mRNA_S-dermatodea_contig8672.16815.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8672.16815.1
Unique NamemRNA_S-dermatodea_contig8672.16815.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8672.16815.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8672contigS-dermatodea_contig8672:1600..4201 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size501
Cds size375
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8672.16815.1prot_S-dermatodea_contig8672.16815.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8672 1600..4075 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925358.352585-CDS-S-dermatodea_contig8672:1599..19071622925358.352585-CDS-S-dermatodea_contig8672:1599..1907Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8672 1600..1907 -
1694079879.3209379-CDS-S-dermatodea_contig8672:1599..19071694079879.3209379-CDS-S-dermatodea_contig8672:1599..1907Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8672 1600..1907 -
1622925358.3661044-CDS-S-dermatodea_contig8672:4008..40751622925358.3661044-CDS-S-dermatodea_contig8672:4008..4075Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8672 4009..4075 -
1694079879.3313026-CDS-S-dermatodea_contig8672:4008..40751694079879.3313026-CDS-S-dermatodea_contig8672:4008..4075Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8672 4009..4075 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925358.3800871-UTR-S-dermatodea_contig8672:4075..42011622925358.3800871-UTR-S-dermatodea_contig8672:4075..4201Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8672 4076..4201 -
1694079879.3445091-UTR-S-dermatodea_contig8672:4075..42011694079879.3445091-UTR-S-dermatodea_contig8672:4075..4201Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8672 4076..4201 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8672.16815.1

>prot_S-dermatodea_contig8672.16815.1 ID=prot_S-dermatodea_contig8672.16815.1|Name=mRNA_S-dermatodea_contig8672.16815.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=125bp
MASSLFRSGWHQSAHRIAQVRAGSTKGGWTASGRWRMVPVRENQHACSKT
KGKIGGANATETNGGHPPSQYFLQQLYSSSFGANTVTGSIPRQHHCHQPG
ANVRFGAHSHDSEAGRHRTSCGVFG
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mRNA from alignment at S-dermatodea_contig8672:1600..4201-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8672.16815.1 ID=mRNA_S-dermatodea_contig8672.16815.1|Name=mRNA_S-dermatodea_contig8672.16815.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2602bp|location=Sequence derived from alignment at S-dermatodea_contig8672:1600..4201- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGCCTCCTCTACTAAGCACCGCGTTAATGCGGGAGGGAGGCGCCCACGAC
TACTGCGCTATCAACTTCCTAGTAGAGGAGGCTGCCTTCAAGGGGATCGT
CAGCAAGAGCATCGAGAAGTACAAGGATGGCTTCTTCTCTCTTTCGCTCC
GGGTGGCATCAGTCTGCCCACAGGATAGCACAAGTGAGAGCAGGTAAACA
CAATAAGGTTCGAGAATAGCAGCAATATTTATCTCGACGAGTGCGTGCAT
CTGTCTTCTTTGCCCCTACAAGTACTGTACAAGTTTGTTTTTTTCCGTCA
AGTGCCGCACACTACAGACCACCGCAGACCAGCAGCAGTAGGCGGTCAAA
GAGAGAGCGTTGCACAGGGTCACTCGAAGCGTGAGCTTACCCAGTATGTA
CAAGTACGGCTGACGCGGCGATCGGTGCGGATATATGTAAAGTACTAATA
GACCCGAACGGCGGTATGATAGTACTGCCTGTAGCAATGTGCGGCGTTGC
ATTGCATTCAAATGTTCACCGAGAGTCAAGAACTGCTTGGACACAAAATT
GACGATTCATAATATTACAATACACATCAATATTGATTCATTCAAAGACA
GATTGTCGCAGCCTGGGAGTGACTACAAACAGCTGTAGTACGAAAAGTTG
GAGTGTGAGATTCGTGGGGACATCAGCTCTGAGATGGCTGAAAAGGCATG
AAGAAGTGTTAACTAACCCGACACAGGGAAATCCTCGTGGGTAGACACGA
TCGGCATCGGGGTCTTTGTAGCTAGGAATCCATGTCCATTCTCCCTTGGA
CGGTACGGTGCGGTACAGCCTAGCGTGGCTCCACAATTATTCATACTATG
CATATTTGACGGCGGCAGCGTTTTGTGCCTGGCAACGACTTCCCTTGGCG
CCAGCGCCCGGTCCCTGCGCCCGGTGTGTGAGTGTTTCATTTTGATTATT
CTTCCTTTTCGACGACAAGGCAATAGAGCTCTATTATATATACAAGTAGG
GGTTTCTCCTCGTTCCGGTGTCCTGGGTAACACCTGAAACGTTTTTTCCC
ACGGCAAGTGGGTCGTTCCAAACAGGCCAAAACAATTCATTTCGGTTGAA
TGTCGTTGAATACGGATCAATACGTTTCAACATTGTTTTTTAACATTCTC
GAGTCGAAATCCGTGTCTTTGTTAAACGTCGCCAACGCGAATGGACGTTT
AAAATGTTGAAAGGCATGTTTAATGTGGGTGCAGGTTGCGTTTTTTTGCC
CAGGCACCTCTCTCAGTTAGATGTATGTCCAAGGGGGCGGGGGCGTACTC
ATATTTTGCATGCCTTAGCTGTTAGGACATTGACCACGCGTCATCGAGAG
AACGGAGCATGGTTCCCACAGGATCGATCGCCAATTGGCCAATCGTTCCT
TCCTACTTTGCCAAAGGTGACGCAAAAGTTCGACAGCAGCCATATTCGGA
CCCGGCAATATACGAGACTCTCTGTGAGTCTGTGTGAGTTCTTTGAGTCT
GTGTGAGTTCAATGTGGGTCTCTGTAAGTATCGGTGACTCTCTGTGAGTC
TTTGTGAGTCTGTGTGAGTTCACTGCGGGTCTCTGTGAATATCTGTGACT
GTTCGAAGTCTTTCTGAGTCCTCTGTGAGTCTCTGTGGTATAACAGAGAC
TCACAGAGACTCACAAAGACTCACAGAGGACTCACAAATGAAGCCCACTT
TGGATCCACTGTGGGTCTATGTGAGTTATCTGTGGGTGGTGTCTCTGACT
CTCTGTGAGTCTGTGTGAGTCTGTGTGAGACTGTGTGAGTTCTCTGTGAG
TCTGTGTGAGTCTGTGTGAGTTCTCTGTGCGTCTTTGTCAGTCTCTGTCA
GACTCTGTGAGTCTCTGTGAGTCTATGTGAGTCTCTGTGACTTGTCTGTG
AGTCTCTGTGAGTCTCCGTGAGTTCTGTGTGAGTCTCTGGGACCTTAGGG
TTAGGGTTAGGGTCAGGGTCACAGAGACTCACAGAGAGTCACAGAGAGTC
ACAGATACTCACAGAGACCCACAGTGAACTCACACAGACTCACAGAAAAC
TCACACAGACTCACAGAGAGTCTCGTATATTGCCGGGTCCGAATGTGCAT
CATAAGAGGTCCCAAAAGTTTCCCCATCCTGTCTACATCACCTCTCGCCT
TCTATGTCCAACGGGTGACTATGTAAAAACAAATGTACATGCAGTGAACT
ACCTGGTAGGGCTTATACAGCGCGTTTGTCGTATGATGACATGATGACAC
CTGCAGCCTACTACTACTGCTGTTGTACTCTGTGCTCGATGAAGGAAGTA
CGAAAGGCGGCTGGACTGCCAGTGGTCGGTGGAGAATGGTTCCTGTTCGC
GAGAATCAACACGCCTGCTCGAAAACAAAAGGAAAAATAGGAGGGGCGAA
TGCCACGGAGACCAACGGCGGACACCCACCGAGCCAATACTTCCTACAAC
AACTGTACAGCAGTAGTTTTGGCGCGAACACGGTGACTGGATCGATACCA
AGACAGCACCACTGCCACCAACCCGGAGCGAACGTGCGTTTTGGCGCACA
CAGCCATGATTCTGAAGCGGGTCGCCATCGCACCTCTTGTGGCGTGTTCG
GG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8672:1600..4201-

>mRNA_S-dermatodea_contig8672.16815.1 ID=mRNA_S-dermatodea_contig8672.16815.1|Name=mRNA_S-dermatodea_contig8672.16815.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at S-dermatodea_contig8672:1600..4201- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCTTCTTCTCTCTTTCGCTCCGGGTGGCATCAGTCTGCCCACAGGAT
AGCACAAGTGAGAGCAGATGGCTTCTTCTCTCTTTCGCTCCGGGTGGCAT
CAGTCTGCCCACAGGATAGCACAAGTGAGAGCAGGAAGTACGAAAGGCGG
CTGGACTGCCAGTGGTCGGTGGAGAATGGTTCCTGTTCGCGAGAATCAAC
ACGCCTGCTCGAAAACAAAAGGAAAAATAGGAGGGGCGAATGCCACGGAG
ACCAACGGCGGACACCCACCGAGCCAATACTTCCTACAACAACTGTACAG
CAGTAGTTTTGGCGCGAACACGGTGACTGGATCGATACCAAGACAGCACC
ACTGCCACCAACCCGGAGCGAACGTGCGTTTTGGCGCACACAGCCATGAT
TCTGAAGCGGGTCGCCATCGCACCTCTTGTGGCGTGTTCGGGGAAGTACG
AAAGGCGGCTGGACTGCCAGTGGTCGGTGGAGAATGGTTCCTGTTCGCGA
GAATCAACACGCCTGCTCGAAAACAAAAGGAAAAATAGGAGGGGCGAATG
CCACGGAGACCAACGGCGGACACCCACCGAGCCAATACTTCCTACAACAA
CTGTACAGCAGTAGTTTTGGCGCGAACACGGTGACTGGATCGATACCAAG
ACAGCACCACTGCCACCAACCCGGAGCGAACGTGCGTTTTGGCGCACACA
GCCATGATTCTGAAGCGGGTCGCCATCGCACCTCTTGTGGCGTGTTCGGG
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