mRNA_S-dermatodea_contig86727.16817.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig86727.16817.1
Unique NamemRNA_S-dermatodea_contig86727.16817.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig86727.16817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig86727contigS-dermatodea_contig86727:216..459 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size206
Cds size201
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig86727.16817.1prot_S-dermatodea_contig86727.16817.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig86727 221..459 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925358.4567952-UTR-S-dermatodea_contig86727:215..2201622925358.4567952-UTR-S-dermatodea_contig86727:215..220Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig86727 216..220 +
1694079879.3839417-UTR-S-dermatodea_contig86727:215..2201694079879.3839417-UTR-S-dermatodea_contig86727:215..220Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig86727 216..220 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925358.4679441-CDS-S-dermatodea_contig86727:220..3501622925358.4679441-CDS-S-dermatodea_contig86727:220..350Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig86727 221..350 +
1694079879.3947442-CDS-S-dermatodea_contig86727:220..3501694079879.3947442-CDS-S-dermatodea_contig86727:220..350Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig86727 221..350 +
1622925358.4787865-CDS-S-dermatodea_contig86727:388..4591622925358.4787865-CDS-S-dermatodea_contig86727:388..459Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig86727 389..459 +
1694079879.4114985-CDS-S-dermatodea_contig86727:388..4591694079879.4114985-CDS-S-dermatodea_contig86727:388..459Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig86727 389..459 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig86727.16817.1

>prot_S-dermatodea_contig86727.16817.1 ID=prot_S-dermatodea_contig86727.16817.1|Name=mRNA_S-dermatodea_contig86727.16817.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=67bp
MVPNKSITTSMAPNKSASVNPNKSARHFLFNEISNVSMFSHDQLCAPCNS
LPCACTLIPPLLHVSD*
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mRNA from alignment at S-dermatodea_contig86727:216..459+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig86727.16817.1 ID=mRNA_S-dermatodea_contig86727.16817.1|Name=mRNA_S-dermatodea_contig86727.16817.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=244bp|location=Sequence derived from alignment at S-dermatodea_contig86727:216..459+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATAGAATGGTTCCCAACAAGTCTATTACTACTAGTATGGCCCCCAACAAG
TCTGCTAGTGTGAATCCCAACAAGTCTGCGCGCCATTTTTTGTTCAACGA
AATTTCGAACGTTAGTATGTTCTCGCATGACCAGCGTGCGCCCCCTGCAA
CTAATGTGTTCTCGCATGACCAGTGTGCGCCCCCTGCAACTCCCTCCCCT
GTGCTTGTACCCTCATCCCTCCCCTTCTGCACGTCAGCGATTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig86727:216..459+

>mRNA_S-dermatodea_contig86727.16817.1 ID=mRNA_S-dermatodea_contig86727.16817.1|Name=mRNA_S-dermatodea_contig86727.16817.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at S-dermatodea_contig86727:216..459+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTTCCCAACAAGTCTATTACTACTAGTATGGCCCCCAACAAGTCTGC
TAGTGTGAATCCCAACAAGTCTGCGCGCCATTTTTTGTTCAACGAAATTT
CGAACGTTAGTATGTTCTCGCATGACCAGCATGGTTCCCAACAAGTCTAT
TACTACTAGTATGGCCCCCAACAAGTCTGCTAGTGTGAATCCCAACAAGT
CTGCGCGCCATTTTTTGTTCAACGAAATTTCGAACGTTAGTATGTTCTCG
CATGACCAGCTGTGCGCCCCCTGCAACTCCCTCCCCTGTGCTTGTACCCT
CATCCCTCCCCTTCTGCACGTCAGCGATTGATGTGCGCCCCCTGCAACTC
CCTCCCCTGTGCTTGTACCCTCATCCCTCCCCTTCTGCACGTCAGCGATT
GA
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