mRNA_S-dermatodea_contig12750.1682.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12750.1682.1
Unique NamemRNA_S-dermatodea_contig12750.1682.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12750.1682.1 vs. uniprot
Match: A0A6H5K7J4_9PHAE (Fructose-bisphosphatase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7J4_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 5.050e-39
Identity = 68/84 (80.95%), Postives = 76/84 (90.48%), Query Frame = 1 
Query:    1 MSLFHAREWWSTKLGDAEEFDRGSMAVGNADNDPDGNVKIVTGSFQGVLRVHYPVKAEFRIEDLLLEQDLGASILQISIGRFIP 252
            MSLF AREWWSTKLG+ EEFD+GSMA+GN DND  G VK+VTGSFQGVLRVH+PVKA+FRIEDLLLEQDLG  ILQ+S+GRFIP
Sbjct:    1 MSLFRAREWWSTKLGEGEEFDKGSMALGNVDNDSMGGVKVVTGSFQGVLRVHHPVKADFRIEDLLLEQDLGTPILQVSVGRFIP 84
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BLAST of mRNA_S-dermatodea_contig12750.1682.1 vs. uniprot
Match: D8LTW5_ECTSI (Bardet-Biedl syndrome 9, parathyroid hormone-responsive B1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTW5_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 3.230e-38
Identity = 66/84 (78.57%), Postives = 76/84 (90.48%), Query Frame = 1 
Query:    1 MSLFHAREWWSTKLGDAEEFDRGSMAVGNADNDPDGNVKIVTGSFQGVLRVHYPVKAEFRIEDLLLEQDLGASILQISIGRFIP 252
            MSLF AREWWSTKLG+ EEFD+GSMA+GN DND  G VK+VTGSFQGVLRVH+PV+A+FRIEDLLLEQDLG  I+Q+S+GRFIP
Sbjct:    1 MSLFRAREWWSTKLGEGEEFDKGSMALGNVDNDSMGGVKVVTGSFQGVLRVHHPVQADFRIEDLLLEQDLGTPIIQVSVGRFIP 84
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BLAST of mRNA_S-dermatodea_contig12750.1682.1 vs. uniprot
Match: A0A7J7QNP9_9CHLO (PTHB1 N-terminus-domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QNP9_9CHLO)

HSP 1 Score: 115 bits (289), Expect = 3.120e-28
Identity = 53/83 (63.86%), Postives = 66/83 (79.52%), Query Frame = 1 
Query:    1 MSLFHAREWWSTKLGDAEEFDRGSMAVGNADNDPDGNVKIVTGSFQGVLRVHYPVKAEFRIEDLLLEQDLGASILQISIGRFI 249
            MSLF +REWWST+LG  EEFD+GS+A+ N DNDP+GN KIVTGS QGVLRVH P +  + IED+LLE +L  SILQ++ G F+
Sbjct:    1 MSLFSSREWWSTRLGTGEEFDQGSIAIANIDNDPNGNAKIVTGSLQGVLRVHLPHQRGYHIEDMLLETELEGSILQLAAGHFL 83
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BLAST of mRNA_S-dermatodea_contig12750.1682.1 vs. uniprot
Match: A0A383VDZ0_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VDZ0_TETOB)

HSP 1 Score: 115 bits (288), Expect = 4.260e-28
Identity = 51/83 (61.45%), Postives = 67/83 (80.72%), Query Frame = 1 
Query:    1 MSLFHAREWWSTKLGDAEEFDRGSMAVGNADNDPDGNVKIVTGSFQGVLRVHYPVKAEFRIEDLLLEQDLGASILQISIGRFI 249
            MSLF +REWWST+LG AEEFD+GS+A+ N DNDP+GN KI+TGS QG+LRVH P +  + +ED+LLE +L  SILQ++ G F+
Sbjct:    1 MSLFSSREWWSTRLGTAEEFDQGSIAIANIDNDPNGNAKIITGSLQGMLRVHLPHQRGYHVEDMLLETELEGSILQLAAGNFL 83
[Close]
BLAST of mRNA_S-dermatodea_contig12750.1682.1 vs. uniprot
Match: A0A1Q9D133_SYMMI (Protein PTHB1 n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9D133_SYMMI)

HSP 1 Score: 107 bits (268), Expect = 8.180e-26
Identity = 47/83 (56.63%), Postives = 65/83 (78.31%), Query Frame = 1 
Query:    1 MSLFHAREWWSTKLGDAEEFDRGSMAVGNADNDPDGNVKIVTGSFQGVLRVHYPVKAEFRIEDLLLEQDLGASILQISIGRFI 249
            MSLF AREWWST++ + EEFD G + + N DN+P G  KI+TGS+QG+LR++YP + E++IEDL+LE ++ A ILQI  GRF+
Sbjct:  198 MSLFQAREWWSTQVSEDEEFDTGCLCLANIDNEPSGANKIITGSYQGMLRMYYPKQKEYKIEDLILESNMEAPILQIEAGRFV 280
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BLAST of mRNA_S-dermatodea_contig12750.1682.1 vs. uniprot
Match: A0A812JWP5_9DINO (Bbs9 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812JWP5_9DINO)

HSP 1 Score: 107 bits (268), Expect = 2.180e-25
Identity = 47/83 (56.63%), Postives = 65/83 (78.31%), Query Frame = 1 
Query:    1 MSLFHAREWWSTKLGDAEEFDRGSMAVGNADNDPDGNVKIVTGSFQGVLRVHYPVKAEFRIEDLLLEQDLGASILQISIGRFI 249
            MSLF AREWWST++ + EEFD G + + N DN+P G  KI+TGS+QG+LR++YP + E++IEDL+LE ++ A ILQI  GRF+
Sbjct:  198 MSLFQAREWWSTQVSEDEEFDTGCLCLANIDNEPSGANKIITGSYQGMLRMYYPKQKEYKIEDLILESNMEAPILQIEAGRFV 280
[Close]
BLAST of mRNA_S-dermatodea_contig12750.1682.1 vs. uniprot
Match: A0A7S0N219_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N219_9CHLO)

HSP 1 Score: 107 bits (267), Expect = 2.910e-25
Identity = 46/82 (56.10%), Postives = 61/82 (74.39%), Query Frame = 1 
Query:    1 MSLFHAREWWSTKLGDAEEFDRGSMAVGNADNDPDGNVKIVTGSFQGVLRVHYPVKAEFRIEDLLLEQDLGASILQISIGRF 246
            MSLF AR+WW    GD EEFD G + +GN DNDP G VK+VTGSFQG+LR++ P + +F++EDL+LEQ+L   I+Q+  G F
Sbjct:    1 MSLFKARDWWRVNCGDEEEFDGGCLCMGNVDNDPSGEVKVVTGSFQGMLRIYNPKERDFKVEDLMLEQNLEEPIIQVEAGHF 82
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BLAST of mRNA_S-dermatodea_contig12750.1682.1 vs. uniprot
Match: A0A813KPD2_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813KPD2_POLGL)

HSP 1 Score: 107 bits (266), Expect = 3.730e-25
Identity = 48/83 (57.83%), Postives = 65/83 (78.31%), Query Frame = 1 
Query:    1 MSLFHAREWWSTKLGDAEEFDRGSMAVGNADNDPDGNVKIVTGSFQGVLRVHYPVKAEFRIEDLLLEQDLGASILQISIGRFI 249
            MSLF AR+WWS +  + EEFD G + V N DN+P+G  KI+TGSFQG+LR++YP + E++IEDL+LE D+ A ILQI+ GRF+
Sbjct:    1 MSLFQARDWWSVQGSEEEEFDVGCLCVANIDNEPNGANKIITGSFQGMLRMYYPKQKEYKIEDLILEHDMEAPILQIASGRFV 83
[Close]
BLAST of mRNA_S-dermatodea_contig12750.1682.1 vs. uniprot
Match: A0A485L8B4_9STRA (Aste57867_17017 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L8B4_9STRA)

HSP 1 Score: 107 bits (266), Expect = 3.990e-25
Identity = 50/84 (59.52%), Postives = 62/84 (73.81%), Query Frame = 1 
Query:    1 MSLFHAREWWSTKLGDAEEFDRGSMAVGNADNDPDGNVKIVTGSFQGVLRVHYPVKAEFRIEDLLLEQDLGASILQISIGRFIP 252
            MSLF AREWW+   G AEEF  G++A+GN DNDP  + KIV GS  G+LRV+YP +AEF+IE LL+E+ L   ILQI +G FIP
Sbjct:    1 MSLFQAREWWTVTSGHAEEFTYGALAIGNVDNDPTPHDKIVIGSLNGMLRVYYPTQAEFKIEHLLMEEQLEYPILQIEVGAFIP 84
[Close]
BLAST of mRNA_S-dermatodea_contig12750.1682.1 vs. uniprot
Match: A0A662XF14_9STRA (PHTB1_N domain-containing protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XF14_9STRA)

HSP 1 Score: 102 bits (255), Expect = 6.390e-25
Identity = 48/84 (57.14%), Postives = 61/84 (72.62%), Query Frame = 1 
Query:    1 MSLFHAREWWSTKLGDAEEFDRGSMAVGNADNDPDGNVKIVTGSFQGVLRVHYPVKAEFRIEDLLLEQDLGASILQISIGRFIP 252
            MSLF  REWW+ K    EE+  G++ VGN DND  G+ KIVTGS  GVLR++YP ++EFRIE LLLE++L   ILQ+ +G FIP
Sbjct:    1 MSLFQVREWWAAKGESDEEYTPGALVVGNVDNDASGHAKIVTGSMNGVLRMYYPSQSEFRIEHLLLEENLRRPILQLELGYFIP 84
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12750.1682.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K7J4_9PHAE5.050e-3980.95Fructose-bisphosphatase n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTW5_ECTSI3.230e-3878.57Bardet-Biedl syndrome 9, parathyroid hormone-respo... [more]
A0A7J7QNP9_9CHLO3.120e-2863.86PTHB1 N-terminus-domain-containing protein n=1 Tax... [more]
A0A383VDZ0_TETOB4.260e-2861.45Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]
A0A1Q9D133_SYMMI8.180e-2656.63Protein PTHB1 n=2 Tax=Symbiodinium TaxID=2949 RepI... [more]
A0A812JWP5_9DINO2.180e-2556.63Bbs9 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A7S0N219_9CHLO2.910e-2556.10Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A813KPD2_POLGL3.730e-2557.83Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A485L8B4_9STRA3.990e-2559.52Aste57867_17017 protein n=1 Tax=Aphanomyces stella... [more]
A0A662XF14_9STRA6.390e-2557.14PHTB1_N domain-containing protein (Fragment) n=2 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12750contigS-dermatodea_contig12750:876..1130 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.7
Seed ortholog evalue4.8e-33
Seed eggNOG ortholog2880.D8LTW5
Preferred nameBBS9
KEGG koko:K19398
GOsGO:0000242,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005886,GO:0005929,GO:0006996,GO:0008104,GO:0008150,GO:0009987,GO:0015630,GO:0016020,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0030154,GO:0031090,GO:0031253,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034451,GO:0034464,GO:0034613,GO:0035869,GO:0036064,GO:0042995,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044459,GO:0044463,GO:0044464,GO:0044782,GO:0045444,GO:0048869,GO:0051179,GO:0051641,GO:0060170,GO:0060271,GO:0061512,GO:0070727,GO:0070925,GO:0071840,GO:0071944,GO:0098588,GO:0098590,GO:0120025,GO:0120031,GO:0120036,GO:0120038
EggNOG free text desc.cell projection organization
EggNOG OGsKOG3679@1,KOG3679@2759
COG Functional cat.JM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size255
Cds size255
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924260.1572726-CDS-S-dermatodea_contig12750:875..11301622924260.1572726-CDS-S-dermatodea_contig12750:875..1130Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12750 876..1130 -
1694079132.2303338-CDS-S-dermatodea_contig12750:875..11301694079132.2303338-CDS-S-dermatodea_contig12750:875..1130Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12750 876..1130 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12750.1682.1prot_S-dermatodea_contig12750.1682.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12750 876..1130 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12750.1682.1

>prot_S-dermatodea_contig12750.1682.1 ID=prot_S-dermatodea_contig12750.1682.1|Name=mRNA_S-dermatodea_contig12750.1682.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=85bp
MSLFHAREWWSTKLGDAEEFDRGSMAVGNADNDPDGNVKIVTGSFQGVLR
VHYPVKAEFRIEDLLLEQDLGASILQISIGRFIP*
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mRNA from alignment at S-dermatodea_contig12750:876..1130-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12750.1682.1 ID=mRNA_S-dermatodea_contig12750.1682.1|Name=mRNA_S-dermatodea_contig12750.1682.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=255bp|location=Sequence derived from alignment at S-dermatodea_contig12750:876..1130- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCTCTGTTCCACGCTAGAGAATGGTGGTCGACGAAGCTCGGGGACGC
CGAGGAGTTCGACAGGGGATCCATGGCCGTCGGAAACGCGGACAACGATC
CTGATGGAAACGTGAAAATCGTGACGGGGAGCTTCCAGGGCGTGCTGAGG
GTGCACTATCCCGTGAAGGCCGAATTTCGGATCGAGGATCTTCTCCTGGA
GCAGGACCTAGGTGCATCGATCCTACAAATCTCCATTGGGAGGTTTATCC
CGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig12750:876..1130-

>mRNA_S-dermatodea_contig12750.1682.1 ID=mRNA_S-dermatodea_contig12750.1682.1|Name=mRNA_S-dermatodea_contig12750.1682.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at S-dermatodea_contig12750:876..1130- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCTCTGTTCCACGCTAGAGAATGGTGGTCGACGAAGCTCGGGGACGC
CGAGGAGTTCGACAGGGGATCCATGGCCGTCGGAAACGCGGACAACGATC
CTGATGGAAACGTGAAAATCGTGACGGGGAGCTTCCAGGGCGTGCTGAGG
GTGCACTATCCCGTGAAGGCCGAATTTCGGATCGAGGATCTTCTCCTGGA
GCAGGACCTAGGTGCATCGATCCTACAAATCTCCATTGGGAGGTTTATCC
CGTGAATGTCTCTGTTCCACGCTAGAGAATGGTGGTCGACGAAGCTCGGG
GACGCCGAGGAGTTCGACAGGGGATCCATGGCCGTCGGAAACGCGGACAA
CGATCCTGATGGAAACGTGAAAATCGTGACGGGGAGCTTCCAGGGCGTGC
TGAGGGTGCACTATCCCGTGAAGGCCGAATTTCGGATCGAGGATCTTCTC
CTGGAGCAGGACCTAGGTGCATCGATCCTACAAATCTCCATTGGGAGGTT
TATCCCGTGA
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