mRNA_S-dermatodea_contig8681.16829.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8681.16829.1
Unique NamemRNA_S-dermatodea_contig8681.16829.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8681.16829.1 vs. uniprot
Match: D8LJT3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJT3_ECTSI)

HSP 1 Score: 333 bits (855), Expect = 2.870e-109
Identity = 184/241 (76.35%), Postives = 203/241 (84.23%), Query Frame = 1 
Query:    1 SDTSSSFHAFLSRQNKMEINKVKTIEAIQASHDGSDMTQHSFRPEICAESVKIHLESNKGDFLQRVARDAARKEHEAMRQQAAGKHDPDCTFKPQITARSANLQPRSVVELSRGDQLKRETTQRLTKLRAEQQELLAGTTFRPRINDDPASQMAVSRLKVVSDPDGYIATVEEIRRRKQESAVRGAMERAVKEVAGCTFRPQTTACPAYIKRIAQSISTSKA-----GAKKQTR-VKPDWR 705
            SDTSSSFHAFLSRQNK+E +K+K I+ IQ       M QH+F+PEICAES KIH ESNKGDFLQRVARDAARKEHEA+RQ+AAG HDPDCTFKPQITARSA LQ RSVVELSRGDQLKRETTQRL++LRAEQ ELLA TTFRPRIN D AS+MAVS+LKVVSDPD YIATVE +RRRK+ES V+GA+ERA KEV GCTF+P+TT CPAYI RIAQSI  SKA     G KKQ +  KPDWR
Sbjct:  284 SDTSSSFHAFLSRQNKLETDKLKHIDQIQV------MRQHTFQPEICAESTKIHKESNKGDFLQRVARDAARKEHEAVRQKAAGLHDPDCTFKPQITARSATLQARSVVELSRGDQLKRETTQRLSRLRAEQ-ELLADTTFRPRINADAASRMAVSKLKVVSDPDNYIATVETLRRRKEESVVKGAIERAAKEVEGCTFKPETTECPAYITRIAQSICASKALPGPGGGKKQVKNAKPDWR 517
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BLAST of mRNA_S-dermatodea_contig8681.16829.1 vs. uniprot
Match: A0A835ZG99_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG99_9STRA)

HSP 1 Score: 157 bits (397), Expect = 4.630e-40
Identity = 93/203 (45.81%), Postives = 127/203 (62.56%), Query Frame = 1 
Query:  169 SNKGDFLQRVARDAARKEHEAMRQ-------------------QAAGKHDPDCTFKPQITARSANLQPRSVVELSRGDQLKRETTQRLTKLRAEQQELLAGTTFRPRINDDPASQMAVSRLKVVSDPDGYIATVEEIRRRKQESAVRGAMERAVKEVAGCTFRPQTTACPAYIKRIAQSISTSKAGA-----KKQTRVKPDWR 705
            + +G FLQR+ARDA RKEHE +R                    QAA     +CTF PQITARS     RSV+E+SRGDQL+RET  RL++LR E+++L    TF P++ND PAS+   S L+VVSDP+ YIA V+  +RR+ E  +   + RA  E A CTF+PQT  CPAY++RIA S++ ++A A     + ++  +PDWR
Sbjct:  834 TTRGSFLQRLARDALRKEHEFLRLKNSHLQCLTRTRCRCRALLQAARDDRANCTFAPQITARSRRRSGRSVLEMSRGDQLRRETNVRLSRLRMEREQL-GDVTFEPQLNDGPASRGVKSHLQVVSDPESYIARVQARQRRRDERTLNARVARAAAEAADCTFQPQTAECPAYVRRIAASMAEARAAAAAEAARPRSPPRPDWR 1035
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BLAST of mRNA_S-dermatodea_contig8681.16829.1 vs. uniprot
Match: A0A067CKV0_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CKV0_SAPPC)

HSP 1 Score: 152 bits (385), Expect = 4.240e-39
Identity = 92/232 (39.66%), Postives = 136/232 (58.62%), Query Frame = 1 
Query:   19 FHAFLSRQNKMEINKVKTIEAIQASHDGSDMTQHSFRPEICAESVKIHLESNKGDFLQRVARDAARKEHEAMRQQAAGKHDPDCTFKPQITARSANLQPRSVVELSRGDQLKRETTQRLTKLRAEQQELLAGTTFRPRINDDPASQMAVSRLKVVSDPDGYIATVEEIRRRKQESAVRGAMERAVKEVAGCTFRPQTTACPAYIKRIAQSISTSKAGAKKQTR---VKPDWR 705
            F AF+ RQ   +  +   +E+ +        T+  F+PEI  +SV+I  +  KGDF++RVA+ A RKEHE +++++    DP CTF PQI   S     RSV ELSRGD LKRET+QRL KL+ EQ E+ A  TFRP++ND         +LKV+S P+ Y+  ++E   +  E   +   ++ ++E   CTF+P+T   P YI RIA+S+  +KA   K  +    +PDW+
Sbjct:  375 FEAFVHRQEAKQRERHAKLESAR------QRTEFDFKPEINKKSVEIMQQGRKGDFIERVAKYALRKEHEKLKKKSIKLQDPQCTFHPQINEASTKRAGRSVTELSRGDLLKRETSQRLMKLKMEQGEM-AQLTFRPQVNDHRGE----GKLKVLSSPETYVQRLQEQTLKLYEKQRKALQQQEIQEFRECTFKPRTKEVPGYISRIAKSMEIAKAMQNKNAKPRVARPDWK 595
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BLAST of mRNA_S-dermatodea_contig8681.16829.1 vs. uniprot
Match: A0A7S1GBP8_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GBP8_9STRA)

HSP 1 Score: 145 bits (366), Expect = 7.680e-39
Identity = 98/236 (41.53%), Postives = 138/236 (58.47%), Query Frame = 1 
Query:    7 TSSSFHAFLSRQNKMEINKVKTIEAIQASHDGSDMTQHSFRPEICAESVKIHLESNKGD-FLQRVARDAARKEHEAMRQQAAGKHDPDCTFKPQITARSANLQPRSVVELSRGDQLKRETTQRLTKLRAEQQELLAGTTFRPRINDDPASQMAVS-RLKVVSDPDGYIATVEEIRRRKQESAVRGAMERAVKEVAGCTFRPQTTACPAYIKRIAQSISTSKAGAKKQTR-VKPDWR 705
            T + F +FL RQN  +  K + ++ I+ S D  D T   F P++   S+++  E N GD FL R+A    RKEHEA+RQ+A   HDP       I  +SA   PRS VE+SRGD LKRET QRL +L+AEQ EL +G TF+P  N        V  RL+++ DPDGY+  V++ ++   +   R   E  +KE + CTF+PQ    PAY+KRIA+S + ++A     +   +PDWR
Sbjct:   42 TPAEFQSFLERQNMRQQKKEEHLDEIKKSMD-RDCT---FEPKLDRHSLQM-AEKNVGDKFLHRLAAHMLRKEHEAVRQKARVAHDPXXXXXXXILKKSAKRVPRSAVEMSRGDALKRETAQRLMRLQAEQAEL-SGLTFQPETNTTKRKWEGVDGRLRILEDPDGYLERVQKEQKAFSDRQRRAMQEAEMKEFSECTFKPQVHDAPAYVKRIARSWALTRAANPDASEDARPDWR 271
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BLAST of mRNA_S-dermatodea_contig8681.16829.1 vs. uniprot
Match: A0A6G0X076_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X076_9STRA)

HSP 1 Score: 151 bits (382), Expect = 7.880e-39
Identity = 94/230 (40.87%), Postives = 139/230 (60.43%), Query Frame = 1 
Query:   19 FHAFLSRQNKMEINKVKTIEAIQASHDGSDMTQHSFRPEICAESVKIHLESNKGDFLQRVARDAARKEHEAMRQQAAGKHDPDCTFKPQITARSANLQPRSVVELSRGDQLKRETTQRLTKLRAEQQELLAGTTFRPRINDDPASQMAVSRLKVVSDPDGYIATVEEIRRRKQESAVRGAMERAVKEVAGCTFRPQTTACPAYIKRIAQSISTSKAGAKK-QTRVKPDWR 705
            F  F+ RQ   E  + + +E  + +         +F+P I  +S +I  +  KGDF++RVA+ A RKEHE +++++    DP CTFKP+I   SA   PRSV ELSRGD LKRET+QRL KLR EQ E+    TF+P +N   A     S+LKVVSDP+ Y+  ++E   +  E   +   E+ ++E + CTF+PQT   P+YI RIA+S+  +KA   + +T  +P+W+
Sbjct:  342 FQEFIRRQLAQEHERQRKLEEARKNR------ALAFKPNINKKSNEIMQQGRKGDFIERVAKYALRKEHEKLKKKSIKLMDPQCTFKPKINDVSAKRTPRSVTELSRGDLLKRETSQRLMKLRMEQHEMTQ-LTFKPAVN--LAIPHVESKLKVVSDPENYVQRLQEHTLKLYEKQRKALQEQEIQEFSECTFKPQTIQVPSYISRIAKSMELTKAHKPQPRTPSRPEWK 562
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BLAST of mRNA_S-dermatodea_contig8681.16829.1 vs. uniprot
Match: A0A225WIS9_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WIS9_9STRA)

HSP 1 Score: 152 bits (384), Expect = 9.120e-39
Identity = 93/239 (38.91%), Postives = 140/239 (58.58%), Query Frame = 1 
Query:    4 DTSSSFHAFLSRQNKMEINKVKTIEAIQASHDGSDMTQHSFRPEICAESVKIHLESNKGDFLQRVARDAARKEHEAMRQQAAGKHDPDCTFKPQITARSANLQPRSVVELSRGDQLKRETTQRLTKLRAEQQELLAGTTFRPRINDDPASQMAVSRLKVVSDPDGYIATVEEIRRRKQESAVRGAMERAVKEVAGCTFRPQTTACPAYIKRIAQSISTSKAGAKKQ-----TRVKPDWR 705
            + S  F  F+ RQ   E  + K IE  +       +T   ++P I  +S+ +     KGDFL+R++  A RKEH+ ++++     DP+CTFKP I   S   +PRS+ ELSRGD L+RETTQRL KL+ EQ+E+ A  TFRP++N    S+    RLK++S PD Y+  +++  +       R   E+ + E A CTF+P+T   PAY++RIA+S+S +KA   +Q      R KP+W+
Sbjct:  414 ERSRQFKNFIERQKFHEHARHKRIEMTK-----QQLTSGPYKPTINKKSLAMMENGRKGDFLERISSYALRKEHDNIKKKTVRSSDPNCTFKPTINQMSTRRKPRSITELSRGDLLRRETTQRLMKLKMEQEEM-ASLTFRPQLNR--VSERHEGRLKILSSPDTYLQRLQQQSQAHTVKQRRALQEKEIGEFAECTFKPRTIEAPAYVQRIARSVSLTKALRAQQQAAVRAREKPEWK 644
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BLAST of mRNA_S-dermatodea_contig8681.16829.1 vs. uniprot
Match: A0A1V9YND9_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YND9_9STRA)

HSP 1 Score: 151 bits (382), Expect = 1.150e-38
Identity = 94/231 (40.69%), Postives = 138/231 (59.74%), Query Frame = 1 
Query:   19 FHAFLSRQNKMEINKVKTIEAIQASHDGSDMTQHSFRPEICAESVKIHLESNKGDFLQRVARDAARKEHEAMRQQAAGKHDPDCTFKPQITARSANLQPRSVVELSRGDQLKRETTQRLTKLRAEQQELLAGTTFRPRINDDPASQMAVSRLKVVSDPDGYIATVEEIRRRKQESAVRGAMERAVKEVAGCTFRPQTTACPAYIKRIAQSISTSKA-GAKKQTRV-KPDWR 705
            + AF+ RQ      ++K  E     +      +  F+PEI  +SV+I  +  KGDF++RVA+ A RKEH+ +++++    DP CTFKPQI   SA    RSV ELSRGD LKRET QRL KLR EQ E+ A  TFRP++ND         +LKV+S P+ Y+  ++E   +  +   +   ++ ++E + CTF+P+T   P YI RIA+S+  SKA  AK + R  +P+W+
Sbjct:  378 YQAFVRRQ------EIKQREREAKLNMARQQAEFDFKPEINKKSVEIMQQGRKGDFIERVAKYALRKEHDKLKKKSIKLQDPQCTFKPQINEVSARRSARSVTELSRGDLLKRETAQRLMKLRMEQNEM-AHLTFRPQVNDTGGE----GKLKVLSSPETYVQRLQEQTLKLYDKQRKALQQQEIQEFSECTFKPRTKEVPGYIARIAKSMEISKAMQAKTKARPQRPEWK 597
[Close]
BLAST of mRNA_S-dermatodea_contig8681.16829.1 vs. uniprot
Match: A0A485K9X9_9STRA (Aste57867_3549 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K9X9_9STRA)

HSP 1 Score: 151 bits (381), Expect = 1.790e-38
Identity = 94/236 (39.83%), Postives = 140/236 (59.32%), Query Frame = 1 
Query:   19 FHAFLSRQNKMEINKVKTIEAIQASHDGSDMTQHSFRPEICAESVKIHLESNKGDFLQRVARDAARKEHEAMRQQAAGKHDPDCTFKPQITARSANLQPRSVVELSRGDQLKRETTQRLTKLRAEQQELLAGTTFRPRINDDPASQMAVSRLKVVSDPDGYIATVEEIRRRKQESAVRGAMERAVKEVAGCTFRPQTTACPAYIKRIAQSISTSKAGAKKQTR-------VKPDWR 705
            F  F+ RQ   E  + + ++   A   G+      F+PEI  +S +I  +  KGDF++RVA+ A RKEHE +++++    DP CTFKP+I   SA   PRSV ELSRGD LK+ETTQRL KLR EQ E+ +  TF+P +N      +  S+LKV+S+P+ Y+  ++E   +  E   +   E+ ++E + CTF+PQT   P+YI RIA+S+  +KA   K  +        KP+W+
Sbjct:  383 FDEFMQRQQAQERERQRKLD--DARRHGA----FEFKPEINKKSSEIMQQGRKGDFIERVAKYALRKEHEKLKKKSIKLQDPQCTFKPKINDVSAKRTPRSVTELSRGDLLKKETTQRLMKLRMEQTEM-SQLTFKPAVNSTNIPNVE-SKLKVLSNPETYVQRLQEQTLKLYEKQRKALQEQEIEEFSECTFKPQTIDVPSYISRIAKSMELTKAVKAKHEQQQMTRRHAKPEWK 610
[Close]
BLAST of mRNA_S-dermatodea_contig8681.16829.1 vs. uniprot
Match: A0A329RU87_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RU87_9STRA)

HSP 1 Score: 152 bits (384), Expect = 2.160e-38
Identity = 93/232 (40.09%), Postives = 140/232 (60.34%), Query Frame = 1 
Query:   37 RQNKMEINKVKTIEAIQASHDGSDMTQHS----FRPEICAESVKIHLESNKGDFLQRVARDAARKEHEAMRQQAAGKHDPDCTFKPQITARSANLQPRSVVELSRGDQLKRETTQRLTKLRAEQQELLAGTTFRPRINDDPASQMAVSRLKVVSDPDGYIATVEEIRRRKQESAVRGAMERAVKEVAGCTFRPQTTACPAYIKRIAQSISTSKA-----GAKKQTRVKPDWR 705
            RQ K  I + K  E  QA H   ++T+H     ++P I  +S+ +     KGDFL+R++  A RKEH+ ++++     DP+CTFKP I   S   +PRS+ ELSRGD L+RETTQRL KL+ EQ+E+ A  TFRP++N    S+    RLK++S PD Y+  +++  +       R   E+ + E A CTF+P+T   PAY++RIA+S+S +KA      A  + + KP+W+
Sbjct:  607 RQFKNFIERQKFHE--QARHKRIELTKHQLTPGYKPTINKKSLAMMENGRKGDFLERISSYALRKEHDNVKKKTVRSTDPNCTFKPAINQASTKRKPRSITELSRGDLLRRETTQRLMKLKMEQEEM-AALTFRPQLNR--VSERHEGRLKILSSPDTYLQRIQQQSQAHTIKQRRAIQEKEIGEFAECTFKPRTIEAPAYVQRIARSVSLTKALRAQQQAAARAKEKPEWK 833
[Close]
BLAST of mRNA_S-dermatodea_contig8681.16829.1 vs. uniprot
Match: W2PQF9_PHYPN (Uncharacterized protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2PQF9_PHYPN)

HSP 1 Score: 151 bits (381), Expect = 5.460e-38
Identity = 91/234 (38.89%), Postives = 137/234 (58.55%), Query Frame = 1 
Query:   19 FHAFLSRQNKMEINKVKTIEAIQASHDGSDMTQHSFRPEICAESVKIHLESNKGDFLQRVARDAARKEHEAMRQQAAGKHDPDCTFKPQITARSANLQPRSVVELSRGDQLKRETTQRLTKLRAEQQELLAGTTFRPRINDDPASQMAVSRLKVVSDPDGYIATVEEIRRRKQESAVRGAMERAVKEVAGCTFRPQTTACPAYIKRIAQSISTSKA-----GAKKQTRVKPDWR 705
            F  F+ RQ   E  + K IE  +            ++P I  +S+ +     KGDFL+R++  A RKEH+ ++++     DP+CTFKP I   S   +PRS+ ELSRGD L+RETTQRL KL+ EQ+E+ A  TFRP++N    S+    RLK++SDPD Y+  +++  +       R   E+ + E A CTF+P+T   PAY++RIA+S+S +KA      A  + + KP+W+
Sbjct:  607 FKNFIERQEFHEQARHKRIEQTK------QQLTPGYKPTINKKSLAMMENGRKGDFLERISSYALRKEHDNVKKKTVRSTDPNCTFKPAINQASTKRKPRSITELSRGDLLRRETTQRLMKLKMEQEEM-ASLTFRPQLNRK--SERYEGRLKILSDPDSYLQRIQQQSQAHTTKQRRAIQEKEIGEFAECTFKPRTIEAPAYVQRIARSVSLTKALRAQQQAAARAKEKPEWK 831
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8681.16829.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJT3_ECTSI2.870e-10976.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZG99_9STRA4.630e-4045.81Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A067CKV0_SAPPC4.240e-3939.66Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A7S1GBP8_9STRA7.680e-3941.53Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A6G0X076_9STRA7.880e-3940.87Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A225WIS9_9STRA9.120e-3938.91Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A1V9YND9_9STRA1.150e-3840.69Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A485K9X9_9STRA1.790e-3839.83Aste57867_3549 protein n=1 Tax=Aphanomyces stellat... [more]
A0A329RU87_9STRA2.160e-3840.09Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
W2PQF9_PHYPN5.460e-3838.89Uncharacterized protein n=9 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8681contigS-dermatodea_contig8681:2403..8954 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score312.4
Seed ortholog evalue1.7e-82
Seed eggNOG ortholog2880.D8LJT3
EggNOG OGs28PAY@1,2QVYA@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons6
Model size768
Cds size660
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8681.16829.1prot_S-dermatodea_contig8681.16829.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8681 2451..8894 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925359.1689568-UTR-S-dermatodea_contig8681:2402..24501622925359.1689568-UTR-S-dermatodea_contig8681:2402..2450Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8681 2403..2450 +
1694079879.8456514-UTR-S-dermatodea_contig8681:2402..24501694079879.8456514-UTR-S-dermatodea_contig8681:2402..2450Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8681 2403..2450 +
1622925359.2545123-UTR-S-dermatodea_contig8681:8894..89541622925359.2545123-UTR-S-dermatodea_contig8681:8894..8954Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8681 8895..8954 +
1694079879.9427438-UTR-S-dermatodea_contig8681:8894..89541694079879.9427438-UTR-S-dermatodea_contig8681:8894..8954Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8681 8895..8954 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925359.1909652-CDS-S-dermatodea_contig8681:2450..25101622925359.1909652-CDS-S-dermatodea_contig8681:2450..2510Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8681 2451..2510 +
1694079879.8605301-CDS-S-dermatodea_contig8681:2450..25101694079879.8605301-CDS-S-dermatodea_contig8681:2450..2510Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8681 2451..2510 +
1622925359.2010384-CDS-S-dermatodea_contig8681:4045..41801622925359.2010384-CDS-S-dermatodea_contig8681:4045..4180Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8681 4046..4180 +
1694079879.883383-CDS-S-dermatodea_contig8681:4045..41801694079879.883383-CDS-S-dermatodea_contig8681:4045..4180Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8681 4046..4180 +
1622925359.2134058-CDS-S-dermatodea_contig8681:5473..56261622925359.2134058-CDS-S-dermatodea_contig8681:5473..5626Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8681 5474..5626 +
1694079879.8988824-CDS-S-dermatodea_contig8681:5473..56261694079879.8988824-CDS-S-dermatodea_contig8681:5473..5626Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8681 5474..5626 +
1622925359.2229898-CDS-S-dermatodea_contig8681:6755..68751622925359.2229898-CDS-S-dermatodea_contig8681:6755..6875Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8681 6756..6875 +
1694079879.9078674-CDS-S-dermatodea_contig8681:6755..68751694079879.9078674-CDS-S-dermatodea_contig8681:6755..6875Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8681 6756..6875 +
1622925359.2328863-CDS-S-dermatodea_contig8681:7734..78511622925359.2328863-CDS-S-dermatodea_contig8681:7734..7851Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8681 7735..7851 +
1694079879.9185371-CDS-S-dermatodea_contig8681:7734..78511694079879.9185371-CDS-S-dermatodea_contig8681:7734..7851Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8681 7735..7851 +
1622925359.2452123-CDS-S-dermatodea_contig8681:8819..88941622925359.2452123-CDS-S-dermatodea_contig8681:8819..8894Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8681 8820..8894 +
1694079879.9323366-CDS-S-dermatodea_contig8681:8819..88941694079879.9323366-CDS-S-dermatodea_contig8681:8819..8894Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8681 8820..8894 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8681.16829.1

>prot_S-dermatodea_contig8681.16829.1 ID=prot_S-dermatodea_contig8681.16829.1|Name=mRNA_S-dermatodea_contig8681.16829.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=220bp
MEINKVKTIEAIQASHDGSDMTQHSFRPEICAESVKIHLESNKGDFLQRV
ARDAARKEHEAMRQQAAGKHDPDCTFKPQITARSANLQPRSVVELSRGDQ
LKRETTQRLTKLRAEQQELLAGTTFRPRINDDPASQMAVSRLKVVSDPDG
YIATVEEIRRRKQESAVRGAMERAVKEVAGCTFRPQTTACPAYIKRIAQS
ISTSKAGAKKQTRVKPDWR*
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mRNA from alignment at S-dermatodea_contig8681:2403..8954+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8681.16829.1 ID=mRNA_S-dermatodea_contig8681.16829.1|Name=mRNA_S-dermatodea_contig8681.16829.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=6552bp|location=Sequence derived from alignment at S-dermatodea_contig8681:2403..8954+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGCGACACGAGCAGCAGCTTTCACGCTTTCCTGTCTCGTCAGAACAAGAT
GGAGATTAACAAGGTCAAAACTATAGAGGCCATACAGGCAAGTCACGACG
GTTCGGACGTGGAGATATCGGTATTTTCCTCGATATAATCTATGAATACT
ACTTTTAATACTACCGTATTAAAAATACAACGGAGAATGTCACCGTACAG
GTTTATTTGATTATAATTGATTTGACCATCACACTTACAACCGACCAGCC
CACCAATTAATGGCTGCCGATCCCGCTGGTTGTCAGAGGATAAATCGAGA
AATCAATCGAAAAGAAAAACAAAAATGGTGCCACACGCGCCAAGATTTTC
GTGCGAGTGGGATCCACTTACATGTGTATTGTGGGCAGCCACGGCTACTA
CGCCCGTGCGGTGTTCGTTGAAACAAATCACTACTCTGTAATGTACCACT
CTAAAATATATATGACGTTCGGCATCACGAATTGTATAGGAAATTCGGCA
TCAAAGGTCAACTCTAAATCGCTATTAAGAAACGTGCAAAGCGGTAAAAA
TTTATAAACTAGTGTGTAGCCACGGCTACGCCCGTGAGGTGTTCGTTAGC
ACAAATTACTACTCTGTAAGTTACCACTCTAAAATATATATGACGATCGG
CATCACGAATTGTATAGGAAAGTCGGCACCACAGGTCAACTCTAATTTTC
TAAATGTATTTAAAAGCGCGCAATAAAGATGCGAAGGCTCTGACACCCAG
AACAGACTCGAATTTCCCTGCTGCTCTGATATGAAGTATGTCGGGAGAGA
ATCGTGTGCGCACCCCAGTCTTAGATGGCATCTGTATTCCACGCGAAGAA
AGACGAGTTGACCAGAAAGCCGAGAGCCTCCTGATATCGCCCCGGTGATG
GATTTTGCCAAAAGGGCGGTTCAAATCATGACTCACGGTTCGCCGGGGTA
AGTTCTGCTGAGCCAAATTTTGCGCTTGGGGAGTCGCCTGGACCATGCTC
TACTATTGTAGGGATATTCTATATTTTATTTCGGGCGGCCATGAAACCAT
GTCAGTTTTGTGTACAACAAAGTCCACCCGGGTCCTGTCCTGTCCCGATG
GATTATTTTATGGATTGTATAGTACACTTTCTGTGCTCTGTTTCTTTACA
AAAATAACGATGTGTAATCCCTGCTGCGGTGGTCAGAGGTGAGAGCGATC
GAACATGTCACAAAGTAAAAGAGCGAGCACTCCCGGCTCCATTCCTCCTG
AGCAAGACTTGGAACTCCTCCCTCTCCATTCTTGGTGGGATACTCCGTAT
GTACCTTCTGTGGCAATTTGCGACCACGAGCGGGATACGAGTGGAGAAGG
CGATCGACTGCATGTGTGATAATAACATTAATATTAGTACTACTACAACT
ACAACTGTTAATAATCATAATCATAATAATAATCATCGCTTCCGGAGGGT
GTGACGAAAACACTGCGCGAAGAACGGTGGTCCTTGCCCCCACGCTATCT
GCTCAATCCGGTCACCTTTCGCAATATATTTTTACGAATGAAACCACCCA
CTATTCGAGGAATGCCTCCACATCCTGTGAAACCCGCCCCTTCACTATTA
ATGCTATGTATCATAACGGTTGCGAATTTTTACACTTCAGGAGATGACCC
AGCATTCGTTTCGACCTGAAATATGCGCCGAGAGCGTGAAGATTCACCTG
GAGAGCAACAAGGGGGACTTCCTCCAGAGGGTGGCCAGGGACGCCGCCAG
AAAAGAGCACGAGGCGATGCGCCAGCAGGTAGCTCTATAGTTGAAGTGCA
AATATTGTGTTTGGGGTTTGTGTGTGTGCGTGTATGTGGGTGTATGCTTT
ATTGTGTTTAGTTGTTTACCGCACGTAAAATGTACGGCATCGCTCTACAA
AAGACTTCTTCTCATCCCGAGCGTTTGTTTGCGTTAATTATTTCTTCTGT
ACTCTGTAGATAGGTAACTCCATACGTTTTGTTTATTTATAGATTTCTCG
TCTGACCACAAGCGGGATCGGCAACCGGTCGTCGGTGTAAGCTTGTGTGA
TGTTCAATCAATCAATCAAATCAAACAATCACCCTGGTAATAGACGATTT
GCCTACAGGTACAGGTGCGGTACGTGGTGAGTATTTAGAGTGCATACATA
TATACGTGGCTAAAAAATAGCTAAGCGGAAAGAAAAACAGGACACTGCTA
CTGCATACTATTCAGAACATTAGAAACGCAACGAGGCGCAAGATGTTTTG
TCACGGCAGGGTGGGCGGACCAAAATAAATGAAACAAGGTATGTGAAACA
AACAAATCCACCGAAGAACGAGGTATTTCGATTGTTGGACAAGCTGGGAC
AACCCCCTTACATCTACAAACAGAAGTGGACGGTTTTTTCGACCAAATAG
CAAACCTATCGATCAAACGATCGATCCGAAACGACTGCATGAACCGATCT
AACAGCATCACTCACGAAACCACAACCAACCCCGAAAAACGCCTCCATAT
TCTCTAGACGGGGGACGAGGGAGACTAGGGGGTGGGTATGTTCCTATTCC
TCTGCTTCTTCCTTTGTCTGTCTCTTTGTTTGCTCTTTTTCTCAGTCTGG
GCTACGACTCTCATCTCCCGCGCTCGTTGCTCACGGTGTTACGTTTTTTT
TATGTGTTCCTTTGGGCTCTTTTCTTTTTGGGTGCGTGACGGTTTCCGGA
CTCGATAAGGACATCGCAGGTGCACTGAGCCCTCCCTGTAGTACAGAGGA
CCGTTCTTCTTCTTTTATTTATTTTCTCTTTAGAAGCCCGAGTCCGAGGT
ATGCCCCCTCTGTTTCCGAGAGTTAGTTTATGTCAATTCCTTCTTCGTAT
GTATAATACTATAGAGGTAATCCCGTAGGTGTTTTTTTCGATCTCTCGAT
TTCTCATCTGACCACGAACGGGACCGGCAACCATTGGTTGGTGGGCCGGT
CGGTTGTAAGTGTGATAATCAACCAATCAATAATCAAGCCACAAATATAT
GACCTGTGGCAACCGACCAAAGCCGACTTATTTACGCCTTGGCGTTGTTG
GTTCTCTTCGTATGCCCGCAGGCGGCGGGAAAGCACGATCCCGACTGCAC
CTTCAAGCCGCAAATCACGGCGCGCTCTGCCAACTTACAGCCGAGGAGCG
TGGTGGAGCTTAGCAGGGGGGACCAGCTCAAGAGAGAGACCACGCAGCGC
CTCACGAAGCTCAGGGCAGAGCAGGTATACGTGGCACGTTGTAGCATGCT
GTATCATATGCATTAATTAGTACCGCTTTGCATGTTTTTTTATCGGTATT
TTTATTTAGAGTTGATTTTTCTGCGTAAAATAACAGCGATTTAGAGTTGA
GCGGTGAACCATTACTTGAAGCCAGCATTCACAGTGATTTCAGAGGGGTC
CCTTTTAAACACGTGTTGAAAAGGGTAGTACTTTGCACCTCACGGGCGTA
GCCTAGCCGTGGCCACCTACTATTAGTAGTATAATATTATATGCATTGCA
GATTGAATGCGTATCATAAATATGTAGAGCCTTTATCACAGTCGTTTAAA
GCGTGTGCCACTTGCACATATACAAGCCTTTAGGGCGCCATAGTATATAT
TTAGAGCTAAGCAGTGCCTCAAGAAAGATATGTCAGTGATCAATTCCGTC
AGAACGGAACTGGGTTGCTGTAACCACACGCAGTAGACCACTACGCTACA
GCGTATTACGGCCGATGGCGCGTAGTTTCCCAAGCCTTGCTCCGATCTAA
CCAAGGACAACGCCACAGAATTGACGGAGTCGTGTAGGAGAACATAGCGT
TGGAAGGGAGGGAGGGAGGGAGGGAGGGGGCGACGGAGGTTGTAGAGCGC
GGCTACTCCACAACAGTCATACTTGTACGTTAAATGGCAAGGTAGTATGG
GCGTACAAGCTCACTATTAATATTAATAGCAGGACGAGCAGAAGGAAGGA
TCCAATAAAAAAACAAAGAAACGTCAGTACGACAAAACTATGTACTGTAG
TAGAGGCAAATCTTATTGGGCTCACAAAGCACGTCAAAGCTACACTGCCA
GGATATAGCTCAGAAAAAAAAGACACTCTTACCATGATCCTAAAGAAAGA
AACAAAATGTCGACCCTGCCCGGATTTGAACCCGGGTTCTCCGCCTTAAT
CGGGCGTTGGTGAACCAGTTCAACCACGGGGCACGTGGCTTGCGGTCCTC
TGTACTATTTAATTATTGCTCGGAAAAAACGCCACTCGGGTCCTGTCCCG
ATGACTTATGAATTGTACACTCTCTGTGTTCTGTGTCTTGTTGTAAAAAT
AATGATTGCTCAACCTAGTCCCCACGCGATTGACACGAACACATATCTCC
GAGCAGGAGCTGCTGGCGGGCACCACCTTTCGACCAAGGATCAACGACGA
CCCGGCTTCACAAATGGCGGTCTCGCGTCTCAAGGTTGTGTCCGATCCCG
ACGGCTACATCGCAACTGTGGAGGTGTGTGTGTGTGTGTGTGCAGGGTCC
TCTTCTAAACCGAAACCGCTGCTTACCATTTTTGCGATCACTACTCTGCG
GGGGTGACTGGACAACCAAACCTTGCTATCACAGTCGGTTGGTTGATTGA
TGGTTTCATTAAATACCACACCTATAGCCGATCGGCTTAATCCTACCCGA
CGCGTGGTTCAGATGCGCAAAGAGTCAAGGAGAAAATTACTAATCAAAAC
TCGACTTGTTCAAGTACATAATACGGTCCCTGGTGCTTACTATAGCGTAA
GAGGGAAGAAATAGCCACCCCATATAATATATAGAAAATAGAGAAGGCCA
GAAGAGGAATCGGAATCGGACACAGTAGTACTCGACGTTATTCCTCATTT
TGATTTCGCCACGCACGGAATTAACACTAAAGAAAGTACATACCCAAAGG
CTGTGCAATGTGCACCTACGGACACGTTATTCTTTGCCTGTAAGCAAAAA
CTGTGGGACAACTCGCAGAAACCAAAACAAAAAACGTTCGCCGCTACCAT
ACATTTTTACTCGCAACTCTCAATCAATCAATCAATCAATCAATCGCCCC
TATGACATTTCGTTCATTTTATTCTTAGCAGGCCCAAGTTCCGAACTCCG
AACTACGCCCCCTCTGTTTCCGAGAGTTTGTGTCAATTCCTTATTTGGAT
GTAATATACCCGGTGTACTAAATAGTGTAATTCCGTGGGGGGTTTCCAAT
CTCTCGGTTTCTCATCTGACCACGGGCGGGATCGGCAACCATTGGGGGGC
CGGTCGGTTGTAAGGGTGGTAACTAATCAAGCAATCAATCAATCAATCAA
TCAATCAATCAAATCAATCAAATCAATGACAGGAAATCCGGCGACGCAAG
CAGGAGTCGGCCGTGAGAGGGGCGATGGAAAGAGCGGTGAAGGAGGTCGC
AGGGTGCACTTTCCGACCTCAGACTACAGCGTGCCCGGCTTACATCAAGG
TGATAAATTTTTCCCGTACTCCGACCCTGGGGGGGCGAACACAACGAATT
TGCACATTGTCGTGTAGTTTTGTCGGCGCCCCCGCCCGCAAGACGAGATG
CGGGTGTAACTCAAATGTCCGCGCGCACGCTCAGGTAATTGCTACATCTT
TATGAACCCTTTTGGCACTGAGTCCGTTTTGCTTGGAATATCATTATCAA
TGTCAATATCGATATAATTATCAATATCAATATCAATATCAATATCAATA
GCAATATCAATATCAATATCAATATAATTATCAATGTCAATATCAATAAC
AATATCAATGTCGTCACTGCGAGTATATTGTGGCGAGGGTGCACGCACAT
GCGCACCACGTGCGTGCCAGCTATTGTATGTACTCGCCGCAGGGCTGGCA
CTTTCCCACTGCCAAAATTAATACTATTAATAATATTAAAGCTATTAATA
GCATTAATAGTATACTACTACTGTATGTATGTACGGCGAGGAGAAATCCA
CCGTTCGGGTAGTGTACCTGTTCGATGCGAAATACAGCCCAGTTCCGAAG
GGTTGATTAATACCGCTTTTTTCACGTTTTTAATAGCGATTTAGAGTTGA
CCTTTGATGCAATTTTTTCCCAACAATTCGTGTGAGGAACTTCCTATATA
GTTGGTGATGCCAAATGCCATAGGTATTTTAGAGTGGTGCATTTACAGAG
TAGTAATTTGTACCAACGTACCTCTCACGGGCGTACCCGTGGCTACCCGC
TATTAATAGTATACAATGAATACCGGGAAAGGGGCTTTGAAGCATCATCG
GTCGCTGTTATGATAGTATTATCCAAGGCCAGGCCACGATACTTCGGAGG
CGAGTGAACACTTAGGGAACCTTGACAACCATCTCTGTTTCCCTTTCGCC
CCCACCCCCCACCCCCCACCCCCCTCCGCTGCTTTACAAACGGATGTTTG
TCACACCCTCATTTCAGCGCATCGCCCAAAGCATCTCCACATCTAAGGCC
GGCGCCAAGAAACAAACGCGGGTTAAACCCGACTGGCGATGACGCATCAC
ATTTTTGCGGTTATATATCGTGCATCAATCTAGCAAATGGGCGAGCCTCG
GC
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Coding sequence (CDS) from alignment at S-dermatodea_contig8681:2403..8954+

>mRNA_S-dermatodea_contig8681.16829.1 ID=mRNA_S-dermatodea_contig8681.16829.1|Name=mRNA_S-dermatodea_contig8681.16829.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1320bp|location=Sequence derived from alignment at S-dermatodea_contig8681:2403..8954+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAGATTAACAAGGTCAAAACTATAGAGGCCATACAGGCAAGTCACGA
CGGTTCGGACATGGAGATTAACAAGGTCAAAACTATAGAGGCCATACAGG
CAAGTCACGACGGTTCGGACATGACCCAGCATTCGTTTCGACCTGAAATA
TGCGCCGAGAGCGTGAAGATTCACCTGGAGAGCAACAAGGGGGACTTCCT
CCAGAGGGTGGCCAGGGACGCCGCCAGAAAAGAGCACGAGGCGATGCGCC
AGCAGATGACCCAGCATTCGTTTCGACCTGAAATATGCGCCGAGAGCGTG
AAGATTCACCTGGAGAGCAACAAGGGGGACTTCCTCCAGAGGGTGGCCAG
GGACGCCGCCAGAAAAGAGCACGAGGCGATGCGCCAGCAGGCGGCGGGAA
AGCACGATCCCGACTGCACCTTCAAGCCGCAAATCACGGCGCGCTCTGCC
AACTTACAGCCGAGGAGCGTGGTGGAGCTTAGCAGGGGGGACCAGCTCAA
GAGAGAGACCACGCAGCGCCTCACGAAGCTCAGGGCAGAGCAGGCGGCGG
GAAAGCACGATCCCGACTGCACCTTCAAGCCGCAAATCACGGCGCGCTCT
GCCAACTTACAGCCGAGGAGCGTGGTGGAGCTTAGCAGGGGGGACCAGCT
CAAGAGAGAGACCACGCAGCGCCTCACGAAGCTCAGGGCAGAGCAGCAGG
AGCTGCTGGCGGGCACCACCTTTCGACCAAGGATCAACGACGACCCGGCT
TCACAAATGGCGGTCTCGCGTCTCAAGGTTGTGTCCGATCCCGACGGCTA
CATCGCAACTGTGGAGCAGGAGCTGCTGGCGGGCACCACCTTTCGACCAA
GGATCAACGACGACCCGGCTTCACAAATGGCGGTCTCGCGTCTCAAGGTT
GTGTCCGATCCCGACGGCTACATCGCAACTGTGGAGGAAATCCGGCGACG
CAAGCAGGAGTCGGCCGTGAGAGGGGCGATGGAAAGAGCGGTGAAGGAGG
TCGCAGGGTGCACTTTCCGACCTCAGACTACAGCGTGCCCGGCTTACATC
AAGGAAATCCGGCGACGCAAGCAGGAGTCGGCCGTGAGAGGGGCGATGGA
AAGAGCGGTGAAGGAGGTCGCAGGGTGCACTTTCCGACCTCAGACTACAG
CGTGCCCGGCTTACATCAAGCGCATCGCCCAAAGCATCTCCACATCTAAG
GCCGGCGCCAAGAAACAAACGCGGGTTAAACCCGACTGGCGATGACGCAT
CGCCCAAAGCATCTCCACATCTAAGGCCGGCGCCAAGAAACAAACGCGGG
TTAAACCCGACTGGCGATGA
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