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Homology
BLAST of mRNA_S-dermatodea_contig8671.16814.1 vs. uniprot
Match: D7G6W6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6W6_ECTSI) HSP 1 Score: 219 bits (559), Expect = 1.210e-62 Identity = 139/296 (46.96%), Postives = 183/296 (61.82%), Query Frame = 1
Query: 301 RRGASRAPMSPSSLHAV-DRQEGHLLPE----EPQADAGLDEPKSAIRSRWSKGQGSWSRAPKDATSGDMERNGMGGGED-AGAGPAIAAVSQEVEGATGVDQ----DTTFAELPA---GGQEE--EGEGVPKPNL-TKKRLKKFFLKDFAGSSWTVGIQWKKRPGKIVTTKVALKEDGTVIWLDKGKGNWKLRTKSRDLVFYRDYFLNWNGKRIYAAKLLDNTCDMYIEGDIKGWGPFMSLNTLGSFQAVRRGIPVDENTPRPPWESRPPLP-VEVEDGKPPPKTEEIFLDVDLE 1137
RR SRAP+ + L A +R EGH L E + + A +D P +A AP ++R+ GGE+ AG +AAV++E + V Q + AEL A GGQ+E E + KP+ KRLKK+F KDF ++WTV IQW ++ TTKVALK DG V+WLDKGKG+W LRTKSRD+ YR++FLNW G RI++AKLL+NTCDMY+ G IKGW PF+ L+ +G++QAVRRGI +DENTPRPPWESR + V + DG+ K I +DVDL+
Sbjct: 48 RRSPSRAPVGSTQLEATAERPEGHALQEGQEEKASSSASVDTPPAA--------------APASPV---VDRSSAEGGEEKAGLAQNVAAVAKETDATASVGQSAEEEEVMAELLAHQPGGQDEAQEVDAALKPSKRVTKRLKKYFPKDFQDTTWTVAIQWNHSKYEVKTTKVALKADGEVVWLDKGKGSWILRTKSRDISIYRNFFLNWAGMRIFSAKLLNNTCDMYLSGVIKGWQPFLPLSKMGTWQAVRRGITLDENTPRPPWESREVVKEVTMPDGRK-RKNTPIEIDVDLD 325
BLAST of mRNA_S-dermatodea_contig8671.16814.1 vs. uniprot
Match: A0A835YQD3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQD3_9STRA) HSP 1 Score: 158 bits (399), Expect = 7.250e-40 Identity = 71/137 (51.82%), Postives = 98/137 (71.53%), Query Frame = 1
Query: 649 PKPNLTKKRLKKFFLKDFAGSSWTVGIQWKKRPGKIVTTKVALKEDGTVIWLDKGKGNWKLRTKSRDLVFYRDYFLNWNGKRIYAAKLLDNTCDMYIEGDIKGWGPFMSLNTLGSFQAVRRGIPVDENTPRPPWESR 1059
P+P +R+KKFF +DFA S+W V I W R K TKV L++DG V+WLDKGKG+W+L TKSR L FYRD+FL W GKRI++ +LLDN + Y+EG++KGWGP+ L +G +QA+R G+ ++++ P P W R
Sbjct: 165 PEPERKVRRVKKFFARDFANSTWAVAILWGARR-KPQMTKVFLRDDGKVVWLDKGKGSWRLDTKSRSLGFYRDFFLGWKGKRIFSTRLLDNCNEHYLEGEVKGWGPWFPLKWMGQWQAIRLGVDLEKHGPAP-WLQR 299
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 218.0 |
| Seed ortholog evalue | 5.4e-54 |
| Seed eggNOG ortholog | 2880.D7G6W6 |
| EggNOG OGs | 2CZXD@1,2SC0X@2759 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | conserved unknown protein |
| Ec32 ortholog | Ec-01_011980.1 |
| Exons | 4 |
| Model size | 1892 |
| Cds size | 816 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig8671.16814.1 >prot_S-dermatodea_contig8671.16814.1 ID=prot_S-dermatodea_contig8671.16814.1|Name=mRNA_S-dermatodea_contig8671.16814.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=272bp
MSPSSLHAVDRQEGHLLPEEPQADAGLDEPKSAIRSRWSKGQGSWSRAPK
DATSGDMERNGMGGGEDAGAGPAIAAVSQEVEGATGVDQDTTFAELPAGG
QEEEGEGVPKPNLTKKRLKKFFLKDFAGSSWTVGIQWKKRPGKIVTTKVA
LKEDGTVIWLDKGKGNWKLRTKSRDLVFYRDYFLNWNGKRIYAAKLLDNT
CDMYIEGDIKGWGPFMSLNTLGSFQAVRRGIPVDENTPRPPWESRPPLPV
EVEDGKPPPKTEEIFLDVDLE* back to topmRNA from alignment at S-dermatodea_contig8671:3370..6588- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig8671.16814.1 ID=mRNA_S-dermatodea_contig8671.16814.1|Name=mRNA_S-dermatodea_contig8671.16814.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3219bp|location=Sequence derived from alignment at S-dermatodea_contig8671:3370..6588- (Saccorhiza dermatodea SderLu1190fm monoicous)
CGCCTTTCGAACTTCTGCTGCTGTTCCTGCCTGTCGCGGTCTCTGGTATC
TTCGCAACTGCTGTTCAACAATTAATAATACCTGGTAGAGCCCGGATCGT
CTGAACTAATGCTGAGTTGGAGAGTGGACGCCTGTGGGATCAAGTTGGAG
ATCAACACGGCAGTCCGCAGGATTTTCATCCTCACTTTGGTACTCCCTGA
ACAAGTCCCCCATCCTGCAGCCCCAAGTTGACGCCACGATGCCTATTGCT
GCTGCGATTCCTGCCTGTGCCTCCTGCCCTTCATCCCAGGATCATGCCTC
CGTCGGGGCGCCTCCCGAGCACCTATGAGCCCTTCAAGCCTCCACGCCGT
TGATCGGCAAGAAGGGCACCTCTTGCCCGAGGAGCCACAGGCAGATGCCG
GTCTGGACGAGCCGAAAAGCGCGATCCGCTCCCGATGGTCTAAGGGGCAA
GGATCATGGTCAAGGGCGCCCAAAGACGCCACTTCTGGCGACATGGAGAG
GAATGGCATGGGGGGCGGCGAGGACGCAGGAGCGGGGCCAGCGATCGCTG
CCGTATCGCAGGAGGTAGAAGGGGCGACTGGTGTTGACCAGGACACGACT
TTTGCAGAGCTGCCTGCGGGGGGTCAAGAGGAGGAGGGGGAGGGTGTTCC
AAAGCCTAACGTGAGTGCAATCCTCGCTGCTTCGCCATGAACATTTTGGA
GGCGTGGCTGTCGCGTGCGAATCGGCACCGTGGAGGAATGGCGAGCGGGC
TTGCGCACCGGTGAAGGGGTCTGCATGAGAAACGTTAAGTCAAACCAAGC
TGTCTAGTTGTCCTTGCACGTAAGTTAGATCCGGTACAAAGTGCTCTGTC
CGTCCGACGCTCTTCGACCGCCGCCGCTCTCACGCTGATGCTGAATGTCC
TCGTTAGCTGACGAAGAAGCGACTCAAGAAGTTTTTCCTCAAGGACTTCG
CTGGTTCTTCTTGGACAGTGGGGATCCAATGGAAAAAACGACCGGGCAAG
ATCGTAACAACCAAGGTCAGTCGCTGCGAAAAGTGGTTGGTCGAGGTCTA
CTACCTGCTGCACGAGGGGCTACACACGAGGGGCTATACCTCTGTAGAGC
CACATGGCTTGGGCTCCGCTTCCGTTTCCCACGTACACAGTGGGGTGTAT
ATTGTGACACAAAAATCTACATGGGGCCGCTGTGGCTAAGTTGGAGACAC
AAGTAGGGCATTTACGGCAGTGTTGAAGTCCCTTTGCTGAGTGGGTGGGC
CGCGCCGCGCCGTCCAGACTCTCATGGTTATGGTATTCGAGTTATCATGT
AAAACTACGCGAAGGAGAAATCCCCGGTGAGACGTGGCCAAGCTGGTCGC
TAAACACACGCGCAATCAAACGGTCCGTTGGCGGCATGCCCTTCCCTAAA
TTTTGCTTCGGTTGCTCGGCCAGTGGACGCCGTACCGCAGCTCCTCAGCA
CGTCCTCACCGTGCACAATATGTACTGTCCACTGCGGCCTCGACTGATAC
GTGATTCCCGCATTCTCCCTGCAGGTGGCGCTGAAGGAGGATGGTACGGT
AATATGGCTCGACAAGGGGAAGGGGAACTGGAAACTACGCACAAAAAGTC
GCGACCTGGTATTTTACCGCGACTATTTCTTGAACTGGAACGGCAAGCGA
ATTTACGCTGCAAAACTGCTGGACAACACTTGCGACATGTATATCGAGGG
GGATATCAAAGGCTGGGGCCCCTTTATGTCTCTCAATACGTTGGGAAGCT
TCCAAGCTGTGCGCAGGTAGGAGTGCGAGGCGCCCTCGTGGACTTGGCTG
CAGGTCGTGTCCTGTCTTGGGCGCTTTGTTGCGAATCCCCACACCTTCTA
TGTGTGTAGGTAGCAGCATACCCTAGTGCATGGGCACAAGATGCGCCCTC
TATCTCTCGATCCAGTGATTGGCTTTGATTTATCTTGGCGTTTATAACCG
ATCGGCCCACCAATAGACGCCGGTCCCGCTCATGGTCGGGCAACAGTGCG
ATACAATCGAAACAACGAACGGAACTCTCTATAAAACAGGACCTACACGA
GAGAGAATGGACACCACGTTCGGAAACAGAGAGGACCTGCCACAGCACTT
GGATATGTAGACTTTGGTCACCAAGAAAACATGGATGCATCCATTGGTCT
CTGCGAATCCCGTATGGTAGCTTGGTCGCCACCGAAGATGCTTGTGTAGA
TCGTGCGACACCTTGGCTTGACTCGTCGTTCTTCCCTTGCAGTGTGGACC
CCCCCGGGTTTCCGATCTGTTCACGTTGCAACTGACCCCGTGTCAAAATG
TCCCCGCAACACCCCTGCACGCGAAACGTTCCCGCAGAGGAATCCCCGTC
GACGAGAACACACCACGGCCGCCCTGGGAGAGCCGGCCACCCCTACCGGT
GGAGGTTGAAGATGGCAAGCCCCCGCCTAAGACCGAGGAGATTTTCTTAG
ATGTAGACTTGGAGTGAGTGCACGTGGCGAGCCTCTCAGCTCGATTCAGC
CGGCGGTAAAAATACGAGGCCTTTACTGCTGCTGTCGAATCTCATCTTAT
ATCTGTAATCTGCCCATACCCTTGGCCTGGGTCAATCTATGTACAATAGA
GGTTGCAGTTGCGCACTACAAGTGTGCAGGCGTGAAATGTTGTCGAGAGT
CGCGCAACACTGGCGGGTGGTTCGCCGGCAGCTAAAATATTACATAGTTG
GTTGTGTTGATAAAGGCGGCTGTTTCCAACGACGCTTCAATGGAGTCTTG
CGCGCAGCAACGCTCCACCCCGCTTCTAACGCTCTGTTGGCGGCCGTCGC
TCTCCTGCTTGTTGTGTGCCAACCTTTCTTTCGATTTAATCCGTGAGTGT
TCACGTCGTATGTAGAGAGGTTCTCGATATCGTGCGACTGGAGGACGCCG
GGAGAGAGGCGTTTTGGGGCTTTTCATGTGCGACCCTCGATCATCAAATT
TTTACCGAAGCATGAACTAGGAAATAGTGATTTTTTTAGTGTGGTGAGAC
CCTCGAACATGCTTAGTTTACCCACCAAGCATGAATTATATAATGGAAGT
ACTGTACCCTGGGATCTTGGCACGAAATGATGTTTTGCCTCAGTCAGCTA
TTCGCTAAGCCTTTCACTCTTCTATCGGGCTGCTCAGTAGGTTTGCCCCG
CGGTGCCCAACAATAATGGCGTCCACCCGCAGGCAGGCGTGTACCTGAAA
ACATGAAAAAACGTTTTGC back to topCoding sequence (CDS) from alignment at S-dermatodea_contig8671:3370..6588- >mRNA_S-dermatodea_contig8671.16814.1 ID=mRNA_S-dermatodea_contig8671.16814.1|Name=mRNA_S-dermatodea_contig8671.16814.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1632bp|location=Sequence derived from alignment at S-dermatodea_contig8671:3370..6588- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAGCCCTTCAAGCCTCCACGCCGTTGATCGGCAAGAAGGGCACCTCTT
GCCCGAGGAGCCACAGGCAGATGCCGGTCTGGACGAGCCGAAAAGCGCGA
TCCGCTCCCGATGGTCTAAGGGGCAAGGATCATGGTCAAGGGCGCCCAAA
GACGCCACTTCTGGCGACATGGAGAGGAATGGCATGGGGGGCGGCGAGGA
CGCAGGAGCGGGGCCAGCGATCGCTGCCGTATCGCAGGAGGTAGAAGGGG
CGACTGGTGTTGACCAGGACACGACTTTTGCAGAGCTGCCTGCGGGGGGT
CAAGAGGAGGAGGGGGAGGGTGTTCCAAAGCCTAACATGAGCCCTTCAAG
CCTCCACGCCGTTGATCGGCAAGAAGGGCACCTCTTGCCCGAGGAGCCAC
AGGCAGATGCCGGTCTGGACGAGCCGAAAAGCGCGATCCGCTCCCGATGG
TCTAAGGGGCAAGGATCATGGTCAAGGGCGCCCAAAGACGCCACTTCTGG
CGACATGGAGAGGAATGGCATGGGGGGCGGCGAGGACGCAGGAGCGGGGC
CAGCGATCGCTGCCGTATCGCAGGAGGTAGAAGGGGCGACTGGTGTTGAC
CAGGACACGACTTTTGCAGAGCTGCCTGCGGGGGGTCAAGAGGAGGAGGG
GGAGGGTGTTCCAAAGCCTAACCTGACGAAGAAGCGACTCAAGAAGTTTT
TCCTCAAGGACTTCGCTGGTTCTTCTTGGACAGTGGGGATCCAATGGAAA
AAACGACCGGGCAAGATCGTAACAACCAAGCTGACGAAGAAGCGACTCAA
GAAGTTTTTCCTCAAGGACTTCGCTGGTTCTTCTTGGACAGTGGGGATCC
AATGGAAAAAACGACCGGGCAAGATCGTAACAACCAAGGTGGCGCTGAAG
GAGGATGGTACGGTAATATGGCTCGACAAGGGGAAGGGGAACTGGAAACT
ACGCACAAAAAGTCGCGACCTGGTATTTTACCGCGACTATTTCTTGAACT
GGAACGGCAAGCGAATTTACGCTGCAAAACTGCTGGACAACACTTGCGAC
ATGTATATCGAGGGGGATATCAAAGGCTGGGGCCCCTTTATGTCTCTCAA
TACGTTGGGAAGCTTCCAAGCTGTGCGCAGGTGGCGCTGAAGGAGGATGG
TACGGTAATATGGCTCGACAAGGGGAAGGGGAACTGGAAACTACGCACAA
AAAGTCGCGACCTGGTATTTTACCGCGACTATTTCTTGAACTGGAACGGC
AAGCGAATTTACGCTGCAAAACTGCTGGACAACACTTGCGACATGTATAT
CGAGGGGGATATCAAAGGCTGGGGCCCCTTTATGTCTCTCAATACGTTGG
GAAGCTTCCAAGCTGTGCGCAGAGGAATCCCCGTCGACGAGAACACACCA
CGGCCGCCCTGGGAGAGCCGGCCACCCCTACCGGTGGAGGTTGAAGATGG
CAAGCCCCCGCCTAAGACCGAGGAGATTTTCTTAGATGTAGACTTGGAGT
GAAGGAATCCCCGTCGACGAGAACACACCACGGCCGCCCTGGGAGAGCCG
GCCACCCCTACCGGTGGAGGTTGAAGATGGCAAGCCCCCGCCTAAGACCG
AGGAGATTTTCTTAGATGTAGACTTGGAGTGA back to top
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