mRNA_S-dermatodea_contig8678.16825.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8678.16825.1
Unique NamemRNA_S-dermatodea_contig8678.16825.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig8678.16825.1 vs. uniprot
Match: D7FIC1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIC1_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 1.330e-35
Identity = 70/121 (57.85%), Postives = 86/121 (71.07%), Query Frame = 1 
Query:    1 KGIKGWQAVFKGWGKGVQSTAKKSGVLQGLLAGFLSAPYLLQRLGDFDPGLEFKAAMVYADATNSPKPLLD-ENSSNFPERGAGGGAAACAVVLGDRDVQETLRRIGGALTAMTGRREEGE 360
            +G + W + F  W KGV+ T+ KSG++QG+L+G LSAPY++QRLGDFDPGLEFK AMVYAD +  P            P  G G G   C+VVLGDRDVQETLRR+GGALTA+TGR E G+
Sbjct:  173 EGKERWASAFSSWAKGVKKTSAKSGLVQGILSGLLSAPYVVQRLGDFDPGLEFKTAMVYADPSVRPGYSTGVARGMVSPAAGGGAGPGECSVVLGDRDVQETLRRLGGALTALTGRGEGGD 293
[Close]
BLAST of mRNA_S-dermatodea_contig8678.16825.1 vs. uniprot
Match: A0A835YJK9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJK9_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 5.150e-12
Identity = 41/100 (41.00%), Postives = 56/100 (56.00%), Query Frame = 1 
Query:   22 AVFKGWGKGVQSTAKKSGVLQGLLAGFLSAPYLLQRLGDFDPGLEFKAAMVYADATNSPKPLLDENSSNFPERGAGGGAAACAVVLGDRDVQETLRRIGG 321
            AV  GW +G++ST +K G+LQ L AG +S+ YL Q+L +FDPG EFK AM  ++A       +D                   +VLGDRD+ ETL R+ G
Sbjct:   56 AVLGGWVRGLKSTQQKKGLLQALTAGLVSSGYLWQKLNNFDPGCEFKTAMALSNARG-----ID-------------------IVLGDRDINETLGRLNG 131
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8678.16825.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FIC1_ECTSI1.330e-3557.85Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YJK9_9STRA5.150e-1241.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8678contigS-dermatodea_contig8678:2867..4390 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.1
Seed ortholog evalue5.4e-30
Seed eggNOG ortholog2880.D7FIC1
EggNOG OGs2SW75@2759,COG1916@1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size365
Cds size363
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925358.914635-CDS-S-dermatodea_contig8678:2868..31471622925358.914635-CDS-S-dermatodea_contig8678:2868..3147Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8678 2869..3147 -
1694079879.699999-CDS-S-dermatodea_contig8678:2868..31471694079879.699999-CDS-S-dermatodea_contig8678:2868..3147Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8678 2869..3147 -
1622925358.9244184-CDS-S-dermatodea_contig8678:4306..43901622925358.9244184-CDS-S-dermatodea_contig8678:4306..4390Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8678 4307..4390 -
1694079879.7139618-CDS-S-dermatodea_contig8678:4306..43901694079879.7139618-CDS-S-dermatodea_contig8678:4306..4390Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8678 4307..4390 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8678.16825.1prot_S-dermatodea_contig8678.16825.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8678 2869..4390 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8678.16825.1

>prot_S-dermatodea_contig8678.16825.1 ID=prot_S-dermatodea_contig8678.16825.1|Name=mRNA_S-dermatodea_contig8678.16825.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=121bp
KGIKGWQAVFKGWGKGVQSTAKKSGVLQGLLAGFLSAPYLLQRLGDFDPG
LEFKAAMVYADATNSPKPLLDENSSNFPERGAGGGAAACAVVLGDRDVQE
TLRRIGGALTAMTGRREEGEG
back to top

mRNA from alignment at S-dermatodea_contig8678:2867..4390-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8678.16825.1 ID=mRNA_S-dermatodea_contig8678.16825.1|Name=mRNA_S-dermatodea_contig8678.16825.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1524bp|location=Sequence derived from alignment at S-dermatodea_contig8678:2867..4390- (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGGGCATAAAGGGCTGGCAGGCGGTGTTCAAGGGCTGGGGGAAGGGGGT
CCAGAGCACGGCAAAAAAATCCGGTGTGCTGCAGGTATGTACCGCAGGCA
AATGCAGTGCAAGCGTGGTATGATATGTATTGATTTTTGGTTGATTGTTT
GATTGGTTGATTGATTGATTGATTGATGGATTGAATGAATGATTGGTTGG
TTGATTGATGGATTGAGTGAATGATTGGTTGGTTGGTTGATGGATTGATG
GATGGATTGATTGATTGATTGATTGCTTTGATTGATTGATTGATTGATTC
ATTGACTGTCGCACTTACAACCGACCGGCCCACCAAAGGCTGCCGATCCC
GCTCATGGTCAGATAAGAAATCCAGAAGTGGGAATAAAACCCAAGGAACT
ATTATACCTATAATGTAGAATGTACAGTCAACGCAGGGAATTAAACATGC
AGGCACTGTATGTAGGCTTGCAGGGTTTGTATGTGGGCATGCAGGTATGT
TTTTTATGTGCGGGTATGAAAGCATGCCGGTACTGTGTGTAGGCATGCAG
GGTATGTATGCCGGGTATGTATGCAGTAGGCAGGATAGCAAAATTGTGTT
TGCACCACCTTTTGGCGAAGAAGAAAAAAACGAAAGGAACGAGTGGCCAT
CGGCGATAGATCGATCCTGTGGTAACAATGCTCCTCCGTCCTCTCTAGAA
CGCGTGGTCAGTATGGTCTAACATCGATTTGATTGTTTTTTATTTTCATT
GATTGTCACACCTACAACCGACCGGCCCGCCACTATTTGCAATTGCAAAA
ATGATTACCGTATCGATCCCGCTAACGCGTGGTCACATGAAGGCAACCGG
AGCGAGTGAAATTCAGCACCCCAACACCGAACAAAAAACGTGATATTTAT
GTCCAGACATTACAAGAGATACAAACCCGCACGCGGCCCGGAACGCCTGA
CTCCCGGATTTACAGGAAACTTTAATATCATAAGGACGTGCTAGGATGCA
AGCACAAGCTACAGGGTTTATCTCTGACACGCTGCTTGCCATCAATCTAC
CATATCATACTTTATGCATTTTTATGCCAAGCTACAGAAACTTCCCGTCT
GAAGTGCTGTTCCCATGCCAAAAATGAGTACCCCCCCCCCCCCCCCGCAC
GCTCTCCCACTACCCTCCCTACACCTCAAACTCCCAAAATACCAACCGCT
ACATTAATGCCATGATAACATAATACGGACTATGACGCCGCAGGGCCTAC
TGGCGGGCTTTCTGAGCGCCCCGTACCTCCTACAGCGCCTCGGAGACTTC
GACCCGGGCCTGGAGTTCAAGGCGGCGATGGTCTACGCCGACGCGACGAA
CAGCCCGAAACCGTTGCTAGACGAAAACTCCTCGAATTTTCCCGAGAGAG
GAGCAGGAGGCGGGGCCGCCGCGTGCGCCGTGGTGCTCGGAGATAGGGAT
GTGCAGGAGACCCTGAGGCGCATCGGAGGGGCGCTGACTGCGATGACTGG
CCGTAGAGAGGAAGGCGAAGGGGG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig8678:2867..4390-

>mRNA_S-dermatodea_contig8678.16825.1 ID=mRNA_S-dermatodea_contig8678.16825.1|Name=mRNA_S-dermatodea_contig8678.16825.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at S-dermatodea_contig8678:2867..4390- (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGGGCATAAAGGGCTGGCAGGCGGTGTTCAAGGGCTGGGGGAAGGGGGT
CCAGAGCACGGCAAAAAAATCCGGTGTGCTGCAGAAGGGCATAAAGGGCT
GGCAGGCGGTGTTCAAGGGCTGGGGGAAGGGGGTCCAGAGCACGGCAAAA
AAATCCGGTGTGCTGCAGGGCCTACTGGCGGGCTTTCTGAGCGCCCCGTA
CCTCCTACAGCGCCTCGGAGACTTCGACCCGGGCCTGGAGTTCAAGGCGG
CGATGGTCTACGCCGACGCGACGAACAGCCCGAAACCGTTGCTAGACGAA
AACTCCTCGAATTTTCCCGAGAGAGGAGCAGGAGGCGGGGCCGCCGCGTG
CGCCGTGGTGCTCGGAGATAGGGATGTGCAGGAGACCCTGAGGCGCATCG
GAGGGGCGCTGACTGCGATGACTGGCCGTAGAGAGGAAGGCGAAGGGGGC
CTACTGGCGGGCTTTCTGAGCGCCCCGTACCTCCTACAGCGCCTCGGAGA
CTTCGACCCGGGCCTGGAGTTCAAGGCGGCGATGGTCTACGCCGACGCGA
CGAACAGCCCGAAACCGTTGCTAGACGAAAACTCCTCGAATTTTCCCGAG
AGAGGAGCAGGAGGCGGGGCCGCCGCGTGCGCCGTGGTGCTCGGAGATAG
GGATGTGCAGGAGACCCTGAGGCGCATCGGAGGGGCGCTGACTGCGATGA
CTGGCCGTAGAGAGGAAGGCGAAGGG
back to top