mRNA_S-dermatodea_contig86698.16811.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig86698.16811.1
Unique NamemRNA_S-dermatodea_contig86698.16811.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig86698.16811.1 vs. uniprot
Match: D7G8Q1_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Q1_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 2.140e-13
Identity = 42/60 (70.00%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:    1 RAVQDEIRGVERKXXXXXXXXXXXAK-IDDVEAAIAGGSGYLGMTDPEALLKQLRREKEQ 177
            RAVQD+IRGVERKX           K IDD+EAAIAGGS YLGMTDPEALLKQL R++EQ
Sbjct:   35 RAVQDDIRGVERKXEDAEKETAEVVKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEEQ 94
[Close]
BLAST of mRNA_S-dermatodea_contig86698.16811.1 vs. uniprot
Match: D8LPP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPP1_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 3.040e-13
Identity = 43/63 (68.25%), Postives = 45/63 (71.43%), Query Frame = 1 
Query:    1 RAVQDEIRGVERKXXXXXXXXXXXAK-IDDVEAAIAGGSGYLGMTDPEALLKQLRREKEQLRR 186
            RAVQDEIRGVERK            K IDD+EAAIAGG+ YLGMTDPEALLKQL    EQLRR
Sbjct:   42 RAVQDEIRGVERKIEDAEEETAEVVKKIDDIEAAIAGGARYLGMTDPEALLKQL----EQLRR 100
[Close]
BLAST of mRNA_S-dermatodea_contig86698.16811.1 vs. uniprot
Match: D7G515_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G515_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 3.840e-9
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:   76 KIDDVEAAIAGGSGYLGMTDPEALLKQLRREKEQLRR 186
            KID +EAAIAGGS YLGMTDPEALLKQL R++EQLRR
Sbjct:   68 KIDYIEAAIAGGSKYLGMTDPEALLKQLGRKEEQLRR 104
[Close]
BLAST of mRNA_S-dermatodea_contig86698.16811.1 vs. uniprot
Match: D7FM56_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM56_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 3.010e-7
Identity = 28/34 (82.35%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:   82 DDVEAAIAGGSGYLGMTDPEALLKQLRREKEQLR 183
            D +EAAIAGGS YLGMTDPEALLKQL R++EQLR
Sbjct:  138 DGIEAAIAGGSRYLGMTDPEALLKQLGRKEEQLR 171
[Close]
BLAST of mRNA_S-dermatodea_contig86698.16811.1 vs. uniprot
Match: D7G3Q8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q8_ECTSI)

HSP 1 Score: 50.4 bits (119), Expect = 5.010e-6
Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = 1 
Query:   76 KIDDVEAA-IAGGSGYLGMTDPEALLKQLRR 165
            KIDDVEAA IAGGSGYLGMTDPEALLK+  R
Sbjct:   68 KIDDVEAATIAGGSGYLGMTDPEALLKEKER 98
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig86698.16811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G8Q1_ECTSI2.140e-1370.00Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
D8LPP1_ECTSI3.040e-1368.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G515_ECTSI3.840e-983.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FM56_ECTSI3.010e-782.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3Q8_ECTSI5.010e-687.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig86698contigS-dermatodea_contig86698:49..244 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size197
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925358.072654-CDS-S-dermatodea_contig86698:48..2431622925358.072654-CDS-S-dermatodea_contig86698:48..243Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig86698 49..243 +
1694079879.124341-CDS-S-dermatodea_contig86698:48..2431694079879.124341-CDS-S-dermatodea_contig86698:48..243Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig86698 49..243 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig86698.16811.1prot_S-dermatodea_contig86698.16811.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig86698 49..243 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig86698.16811.1

>prot_S-dermatodea_contig86698.16811.1 ID=prot_S-dermatodea_contig86698.16811.1|Name=mRNA_S-dermatodea_contig86698.16811.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=65bp
RAVQDEIRGVERKIEDVEKETEEVAKIDDVEAAIAGGSGYLGMTDPEALL
KQLRREKEQLRREKE
back to top

mRNA from alignment at S-dermatodea_contig86698:49..244+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig86698.16811.1 ID=mRNA_S-dermatodea_contig86698.16811.1|Name=mRNA_S-dermatodea_contig86698.16811.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=196bp|location=Sequence derived from alignment at S-dermatodea_contig86698:49..244+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGTGCGGTCCAGGATGAGATCCGTGGTGTCGAGCGCAAGATCGAGGATGT
AGAGAAGGAGACGGAAGAGGTAGCCAAGATTGATGATGTTGAGGCTGCTA
TTGCCGGGGGCTCCGGGTACCTCGGAATGACCGACCCCGAAGCCCTGTTG
AAGCAACTACGCAGGGAGAAGGAGCAACTACGCAGGGAGAAGGAGC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig86698:49..244+

>mRNA_S-dermatodea_contig86698.16811.1 ID=mRNA_S-dermatodea_contig86698.16811.1|Name=mRNA_S-dermatodea_contig86698.16811.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at S-dermatodea_contig86698:49..244+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGTGCGGTCCAGGATGAGATCCGTGGTGTCGAGCGCAAGATCGAGGATGT
AGAGAAGGAGACGGAAGAGGTAGCCAAGATTGATGATGTTGAGGCTGCTA
TTGCCGGGGGCTCCGGGTACCTCGGAATGACCGACCCCGAAGCCCTGTTG
AAGCAACTACGCAGGGAGAAGGAGCAACTACGCAGGGAGAAGGAGCGTGC
GGTCCAGGATGAGATCCGTGGTGTCGAGCGCAAGATCGAGGATGTAGAGA
AGGAGACGGAAGAGGTAGCCAAGATTGATGATGTTGAGGCTGCTATTGCC
GGGGGCTCCGGGTACCTCGGAATGACCGACCCCGAAGCCCTGTTGAAGCA
ACTACGCAGGGAGAAGGAGCAACTACGCAGGGAGAAGGAG
back to top