGGGACGTACACATGCCCGGTACTTTCATATGTATTTTCACAGT
ACCGGTGCCATAACCAGCTTTCGGTTACATGACATGACCGGCACTGTCAG
ATTCTAAATTATAAAAACCGGCACTGGTTCGGAACTGTGAGAGTCTTGAC
TTTTCTAATAGGCTGATGGCCTAAACCCGAAAACGAACTCAGTTCCGAAA
GGGTGAACTAAACCCGGGGACTTACACACGACCGGTACTTTCACATGTAT
TTTCACAGTACCGGTGCCATAACCAGCTTTCGGTTACATGACATGACCGG
CACTGTCAGATTCTATATTTTCAAGACCGGCACTGGTTCGGAACTGTCAG
ATGGCCTAAACCCGAAAACGAAGTCACTTCCGAACTGGCGCCAAACACCC
ACCTAGCCAACCAATCGCTTGTTTTTTTTTCCCTTTCGCAGGTCGTGCCT
GGAGACCAGCCTCACCCACGTTTCCTCTCGCTGCGAGCATCGGGCCGACC
AAACCCCCTCGTGATCGAGCTCGACTCTGACGAGCTCTACGACACCGTAT
CCAAGGTGAGGGCGGGACGCGCGCGCACTGATGCACTTGCTGGTTGAATT
TATAAATTGATTTGCGTAAGTATAGCCGACTATTAAATTAGTATTAATAC
TTTATAGGGCTCTCCGAAGCGACCAAAAACTCTCTCGATGCCAGTCGACA
GCTACAGAGTTCCCCAGGGCCCCGCTTCAAGCACGCCTCATTACGTGCTA
ACAGGCGTTCCAAACAGGGGGCTAGTACCAAAAGATCCGAGACTCGACTT
GTCGTCGGATCCTTTCGCAAAGAGTCAAAAGGAAAATAAACAAATAAATA
AAATAATAAACGCCTGTACCTTGTGCATATACTTCAAGTATAGCTCTACA
AGCAGTACCGACCGCGGTACTTGCACAACCTTCCGGACTATATTCAACAG
TGTGTTGTACGTACATGGAAGAAAAAAAAAGGCCTTGACAAGTATGTTTG
ATCAAAGACGCGCAGGGCTTGCTATATACGGAGGGCTACCGGCTGCACAA
AAATGCAATTTGCGTTCCTCCTGTTTCTTAATGTATGTCATTATATTATA
TAGCTCGCATGAATGGAAAGTTTGATTGATTTACTCTGTTTCTTTTGTAT
CGATATATCACACATGCCGCCGATCGGCCTCTCCACCCGATACCCCGCTC
TGCATGACTTCGACCTCGTTTTTTTGCTTCTCCTTTCTTTCCATTTCCAG
GGAATCGTTCGGATTCTGGAGCGGAATCACGTCCGCGATACGCTCATGAC
CGACTCCCCCATACCCGACGCGGTATGAGCACCCCACGCCAACCCATCCA
TAAATAACGCCACTGGTGTCATGGAAACCCTCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig8686:760..4592+

>mRNA_S-dermatodea_contig8686.16830.1 ID=mRNA_S-dermatodea_contig8686.16830.1|Name=mRNA_S-dermatodea_contig8686.16830.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=816bp|location=Sequence derived from alignment at S-dermatodea_contig8686:760..4592+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCAGCTACTCACGAGACGGGTCCGTGGGCGGACGTGGTCCCGAGACG
CCTTTCCGAGTTCTTCTCCCGGAGGTGCCCTCTCGAAGACGAAAACGAAG
ATGGCAGCTACTCACGAGACGGGTCCGTGGGCGGACGTGGTCCCGAGACG
CCTTTCCGAGTTCTTCTCCCGGAGGTGCCCTCTCGAAGACGAAAACGAAG
GCCTGGTAACCCTGTTCCTCGACAAGAGCGCCGAGCATATATGCTGGTGT
CCTCCCGGGGCTGTGGAGCTGGTACCGGATGATCGATACCGTGTCAACGT
CCGCCGTCTCGTCGAGGCCTGGTAACCCTGTTCCTCGACAAGAGCGCCGA
GCATATATGCTGGTGTCCTCCCGGGGCTGTGGAGCTGGTACCGGATGATC
GATACCGTGTCAACGTCCGCCGTCTCGTCGAGGTCGTGCCTGGAGACCAG
CCTCACCCACGTTTCCTCTCGCTGCGAGCATCGGGCCGACCAAACCCCCT
CGTGATCGAGCTCGACTCTGACGAGCTCTACGACACCGTATCCAAGGTCG
TGCCTGGAGACCAGCCTCACCCACGTTTCCTCTCGCTGCGAGCATCGGGC
CGACCAAACCCCCTCGTGATCGAGCTCGACTCTGACGAGCTCTACGACAC
CGTATCCAAGGGAATCGTTCGGATTCTGGAGCGGAATCACGTCCGCGATA
CGCTCATGACCGACTCCCCCATACCCGACGCGGTATGAGGAATCGTTCGG
ATTCTGGAGCGGAATCACGTCCGCGATACGCTCATGACCGACTCCCCCAT
ACCCGACGCGGTATGA
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