mRNA_S-dermatodea_contig8674.16819.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8674.16819.1
Unique NamemRNA_S-dermatodea_contig8674.16819.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8674.16819.1 vs. uniprot
Match: A0A6H5JBL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBL8_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 1.820e-17
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    1 KVLNGQSWVLVDGAVLDVAGFAHRHPGGARLIENALGTDVTQELLG 138
            KVLNGQSWVLVDGA+LDV+ FA RHPGG RLI NALGTD+TQELLG
Sbjct: 1161 KVLNGQSWVLVDGAILDVSDFAKRHPGGQRLIINALGTDITQELLG 1206
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BLAST of mRNA_S-dermatodea_contig8674.16819.1 vs. uniprot
Match: D7FX04_ECTSI (Dopamine beta-monooxygenase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX04_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 1.820e-17
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    1 KVLNGQSWVLVDGAVLDVAGFAHRHPGGARLIENALGTDVTQELLG 138
            KVLNGQSWVLVDGA+LDV+ FA RHPGG RLI NALGTD+TQELLG
Sbjct:  471 KVLNGQSWVLVDGAILDVSEFAQRHPGGRRLIINALGTDITQELLG 516
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BLAST of mRNA_S-dermatodea_contig8674.16819.1 vs. uniprot
Match: A0A6H5JQ31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ31_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.620e-16
Identity = 38/46 (82.61%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    1 KVLNGQSWVLVDGAVLDVAGFAHRHPGGARLIENALGTDVTQELLG 138
            KVL+GQSW++VD AVLDV+ FAHRHPGG RLI NALGTDVTQELLG
Sbjct:  895 KVLSGQSWLMVDEAVLDVSDFAHRHPGGRRLILNALGTDVTQELLG 940
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BLAST of mRNA_S-dermatodea_contig8674.16819.1 vs. uniprot
Match: D8LFE2_ECTSI (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFE2_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 6.330e-16
Identity = 34/46 (73.91%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:    1 KVLNGQSWVLVDGAVLDVAGFAHRHPGGARLIENALGTDVTQELLG 138
            KVLN QSW+ VD A+LDV+ FA RHPGG RLI NALGTDVT E+LG
Sbjct:   10 KVLNSQSWLFVDSAILDVSEFAARHPGGRRLILNALGTDVTAEILG 55
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BLAST of mRNA_S-dermatodea_contig8674.16819.1 vs. uniprot
Match: D8LFE6_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFE6_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 1.440e-15
Identity = 37/46 (80.43%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 KVLNGQSWVLVDGAVLDVAGFAHRHPGGARLIENALGTDVTQELLG 138
            KVLNGQSW+LVDGA+LDV+ F  RHPGG RLI NALGTDVT ELLG
Sbjct:  989 KVLNGQSWLLVDGAILDVSEFTARHPGGRRLILNALGTDVTAELLG 1034
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BLAST of mRNA_S-dermatodea_contig8674.16819.1 vs. uniprot
Match: D7G7J2_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J2_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 3.660e-15
Identity = 36/46 (78.26%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:    1 KVLNGQSWVLVDGAVLDVAGFAHRHPGGARLIENALGTDVTQELLG 138
            KVL+GQSW++VD AVLDV+ FA RHPGG RLI NALGTDVTQEL+G
Sbjct:  890 KVLSGQSWLMVDEAVLDVSDFAQRHPGGRRLILNALGTDVTQELIG 935
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BLAST of mRNA_S-dermatodea_contig8674.16819.1 vs. uniprot
Match: D7G7J1_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J1_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 5.000e-15
Identity = 36/46 (78.26%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:    1 KVLNGQSWVLVDGAVLDVAGFAHRHPGGARLIENALGTDVTQELLG 138
            KVL+GQ+W++VD AVLDV+ FA RHPGG RLI NALGTDVTQELLG
Sbjct:  891 KVLSGQTWLMVDEAVLDVSDFAQRHPGGRRLILNALGTDVTQELLG 936
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BLAST of mRNA_S-dermatodea_contig8674.16819.1 vs. uniprot
Match: D8LB74_ECTSI (Delta-9 desaturase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB74_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 9.340e-15
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 KVLNGQSWVLVDGAVLDVAGFAHRHPGGARLIENALGTDVTQELLG 138
            KVLNG+SWV+VDGAVL+V+ FA RHPGG RLI NA+GTDVT E LG
Sbjct:  126 KVLNGRSWVIVDGAVLNVSDFAKRHPGGIRLIINAMGTDVTSEFLG 171
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BLAST of mRNA_S-dermatodea_contig8674.16819.1 vs. uniprot
Match: A0A6H5JX59_9PHAE (Cytochrome b5 heme-binding domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX59_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 2.380e-14
Identity = 34/46 (73.91%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 KVLNGQSWVLVDGAVLDVAGFAHRHPGGARLIENALGTDVTQELLG 138
            +VLNG+SWV+VDGAVL+V+ FA RHPGG RLI NA+GTDVT E LG
Sbjct:  197 QVLNGRSWVIVDGAVLNVSDFAERHPGGMRLIINAMGTDVTSEFLG 242
[Close]
BLAST of mRNA_S-dermatodea_contig8674.16819.1 vs. uniprot
Match: A0A6H5JUS3_9PHAE (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS3_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 4.780e-14
Identity = 36/46 (78.26%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:    1 KVLNGQSWVLVDGAVLDVAGFAHRHPGGARLIENALGTDVTQELLG 138
            KVLNGQSW+LVD A+LDV  FA RHPGG RLI NA GTDVT ELLG
Sbjct:   76 KVLNGQSWLLVDDAILDVPEFAARHPGGWRLIINAPGTDVTDELLG 121
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8674.16819.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5JBL8_9PHAE1.820e-1784.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX04_ECTSI1.820e-1784.78Dopamine beta-monooxygenase, putative n=1 Tax=Ecto... [more]
A0A6H5JQ31_9PHAE1.620e-1682.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFE2_ECTSI6.330e-1673.91Cytochrome b5 heme-binding domain-containing prote... [more]
D8LFE6_ECTSI1.440e-1580.43Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D7G7J2_ECTSI3.660e-1578.26Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D7G7J1_ECTSI5.000e-1578.26Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D8LB74_ECTSI9.340e-1576.09Delta-9 desaturase n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5JX59_9PHAE2.380e-1473.91Cytochrome b5 heme-binding domain-containing prote... [more]
A0A6H5JUS3_9PHAE4.780e-1478.26Cytochrome b5 heme-binding domain-containing prote... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8674contigS-dermatodea_contig8674:8613..8750 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.0
Seed ortholog evalue2.1e-14
Seed eggNOG ortholog2880.D7FX04
EggNOG free text desc.DOMON domain
EggNOG OGs2D0T2@1,2SFBV@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size138
Cds size138
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925358.6275845-CDS-S-dermatodea_contig8674:8612..87501622925358.6275845-CDS-S-dermatodea_contig8674:8612..8750Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8674 8613..8750 -
1694079879.5074072-CDS-S-dermatodea_contig8674:8612..87501694079879.5074072-CDS-S-dermatodea_contig8674:8612..8750Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8674 8613..8750 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8674.16819.1prot_S-dermatodea_contig8674.16819.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8674 8613..8750 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8674.16819.1

>prot_S-dermatodea_contig8674.16819.1 ID=prot_S-dermatodea_contig8674.16819.1|Name=mRNA_S-dermatodea_contig8674.16819.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=46bp
KVLNGQSWVLVDGAVLDVAGFAHRHPGGARLIENALGTDVTQELLG
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mRNA from alignment at S-dermatodea_contig8674:8613..8750-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8674.16819.1 ID=mRNA_S-dermatodea_contig8674.16819.1|Name=mRNA_S-dermatodea_contig8674.16819.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=138bp|location=Sequence derived from alignment at S-dermatodea_contig8674:8613..8750- (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGGTGTTGAACGGGCAGAGCTGGGTGCTCGTGGATGGCGCCGTTCTGGA
TGTGGCGGGTTTCGCGCACAGGCACCCAGGGGGCGCTCGTCTGATCGAAA
ACGCGTTGGGCACGGACGTCACACAGGAGCTGTTGGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8674:8613..8750-

>mRNA_S-dermatodea_contig8674.16819.1 ID=mRNA_S-dermatodea_contig8674.16819.1|Name=mRNA_S-dermatodea_contig8674.16819.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=276bp|location=Sequence derived from alignment at S-dermatodea_contig8674:8613..8750- (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGGTGTTGAACGGGCAGAGCTGGGTGCTCGTGGATGGCGCCGTTCTGGA
TGTGGCGGGTTTCGCGCACAGGCACCCAGGGGGCGCTCGTCTGATCGAAA
ACGCGTTGGGCACGGACGTCACACAGGAGCTGTTGGGGAAGGTGTTGAAC
GGGCAGAGCTGGGTGCTCGTGGATGGCGCCGTTCTGGATGTGGCGGGTTT
CGCGCACAGGCACCCAGGGGGCGCTCGTCTGATCGAAAACGCGTTGGGCA
CGGACGTCACACAGGAGCTGTTGGGG
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