mRNA_S-dermatodea_contig8679.16827.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8679.16827.1
Unique NamemRNA_S-dermatodea_contig8679.16827.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8679.16827.1 vs. uniprot
Match: Q8QN78_ESV1K (EsV-1-212 n=2 Tax=root TaxID=1 RepID=Q8QN78_ESV1K)

HSP 1 Score: 117 bits (292), Expect = 1.270e-32
Identity = 59/81 (72.84%), Postives = 67/81 (82.72%), Query Frame = 1 
Query:    1 AQQEHSEEHKAKIAAWKSRSCPKADDIFSGCIASQLREDLRGKVSYIKINGEGPITPVADMETLGRMVRLLQKEGAAELFQ 243
            A+++ SEEHKAKIAA K RS PK  DI++GCIASQLR DL+GKVSYI+INGEGPI PVADMETL RM RLLQ E   +LFQ
Sbjct:    3 AKKKRSEEHKAKIAARKLRSSPKTPDIWNGCIASQLRNDLKGKVSYIRINGEGPIEPVADMETLERMARLLQTEDGRKLFQ 83
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8679.16827.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q8QN78_ESV1K1.270e-3272.84EsV-1-212 n=2 Tax=root TaxID=1 RepID=Q8QN78_ESV1K[more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8679contigS-dermatodea_contig8679:8411..8656 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-212
Ec32 orthologEc-06_004880.1
Exons1
Model size246
Cds size246
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925359.0046275-CDS-S-dermatodea_contig8679:8410..86561622925359.0046275-CDS-S-dermatodea_contig8679:8410..8656Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8679 8411..8656 -
1694079879.7338488-CDS-S-dermatodea_contig8679:8410..86561694079879.7338488-CDS-S-dermatodea_contig8679:8410..8656Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8679 8411..8656 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8679.16827.1prot_S-dermatodea_contig8679.16827.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8679 8411..8656 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8679.16827.1

>prot_S-dermatodea_contig8679.16827.1 ID=prot_S-dermatodea_contig8679.16827.1|Name=mRNA_S-dermatodea_contig8679.16827.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=82bp
AQQEHSEEHKAKIAAWKSRSCPKADDIFSGCIASQLREDLRGKVSYIKIN
GEGPITPVADMETLGRMVRLLQKEGAAELFQ*
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mRNA from alignment at S-dermatodea_contig8679:8411..8656-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8679.16827.1 ID=mRNA_S-dermatodea_contig8679.16827.1|Name=mRNA_S-dermatodea_contig8679.16827.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=246bp|location=Sequence derived from alignment at S-dermatodea_contig8679:8411..8656- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCCAACAAGAACACTCCGAGGAACACAAGGCGAAGATCGCTGCATGGAA
ATCGCGAAGTTGCCCCAAAGCCGACGACATATTTTCGGGGTGCATTGCAT
CGCAGCTGCGTGAAGACCTCCGGGGCAAGGTCTCGTACATCAAAATCAAC
GGAGAGGGGCCCATTACCCCGGTAGCCGACATGGAAACCCTCGGTCGCAT
GGTCCGACTCCTACAGAAAGAGGGTGCTGCAGAGTTGTTTCAATAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8679:8411..8656-

>mRNA_S-dermatodea_contig8679.16827.1 ID=mRNA_S-dermatodea_contig8679.16827.1|Name=mRNA_S-dermatodea_contig8679.16827.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at S-dermatodea_contig8679:8411..8656- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCCAACAAGAACACTCCGAGGAACACAAGGCGAAGATCGCTGCATGGAA
ATCGCGAAGTTGCCCCAAAGCCGACGACATATTTTCGGGGTGCATTGCAT
CGCAGCTGCGTGAAGACCTCCGGGGCAAGGTCTCGTACATCAAAATCAAC
GGAGAGGGGCCCATTACCCCGGTAGCCGACATGGAAACCCTCGGTCGCAT
GGTCCGACTCCTACAGAAAGAGGGTGCTGCAGAGTTGTTTCAATAGGCCC
AACAAGAACACTCCGAGGAACACAAGGCGAAGATCGCTGCATGGAAATCG
CGAAGTTGCCCCAAAGCCGACGACATATTTTCGGGGTGCATTGCATCGCA
GCTGCGTGAAGACCTCCGGGGCAAGGTCTCGTACATCAAAATCAACGGAG
AGGGGCCCATTACCCCGGTAGCCGACATGGAAACCCTCGGTCGCATGGTC
CGACTCCTACAGAAAGAGGGTGCTGCAGAGTTGTTTCAATAG
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