mRNA_S-dermatodea_contig8679.16826.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8679.16826.1
Unique NamemRNA_S-dermatodea_contig8679.16826.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8679.16826.1 vs. uniprot
Match: Q8QNP2_ESV1K (EsV-1-19 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNP2_ESV1K)

HSP 1 Score: 412 bits (1058), Expect = 1.030e-144
Identity = 198/224 (88.39%), Postives = 212/224 (94.64%), Query Frame = 1 
Query:    1 MDSVRHCAAKLGYTVIERKIASKAVSDVYAELEVITRVCAKDKTKIFVFSDKDDIAKIQEWREGFGHESRECQTVFVWDSLIYYMGKSDKPKTLKEWELLLSKQQSQECVTCFERITKSMDARPCLTCHAMCCADCNWKQSLPECPVCKAFDMKSYVRNRGVYAAQLLPQLGISMADIKKSKDMCANQIKELTGFEHLDDLIDSAMVTAGEKVYDVRGQLILAR 672
            MDSVR CAAKLGYTVI+RKI++KAV DVYAELE+ITRVCAKDKTK+FVFSDKDDIAKIQEWREGFG+ESREC T+FVWDSLIYY+ +SDKPKTLKEWELLLSKQQS ECV CFERIT S DARPCLTCHAMCCADCNWKQSLPECPVCKAFDMKSYVRNRGVYAAQLLPQLGI MAD+KKSKDMCA+QIKELTGF+HL+DLIDSAMV AGEKVYDVR QL L+R
Sbjct:    1 MDSVRLCAAKLGYTVIDRKISAKAVPDVYAELEIITRVCAKDKTKVFVFSDKDDIAKIQEWREGFGNESRECHTIFVWDSLIYYISESDKPKTLKEWELLLSKQQSLECVICFERITASADARPCLTCHAMCCADCNWKQSLPECPVCKAFDMKSYVRNRGVYAAQLLPQLGIPMADVKKSKDMCASQIKELTGFDHLEDLIDSAMVAAGEKVYDVRDQLTLSR 224
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8679.16826.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q8QNP2_ESV1K1.030e-14488.39EsV-1-19 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8679contigS-dermatodea_contig8679:7672..8349 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size678
Cds size678
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925358.9679618-CDS-S-dermatodea_contig8679:7671..83491622925358.9679618-CDS-S-dermatodea_contig8679:7671..8349Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8679 7672..8349 -
1694079879.7249207-CDS-S-dermatodea_contig8679:7671..83491694079879.7249207-CDS-S-dermatodea_contig8679:7671..8349Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8679 7672..8349 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8679.16826.1prot_S-dermatodea_contig8679.16826.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8679 7672..8349 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8679.16826.1

>prot_S-dermatodea_contig8679.16826.1 ID=prot_S-dermatodea_contig8679.16826.1|Name=mRNA_S-dermatodea_contig8679.16826.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=226bp
MDSVRHCAAKLGYTVIERKIASKAVSDVYAELEVITRVCAKDKTKIFVFS
DKDDIAKIQEWREGFGHESRECQTVFVWDSLIYYMGKSDKPKTLKEWELL
LSKQQSQECVTCFERITKSMDARPCLTCHAMCCADCNWKQSLPECPVCKA
FDMKSYVRNRGVYAAQLLPQLGISMADIKKSKDMCANQIKELTGFEHLDD
LIDSAMVTAGEKVYDVRGQLILART*
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mRNA from alignment at S-dermatodea_contig8679:7672..8349-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8679.16826.1 ID=mRNA_S-dermatodea_contig8679.16826.1|Name=mRNA_S-dermatodea_contig8679.16826.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=678bp|location=Sequence derived from alignment at S-dermatodea_contig8679:7672..8349- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGACTCCGTCAGGCATTGTGCAGCCAAGCTCGGCTACACCGTCATCGA
GAGAAAGATTGCTTCAAAAGCGGTCTCTGACGTGTACGCGGAGCTCGAAG
TAATCACGCGCGTGTGCGCGAAGGACAAGACTAAGATATTCGTGTTCTCG
GACAAAGATGACATTGCAAAAATCCAAGAGTGGCGCGAAGGGTTCGGACA
CGAATCACGGGAGTGTCAAACGGTCTTCGTGTGGGACAGCCTGATTTACT
ACATGGGCAAGTCAGACAAGCCCAAGACGCTGAAGGAGTGGGAGCTTTTA
CTCTCGAAGCAGCAATCCCAAGAGTGTGTCACTTGCTTCGAACGTATAAC
GAAATCGATGGATGCACGCCCCTGCCTCACGTGCCACGCAATGTGTTGCG
CTGATTGCAATTGGAAGCAGTCTCTCCCGGAATGCCCGGTCTGCAAAGCC
TTCGACATGAAAAGCTACGTGCGTAATCGGGGCGTGTACGCGGCCCAGCT
GCTTCCACAGCTGGGTATCTCGATGGCCGACATAAAAAAGTCGAAAGACA
TGTGCGCGAACCAAATCAAAGAGCTAACCGGGTTCGAGCATCTAGATGAC
TTGATTGACAGTGCAATGGTGACGGCCGGGGAGAAGGTTTACGACGTGCG
AGGCCAGTTGATCCTTGCCCGAACTTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig8679:7672..8349-

>mRNA_S-dermatodea_contig8679.16826.1 ID=mRNA_S-dermatodea_contig8679.16826.1|Name=mRNA_S-dermatodea_contig8679.16826.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1356bp|location=Sequence derived from alignment at S-dermatodea_contig8679:7672..8349- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGACTCCGTCAGGCATTGTGCAGCCAAGCTCGGCTACACCGTCATCGA
GAGAAAGATTGCTTCAAAAGCGGTCTCTGACGTGTACGCGGAGCTCGAAG
TAATCACGCGCGTGTGCGCGAAGGACAAGACTAAGATATTCGTGTTCTCG
GACAAAGATGACATTGCAAAAATCCAAGAGTGGCGCGAAGGGTTCGGACA
CGAATCACGGGAGTGTCAAACGGTCTTCGTGTGGGACAGCCTGATTTACT
ACATGGGCAAGTCAGACAAGCCCAAGACGCTGAAGGAGTGGGAGCTTTTA
CTCTCGAAGCAGCAATCCCAAGAGTGTGTCACTTGCTTCGAACGTATAAC
GAAATCGATGGATGCACGCCCCTGCCTCACGTGCCACGCAATGTGTTGCG
CTGATTGCAATTGGAAGCAGTCTCTCCCGGAATGCCCGGTCTGCAAAGCC
TTCGACATGAAAAGCTACGTGCGTAATCGGGGCGTGTACGCGGCCCAGCT
GCTTCCACAGCTGGGTATCTCGATGGCCGACATAAAAAAGTCGAAAGACA
TGTGCGCGAACCAAATCAAAGAGCTAACCGGGTTCGAGCATCTAGATGAC
TTGATTGACAGTGCAATGGTGACGGCCGGGGAGAAGGTTTACGACGTGCG
AGGCCAGTTGATCCTTGCCCGAACTTGAATGGACTCCGTCAGGCATTGTG
CAGCCAAGCTCGGCTACACCGTCATCGAGAGAAAGATTGCTTCAAAAGCG
GTCTCTGACGTGTACGCGGAGCTCGAAGTAATCACGCGCGTGTGCGCGAA
GGACAAGACTAAGATATTCGTGTTCTCGGACAAAGATGACATTGCAAAAA
TCCAAGAGTGGCGCGAAGGGTTCGGACACGAATCACGGGAGTGTCAAACG
GTCTTCGTGTGGGACAGCCTGATTTACTACATGGGCAAGTCAGACAAGCC
CAAGACGCTGAAGGAGTGGGAGCTTTTACTCTCGAAGCAGCAATCCCAAG
AGTGTGTCACTTGCTTCGAACGTATAACGAAATCGATGGATGCACGCCCC
TGCCTCACGTGCCACGCAATGTGTTGCGCTGATTGCAATTGGAAGCAGTC
TCTCCCGGAATGCCCGGTCTGCAAAGCCTTCGACATGAAAAGCTACGTGC
GTAATCGGGGCGTGTACGCGGCCCAGCTGCTTCCACAGCTGGGTATCTCG
ATGGCCGACATAAAAAAGTCGAAAGACATGTGCGCGAACCAAATCAAAGA
GCTAACCGGGTTCGAGCATCTAGATGACTTGATTGACAGTGCAATGGTGA
CGGCCGGGGAGAAGGTTTACGACGTGCGAGGCCAGTTGATCCTTGCCCGA
ACTTGA
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